메뉴 건너뛰기




Volumn 16, Issue 4, 2016, Pages 1126-1137

Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq

Author keywords

[No Author keywords available]

Indexed keywords

ADDICTION; ANIMAL CELL; ARTICLE; ASTROCYTE; CELL DIFFERENTIATION; CELL FUNCTION; CELL POPULATION; COGNITIVE DEFECT; CONTROLLED STUDY; CORPUS STRIATUM; EPENDYMA CELL; FLUORESCENCE ACTIVATED CELL SORTING; GENE CLUSTER; GENE IDENTIFICATION; GENE ONTOLOGY; GENE OVEREXPRESSION; GENETIC TRANSCRIPTION; IMMUNOCOMPETENT CELL; MALE; MEDIUM SPINY NEURON; MICROFLUIDICS; MOLECULAR IMAGING; MOUSE; NERVE CELL; NONHUMAN; OLIGODENDROGLIA; PRIORITY JOURNAL; RNA SEQUENCE; SINGLE CELL ANALYSIS; VASCULAR ENDOTHELIAL CELL; ANIMAL; EPENDYMA; GENETICS; METABOLISM; PATHOPHYSIOLOGY; PHYSIOLOGY;

EID: 84978879999     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2016.06.059     Document Type: Article
Times cited : (302)

References (69)
  • 1
    • 84862908461 scopus 로고    scopus 로고
    • An improved BAC transgenic fluorescent reporter line for sensitive and specific identification of striatonigral medium spiny neurons
    • Ade, K.K., Wan, Y., Chen, M., Gloss, B., Calakos, N., An improved BAC transgenic fluorescent reporter line for sensitive and specific identification of striatonigral medium spiny neurons. Front. Syst. Neurosci., 5, 2011, 32.
    • (2011) Front. Syst. Neurosci. , vol.5 , pp. 32
    • Ade, K.K.1    Wan, Y.2    Chen, M.3    Gloss, B.4    Calakos, N.5
  • 2
    • 77956926560 scopus 로고    scopus 로고
    • Notch and EGFR pathway interaction regulates neural stem cell number and self-renewal
    • Aguirre, A., Rubio, M.E., Gallo, V., Notch and EGFR pathway interaction regulates neural stem cell number and self-renewal. Nature 467 (2010), 323–327.
    • (2010) Nature , vol.467 , pp. 323-327
    • Aguirre, A.1    Rubio, M.E.2    Gallo, V.3
  • 3
    • 0029878458 scopus 로고    scopus 로고
    • Pathogenicity of IgA and/or IgM antibodies to heparin-PF4 complexes in patients with heparin-induced thrombocytopenia
    • Amiral, J., Wolf, M., Fischer, A., Boyer-Neumann, C., Vissac, A., Meyer, D., Pathogenicity of IgA and/or IgM antibodies to heparin-PF4 complexes in patients with heparin-induced thrombocytopenia. Br. J. Haematol. 92 (1996), 954–959.
    • (1996) Br. J. Haematol. , vol.92 , pp. 954-959
    • Amiral, J.1    Wolf, M.2    Fischer, A.3    Boyer-Neumann, C.4    Vissac, A.5    Meyer, D.6
  • 4
    • 84941881474 scopus 로고    scopus 로고
    • GeneMatcher aids in the identification of a new malformation syndrome with intellectual disability, unique facial dysmorphisms, and skeletal and connective tissue abnormalities caused by de novo variants in HNRNPK
    • Au, P.Y.B., You, J., Caluseriu, O., Schwartzentruber, J., Majewski, J., Bernier, F.P., Ferguson, M., Valle, D., Parboosingh, J.S., Sobreira, N., et al. GeneMatcher aids in the identification of a new malformation syndrome with intellectual disability, unique facial dysmorphisms, and skeletal and connective tissue abnormalities caused by de novo variants in HNRNPK. Hum. Mutat. 36 (2015), 1009–1014.
    • (2015) Hum. Mutat. , vol.36 , pp. 1009-1014
    • Au, P.Y.B.1    You, J.2    Caluseriu, O.3    Schwartzentruber, J.4    Majewski, J.5    Bernier, F.P.6    Ferguson, M.7    Valle, D.8    Parboosingh, J.S.9    Sobreira, N.10
  • 5
    • 79960221972 scopus 로고    scopus 로고
    • What is the degree of segregation between striatonigral and striatopallidal projections?
    • Bertran-Gonzalez, J., Hervé, D., Girault, J.A., Valjent, E., What is the degree of segregation between striatonigral and striatopallidal projections?. Front. Neuroanat. 4 (2010), 1–9.
    • (2010) Front. Neuroanat. , vol.4 , pp. 1-9
    • Bertran-Gonzalez, J.1    Hervé, D.2    Girault, J.A.3    Valjent, E.4
  • 6
    • 84872492851 scopus 로고    scopus 로고
    • TACR1 genotypes predict fMRI response to alcohol cues and level of alcohol dependence
    • Blaine, S., Claus, E., Harlaar, N., Hutchison, K., TACR1 genotypes predict fMRI response to alcohol cues and level of alcohol dependence. Alcohol. Clin. Exp. Res. 37:Suppl 1 (2013), E125–E130.
    • (2013) Alcohol. Clin. Exp. Res. , vol.37 , pp. E125-E130
    • Blaine, S.1    Claus, E.2    Harlaar, N.3    Hutchison, K.4
  • 8
    • 84904961722 scopus 로고    scopus 로고
    • Direct and indirect pathways of basal ganglia: a critical reappraisal
    • Calabresi, P., Picconi, B., Tozzi, A., Ghiglieri, V., Di Filippo, M., Direct and indirect pathways of basal ganglia: a critical reappraisal. Nat. Neurosci. 17 (2014), 1022–1030.
    • (2014) Nat. Neurosci. , vol.17 , pp. 1022-1030
    • Calabresi, P.1    Picconi, B.2    Tozzi, A.3    Ghiglieri, V.4    Di Filippo, M.5
  • 9
    • 84859152259 scopus 로고    scopus 로고
    • Basal ganglia disorders associated with imbalances in the striatal striosome and matrix compartments
    • Crittenden, J.R., Graybiel, A.M., Basal ganglia disorders associated with imbalances in the striatal striosome and matrix compartments. Front. Neuroanat., 5, 2011, 59.
    • (2011) Front. Neuroanat. , vol.5 , pp. 59
    • Crittenden, J.R.1    Graybiel, A.M.2
  • 10
    • 84873733797 scopus 로고    scopus 로고
    • Concurrent activation of striatal direct and indirect pathways during action initiation
    • Cui, G., Jun, S.B., Jin, X., Pham, M.D., Vogel, S.S., Lovinger, D.M., Costa, R.M., Concurrent activation of striatal direct and indirect pathways during action initiation. Nature 494 (2013), 238–242.
    • (2013) Nature , vol.494 , pp. 238-242
    • Cui, G.1    Jun, S.B.2    Jin, X.3    Pham, M.D.4    Vogel, S.S.5    Lovinger, D.M.6    Costa, R.M.7
  • 13
    • 71849115759 scopus 로고    scopus 로고
    • Update on models of basal ganglia function and dysfunction
    • DeLong, M., Wichmann, T., Update on models of basal ganglia function and dysfunction. Parkinsonism Relat. Disord. 15:Suppl 3 (2009), S237–S240.
    • (2009) Parkinsonism Relat. Disord. , vol.15 , pp. S237-S240
    • DeLong, M.1    Wichmann, T.2
  • 14
    • 0033040497 scopus 로고    scopus 로고
    • Subventricular zone astrocytes are neural stem cells in the adult mammalian brain
    • Doetsch, F., Caillé, I., Lim, D.A., García-Verdugo, J.M., Alvarez-Buylla, A., Subventricular zone astrocytes are neural stem cells in the adult mammalian brain. Cell 97 (1999), 703–716.
    • (1999) Cell , vol.97 , pp. 703-716
    • Doetsch, F.1    Caillé, I.2    Lim, D.A.3    García-Verdugo, J.M.4    Alvarez-Buylla, A.5
  • 15
    • 84885773946 scopus 로고    scopus 로고
    • The LIM homeobox gene Isl1 is required for the correct development of the striatonigral pathway in the mouse
    • Ehrman, L.A., Mu, X., Waclaw, R.R., Yoshida, Y., Vorhees, C.V., Klein, W.H., Campbell, K., The LIM homeobox gene Isl1 is required for the correct development of the striatonigral pathway in the mouse. Proc. Natl. Acad. Sci. USA 110 (2013), E4026–E4035.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. E4026-E4035
    • Ehrman, L.A.1    Mu, X.2    Waclaw, R.R.3    Yoshida, Y.4    Vorhees, C.V.5    Klein, W.H.6    Campbell, K.7
  • 17
    • 0037434790 scopus 로고    scopus 로고
    • Cdc42 regulates GSK-3beta and adenomatous polyposis coli to control cell polarity
    • Etienne-Manneville, S., Hall, A., Cdc42 regulates GSK-3beta and adenomatous polyposis coli to control cell polarity. Nature 421 (2003), 753–756.
    • (2003) Nature , vol.421 , pp. 753-756
    • Etienne-Manneville, S.1    Hall, A.2
  • 24
    • 0033198522 scopus 로고    scopus 로고
    • c-Maf induces monocytic differentiation and apoptosis in bipotent myeloid progenitors
    • Hegde, S.P., Zhao, J., Ashmun, R.A., Shapiro, L.H., c-Maf induces monocytic differentiation and apoptosis in bipotent myeloid progenitors. Blood 94 (1999), 1578–1589.
    • (1999) Blood , vol.94 , pp. 1578-1589
    • Hegde, S.P.1    Zhao, J.2    Ashmun, R.A.3    Shapiro, L.H.4
  • 26
    • 11144357454 scopus 로고    scopus 로고
    • Gene expression nervous system atlas (GENSAT)
    • Heintz, N., Gene expression nervous system atlas (GENSAT). Nat. Neurosci., 7, 2004, 483.
    • (2004) Nat. Neurosci. , vol.7 , pp. 483
    • Heintz, N.1
  • 28
    • 42949175821 scopus 로고    scopus 로고
    • Identification of positionally distinct astrocyte subtypes whose identities are specified by a homeodomain code
    • Hochstim, C., Deneen, B., Lukaszewicz, A., Zhou, Q., Anderson, D.J., Identification of positionally distinct astrocyte subtypes whose identities are specified by a homeodomain code. Cell 133 (2008), 510–522.
    • (2008) Cell , vol.133 , pp. 510-522
    • Hochstim, C.1    Deneen, B.2    Lukaszewicz, A.3    Zhou, Q.4    Anderson, D.J.5
  • 29
    • 84893467539 scopus 로고    scopus 로고
    • Neuronal cell type-specific alternative splicing is regulated by the KH domain protein SLM1
    • Iijima, T., Iijima, Y., Witte, H., Scheiffele, P., Neuronal cell type-specific alternative splicing is regulated by the KH domain protein SLM1. J. Cell Biol. 204 (2014), 331–342.
    • (2014) J. Cell Biol. , vol.204 , pp. 331-342
    • Iijima, T.1    Iijima, Y.2    Witte, H.3    Scheiffele, P.4
  • 32
    • 84903574951 scopus 로고    scopus 로고
    • Bayesian approach to single-cell differential expression analysis
    • Kharchenko, P.V., Silberstein, L., Scadden, D.T., Bayesian approach to single-cell differential expression analysis. Nat. Methods 11 (2014), 740–742.
    • (2014) Nat. Methods , vol.11 , pp. 740-742
    • Kharchenko, P.V.1    Silberstein, L.2    Scadden, D.T.3
  • 33
    • 56349143278 scopus 로고    scopus 로고
    • Striatal plasticity and basal ganglia circuit function
    • Kreitzer, A.C., Malenka, R.C., Striatal plasticity and basal ganglia circuit function. Neuron 60 (2008), 543–554.
    • (2008) Neuron , vol.60 , pp. 543-554
    • Kreitzer, A.C.1    Malenka, R.C.2
  • 34
    • 84940460509 scopus 로고    scopus 로고
    • Coding the direct/indirect pathways by D1 and D2 receptors is not valid for accumbens projections
    • Kupchik, Y.M., Brown, R.M., Heinsbroek, J.A., Lobo, M.K., Schwartz, D.J., Kalivas, P.W., Coding the direct/indirect pathways by D1 and D2 receptors is not valid for accumbens projections. Nat. Neurosci. 18 (2015), 1230–1232.
    • (2015) Nat. Neurosci. , vol.18 , pp. 1230-1232
    • Kupchik, Y.M.1    Brown, R.M.2    Heinsbroek, J.A.3    Lobo, M.K.4    Schwartz, D.J.5    Kalivas, P.W.6
  • 35
    • 84884814617 scopus 로고    scopus 로고
    • CUG-BP, Elav-like family (CELF)-mediated alternative splicing regulation in the brain during health and disease
    • Ladd, A.N., CUG-BP, Elav-like family (CELF)-mediated alternative splicing regulation in the brain during health and disease. Mol. Cell. Neurosci. 56 (2013), 456–464.
    • (2013) Mol. Cell. Neurosci. , vol.56 , pp. 456-464
    • Ladd, A.N.1
  • 36
    • 35548940665 scopus 로고    scopus 로고
    • Neuronal regulation of alternative pre-mRNA splicing
    • Li, Q., Lee, J.-A., Black, D.L., Neuronal regulation of alternative pre-mRNA splicing. Nat. Rev. Neurosci. 8 (2007), 819–831.
    • (2007) Nat. Rev. Neurosci. , vol.8 , pp. 819-831
    • Li, Q.1    Lee, J.-A.2    Black, D.L.3
  • 37
    • 33344470365 scopus 로고    scopus 로고
    • FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains
    • Lobo, M.K., Karsten, S.L., Gray, M., Geschwind, D.H., Yang, X.W., FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains. Nat. Neurosci. 9 (2006), 443–452.
    • (2006) Nat. Neurosci. , vol.9 , pp. 443-452
    • Lobo, M.K.1    Karsten, S.L.2    Gray, M.3    Geschwind, D.H.4    Yang, X.W.5
  • 39
    • 79251569290 scopus 로고    scopus 로고
    • From reinforcement learning models to psychiatric and neurological disorders
    • Maia, T.V., Frank, M.J., From reinforcement learning models to psychiatric and neurological disorders. Nat. Neurosci. 14 (2011), 154–162.
    • (2011) Nat. Neurosci. , vol.14 , pp. 154-162
    • Maia, T.V.1    Frank, M.J.2
  • 40
    • 0037335461 scopus 로고    scopus 로고
    • Segregated expression of AMPA-type glutamate receptors and glutamate transporters defines distinct astrocyte populations in the mouse hippocampus
    • Matthias, K., Kirchhoff, F., Seifert, G., Hüttmann, K., Matyash, M., Kettenmann, H., Steinhäuser, C., Segregated expression of AMPA-type glutamate receptors and glutamate transporters defines distinct astrocyte populations in the mouse hippocampus. J. Neurosci. 23 (2003), 1750–1758.
    • (2003) J. Neurosci. , vol.23 , pp. 1750-1758
    • Matthias, K.1    Kirchhoff, F.2    Seifert, G.3    Hüttmann, K.4    Matyash, M.5    Kettenmann, H.6    Steinhäuser, C.7
  • 42
    • 84904634327 scopus 로고    scopus 로고
    • Reassessing models of basal ganglia function and dysfunction
    • Nelson, A.B., Kreitzer, A.C., Reassessing models of basal ganglia function and dysfunction. Annu. Rev. Neurosci. 37 (2014), 117–135.
    • (2014) Annu. Rev. Neurosci. , vol.37 , pp. 117-135
    • Nelson, A.B.1    Kreitzer, A.C.2
  • 44
    • 1942520195 scopus 로고    scopus 로고
    • Dissociable roles of ventral and dorsal striatum in instrumental conditioning
    • O'Doherty, J., Dayan, P., Schultz, J., Deichmann, R., Friston, K., Dolan, R.J., Dissociable roles of ventral and dorsal striatum in instrumental conditioning. Science 304 (2004), 452–454.
    • (2004) Science , vol.304 , pp. 452-454
    • O'Doherty, J.1    Dayan, P.2    Schultz, J.3    Deichmann, R.4    Friston, K.5    Dolan, R.J.6
  • 48
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen, A.A., Nowakowski, T.J., Shuga, J., Wang, X., Leyrat, A.A., Lui, J.H., Li, N., Szpankowski, L., Fowler, B., Chen, P., et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat. Biotechnol. 32 (2014), 1053–1058.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 1053-1058
    • Pollen, A.A.1    Nowakowski, T.J.2    Shuga, J.3    Wang, X.4    Leyrat, A.A.5    Lui, J.H.6    Li, N.7    Szpankowski, L.8    Fowler, B.9    Chen, P.10
  • 49
    • 84864584881 scopus 로고    scopus 로고
    • Cadherins and neuropsychiatric disorders
    • Redies, C., Hertel, N., Hübner, C.A., Cadherins and neuropsychiatric disorders. Brain Res. 1470 (2012), 130–144.
    • (2012) Brain Res. , vol.1470 , pp. 130-144
    • Redies, C.1    Hertel, N.2    Hübner, C.A.3
  • 50
    • 80054827869 scopus 로고    scopus 로고
    • Transcriptional and epigenetic mechanisms of addiction
    • Robison, A.J., Nestler, E.J., Transcriptional and epigenetic mechanisms of addiction. Nat. Rev. Neurosci. 12 (2011), 623–637.
    • (2011) Nat. Rev. Neurosci. , vol.12 , pp. 623-637
    • Robison, A.J.1    Nestler, E.J.2
  • 51
    • 57349185900 scopus 로고    scopus 로고
    • Astroglial metabolic networks sustain hippocampal synaptic transmission
    • Rouach, N., Koulakoff, A., Abudara, V., Willecke, K., Giaume, C., Astroglial metabolic networks sustain hippocampal synaptic transmission. Science 322 (2008), 1551–1555.
    • (2008) Science , vol.322 , pp. 1551-1555
    • Rouach, N.1    Koulakoff, A.2    Abudara, V.3    Willecke, K.4    Giaume, C.5
  • 55
    • 40849085572 scopus 로고    scopus 로고
    • Drd1a-tdTomato BAC transgenic mice for simultaneous visualization of medium spiny neurons in the direct and indirect pathways of the basal ganglia
    • Shuen, J.A., Chen, M., Gloss, B., Calakos, N., Drd1a-tdTomato BAC transgenic mice for simultaneous visualization of medium spiny neurons in the direct and indirect pathways of the basal ganglia. J. Neurosci. 28 (2008), 2681–2685.
    • (2008) J. Neurosci. , vol.28 , pp. 2681-2685
    • Shuen, J.A.1    Chen, M.2    Gloss, B.3    Calakos, N.4
  • 56
    • 84891507892 scopus 로고    scopus 로고
    • Tachykinins and their receptors: contributions to physiological control and the mechanisms of disease
    • Steinhoff, M.S., von Mentzer, B., Geppetti, P., Pothoulakis, C., Bunnett, N.W., Tachykinins and their receptors: contributions to physiological control and the mechanisms of disease. Physiol. Rev. 94 (2014), 265–301.
    • (2014) Physiol. Rev. , vol.94 , pp. 265-301
    • Steinhoff, M.S.1    von Mentzer, B.2    Geppetti, P.3    Pothoulakis, C.4    Bunnett, N.W.5
  • 57
    • 54049091941 scopus 로고    scopus 로고
    • Neuroligins and neurexins link synaptic function to cognitive disease
    • Südhof, T.C., Neuroligins and neurexins link synaptic function to cognitive disease. Nature 455 (2008), 903–911.
    • (2008) Nature , vol.455 , pp. 903-911
    • Südhof, T.C.1
  • 58
    • 77956738411 scopus 로고    scopus 로고
    • Coordinated expression of dopamine receptors in neostriatal medium spiny neurons
    • Surmeier, D.J., Yan, Z., Song, W.J., Coordinated expression of dopamine receptors in neostriatal medium spiny neurons. Adv. Pharmacol. 42 (1998), 1020–1023.
    • (1998) Adv. Pharmacol. , vol.42 , pp. 1020-1023
    • Surmeier, D.J.1    Yan, Z.2    Song, W.J.3
  • 60
    • 70350410103 scopus 로고    scopus 로고
    • An object-oriented framework for robust multivariate analysis
    • Todorov, V., Filzmoser, P., An object-oriented framework for robust multivariate analysis. J. Stat. Softw. 32 (2009), 1–47.
    • (2009) J. Stat. Softw. , vol.32 , pp. 1-47
    • Todorov, V.1    Filzmoser, P.2
  • 62
    • 84897528076 scopus 로고    scopus 로고
    • Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing
    • Treutlein, B., Gokce, O., Quake, S.R., Südhof, T.C., Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing. Proc. Natl. Acad. Sci. USA 111 (2014), E1291–E1299.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E1291-E1299
    • Treutlein, B.1    Gokce, O.2    Quake, S.R.3    Südhof, T.C.4
  • 64
    • 77649162059 scopus 로고    scopus 로고
    • Direct conversion of fibroblasts to functional neurons by defined factors
    • Vierbuchen, T., Ostermeier, A., Pang, Z.P., Kokubu, Y., Südhof, T.C., Wernig, M., Direct conversion of fibroblasts to functional neurons by defined factors. Nature 463 (2010), 1035–1041.
    • (2010) Nature , vol.463 , pp. 1035-1041
    • Vierbuchen, T.1    Ostermeier, A.2    Pang, Z.P.3    Kokubu, Y.4    Südhof, T.C.5    Wernig, M.6
  • 66
    • 14544277546 scopus 로고    scopus 로고
    • Identification and analysis of alternative splicing events conserved in human and mouse
    • Yeo, G.W., Van Nostrand, E., Holste, D., Poggio, T., Burge, C.B., Identification and analysis of alternative splicing events conserved in human and mouse. Proc. Natl. Acad. Sci. USA 102 (2005), 2850–2855.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 2850-2855
    • Yeo, G.W.1    Van Nostrand, E.2    Holste, D.3    Poggio, T.4    Burge, C.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.