메뉴 건너뛰기




Volumn 10, Issue JUNE, 2016, Pages

VoxelStats: A MATLAB package for multi-modal voxel-wise brain image analysis

Author keywords

Alzheimer's disease; Generalized linear model; Longitudinal analysis; Mixed effect model; Multimodal analysis; ROC analysis; Voxel wise analysis

Indexed keywords

FLORBETAPIR F 18;

EID: 84978755685     PISSN: None     EISSN: 16625196     Source Type: Journal    
DOI: 10.3389/fninf.2016.00020     Document Type: Article
Times cited : (64)

References (40)
  • 2
    • 84950992864 scopus 로고    scopus 로고
    • Regional brain hypometabolism is unrelated to regional amyloid plaque burden
    • Altmann, A., Ng, B., Landau, S. M., Jagust, W. J., and Greicius, M. D. (2015). Regional brain hypometabolism is unrelated to regional amyloid plaque burden. Brain 138(Pt 12), 3734-3746. doi: 10.1093/brain/awv278
    • (2015) Brain , vol.138 , pp. 3734-3746
    • Altmann, A.1    Ng, B.2    Landau, S.M.3    Jagust, W.J.4    Greicius, M.D.5
  • 3
    • 34548832230 scopus 로고    scopus 로고
    • A fast diffeomorphic image registration algorithm
    • Ashburner, J. (2007). A fast diffeomorphic image registration algorithm. Neuroimage 38, 95-113. doi: 10.1016/j.neuroimage.2007.07.007
    • (2007) Neuroimage , vol.38 , pp. 95-113
    • Ashburner, J.1
  • 4
    • 38849187993 scopus 로고    scopus 로고
    • Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain
    • Avants, B., Epstein, C., Grossman, M., and Gee, J. (2008). Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12, 26-41. doi: 10.1016/j.media.2007.06.004
    • (2008) Med. Image Anal , vol.12 , pp. 26-41
    • Avants, B.1    Epstein, C.2    Grossman, M.3    Gee, J.4
  • 6
    • 84858060836 scopus 로고    scopus 로고
    • The pipeline system for Octave and Matlab (PSOM): A lightweight scripting framework and execution engine for scientific workflows
    • Bellec, P., Lavoie-Courchesne, S., Dickinson, P., Lerch, J. P., Zijdenbos, A. P., and Evans, A. C. (2012). The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows. Front. Neuroinform. 6:7. doi: 10.3389/fninf.2012.00007
    • (2012) Front. Neuroinform , vol.6 , pp. 7
    • Bellec, P.1    Lavoie-Courchesne, S.2    Dickinson, P.3    Lerch, J.P.4    Zijdenbos, A.P.5    Evans, A.C.6
  • 8
    • 84978648108 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Methodol. 57, 289-300.
    • (1995) J. R. Stat. Soc. B Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 9
    • 84940974636 scopus 로고    scopus 로고
    • Optimal target region for subject classification on the basis of amyloid PET images
    • Carbonell, F., Zijdenbos, A. P., Charil, A., Grand'Maison, M., and Bedell, B. J. (2015). Optimal target region for subject classification on the basis of amyloid PET images. J. Nucl. Med. 56, 1351-1358. doi: 10.2967/jnumed.115.158774
    • (2015) J. Nucl. Med , vol.56 , pp. 1351-1358
    • Carbonell, F.1    Zijdenbos, A.P.2    Charil, A.3    Grand'Maison, M.4    Bedell, B.J.5
  • 10
    • 33751111992 scopus 로고    scopus 로고
    • Biological parametric mapping: A statistical toolbox for multimodality brain image analysis
    • Casanova, R., Srikanth, R., Baer, A., Laurienti, P. J., Burdette, J. H., Hayasaka, S., et al. (2007). Biological parametric mapping: a statistical toolbox for multimodality brain image analysis. Neuroimage 34, 137-143. doi: 10.1016/j.neuroimage.2006.09.011
    • (2007) Neuroimage , vol.34 , pp. 137-143
    • Casanova, R.1    Srikanth, R.2    Baer, A.3    Laurienti, P.J.4    Burdette, J.H.5    Hayasaka, S.6
  • 11
    • 72449133293 scopus 로고    scopus 로고
    • Basal cerebral metabolism may modulate the cognitive effects of Abeta in mild cognitive impairment: An example of brain reserve
    • Cohen, A. D., Price, J. C., Weissfeld, L. A., James, J., Rosario, B. L., Bi, W., et al. (2009). Basal cerebral metabolism may modulate the cognitive effects of Abeta in mild cognitive impairment: an example of brain reserve. J. Neurosci. 29, 14770-14778. doi: 10.1523/JNEUROSCI.3669-09.2009
    • (2009) J. Neurosci , vol.29 , pp. 14770-14778
    • Cohen, A.D.1    Price, J.C.2    Weissfeld, L.A.3    James, J.4    Rosario, B.L.5    Bi, W.6
  • 12
    • 0028287162 scopus 로고
    • Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space
    • Collins, D. L., Neelin, P., Peters, T. M., and Evans, A. C. (1995). Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space. J. Comput. Assist. Tomogr. 18, 192-205. doi: 10.1097/00004728-199403000-00005
    • (1995) J. Comput. Assist. Tomogr , vol.18 , pp. 192-205
    • Collins, D.L.1    Neelin, P.2    Peters, T.M.3    Evans, A.C.4
  • 13
    • 0030175198 scopus 로고    scopus 로고
    • AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages
    • Cox, R. W. (1996). AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 29, 162-173. doi: 10.1006/cbmr.1996.0014
    • (1996) Comput. Biomed. Res , vol.29 , pp. 162-173
    • Cox, R.W.1
  • 15
    • 33847062118 scopus 로고    scopus 로고
    • Amyloid, hypometabolism, and cognition in Alzheimer disease: An [11C]PIB and [18F]FDG PET study
    • Edison, P., Archer, H. A., Hinz, R., Hammers, A., Pavese, N., Tai, Y. F., et al. (2007). Amyloid, hypometabolism, and cognition in Alzheimer disease: an [11C]PIB and [18F]FDG PET study. Neurology 68, 501-508. doi: 10.1212/01.wnl.0000244749.20056.d4
    • (2007) Neurology , vol.68 , pp. 501-508
    • Edison, P.1    Archer, H.A.2    Hinz, R.3    Hammers, A.4    Pavese, N.5    Tai, Y.F.6
  • 16
    • 33749506795 scopus 로고    scopus 로고
    • Two-year follow-up of amyloid deposition in patients with Alzheimer's disease
    • Engler, H., Forsberg, A., Almkvist, O., Blomquist, G., Larsson, E., Savitcheva, I., et al. (2006). Two-year follow-up of amyloid deposition in patients with Alzheimer's disease. Brain 129, 2856-2866. doi: 10.1093/brain/awl178
    • (2006) Brain , vol.129 , pp. 2856-2866
    • Engler, H.1    Forsberg, A.2    Almkvist, O.3    Blomquist, G.4    Larsson, E.5    Savitcheva, I.6
  • 17
    • 84862997809 scopus 로고    scopus 로고
    • FreeSurfer
    • Fischl, B. (2012). FreeSurfer. Neuroimage 62, 774-781. doi: 10.1016/j.neuroimage.2012.01.021
    • (2012) Neuroimage , vol.62 , pp. 774-781
    • Fischl, B.1
  • 18
    • 84958542310 scopus 로고    scopus 로고
    • Beta-amyloid, hippocampal atrophy and their relation to longitudinal brain change in cognitively normal individuals
    • Fletcher, E., Villeneuve, S., Maillard, P., Harvey, D., Reed, B., Jagust, W., et al. (2016). Beta-amyloid, hippocampal atrophy and their relation to longitudinal brain change in cognitively normal individuals. Neurobiol. Aging 40, 173-180. doi: 10.1016/j.neurobiolaging.2016.01.133
    • (2016) Neurobiol. Aging , vol.40 , pp. 173-180
    • Fletcher, E.1    Villeneuve, S.2    Maillard, P.3    Harvey, D.4    Reed, B.5    Jagust, W.6
  • 19
    • 77957960096 scopus 로고    scopus 로고
    • Unbiased average age-appropriate atlases for pediatric studies
    • Fonov, V., Evans, A. C., Botteron, K., Almli, C. R., McKinstry, R. C., and Collins, D. L. (2011). Unbiased average age-appropriate atlases for pediatric studies. Neuroimage 54, 313-327. doi: 10.1016/j.neuroimage.2010.07.033
    • (2011) Neuroimage , vol.54 , pp. 313-327
    • Fonov, V.1    Evans, A.C.2    Botteron, K.3    Almli, C.R.4    McKinstry, R.C.5    Collins, D.L.6
  • 20
    • 0029301847 scopus 로고
    • Commentary and opinion: II. Statistical parametric mapping: Ontology and current issues
    • Friston, K. J. (1995). Commentary and opinion: II. Statistical parametric mapping: ontology and current issues. J. Cereb. Blood Flow Metab. 15, 361-370. doi: 10.1038/jcbfm.1995.45
    • (1995) J. Cereb. Blood Flow Metab. , vol.15 , pp. 361-370
    • Friston, K.J.1
  • 21
    • 82755179444 scopus 로고    scopus 로고
    • Cognition, glucose metabolism and amyloid burden in Alzheimer's disease
    • Furst, A. J., Rabinovici, G. D., Rostomian, A. H., Steed, T., Alkalay, A., Racine, C., et al. (2012). Cognition, glucose metabolism and amyloid burden in Alzheimer's disease. Neurobiol. Aging 33, 215-225. doi: 10.1016/j.neurobiolaging.2010.03.011
    • (2012) Neurobiol. Aging , vol.33 , pp. 215-225
    • Furst, A.J.1    Rabinovici, G.D.2    Rostomian, A.H.3    Steed, T.4    Alkalay, A.5    Racine, C.6
  • 22
    • 78650177217 scopus 로고    scopus 로고
    • Mindfulness practice leads to increases in regional brain gray matter density
    • Hölzel, B. K., Carmody, J., Vangel, M., Congleton, C., Yerramsetti, S. M., Gard, T., et al. (2011). Mindfulness practice leads to increases in regional brain gray matter density. Psychiatry Res. 191, 36-43. doi: 10.1016/j.pscychresns.2010.08.006
    • (2011) Psychiatry Res , vol.191 , pp. 36-43
    • Hölzel, B.K.1    Carmody, J.2    Vangel, M.3    Congleton, C.4    Yerramsetti, S.M.5    Gard, T.6
  • 23
    • 84872379077 scopus 로고    scopus 로고
    • Tracking pathophysiological processes in Alzheimer's disease: An updated hypothetical model of dynamic biomarkers
    • Jack, C. R., Knopman, D. S., Jagust, W. J., Petersen, R. C., Weiner, M. W., Aisen, P. S., et al. (2013). Tracking pathophysiological processes in Alzheimer's disease: an updated hypothetical model of dynamic biomarkers. Lancet Neurol. 12, 207-216. doi: 10.1016/S1474-4422(12)70291-0
    • (2013) Lancet Neurol , vol.12 , pp. 207-216
    • Jack, C.R.1    Knopman, D.S.2    Jagust, W.J.3    Petersen, R.C.4    Weiner, M.W.5    Aisen, P.S.6
  • 24
    • 72049130805 scopus 로고    scopus 로고
    • Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade
    • Jack, C. R., Knopman, D. S., Jagust, W. J., Shaw, L. M., Aisen, P. S., Weiner, M. W., et al. (2010). Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade. Lancet Neurol. 9, 119-128. doi: 10.1016/S1474-4422(09)70299-6
    • (2010) Lancet Neurol , vol.9 , pp. 119-128
    • Jack, C.R.1    Knopman, D.S.2    Jagust, W.J.3    Shaw, L.M.4    Aisen, P.S.5    Weiner, M.W.6
  • 25
    • 0036425968 scopus 로고    scopus 로고
    • Improved optimization for the robust and accurate linear registration and motion correction of brain images
    • Jenkinson, M., Bannister, P., Brady, M., and Smith, S. (2002). Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage 17, 825-841. doi: 10.1006/nimg.2002.1132
    • (2002) Neuroimage , vol.17 , pp. 825-841
    • Jenkinson, M.1    Bannister, P.2    Brady, M.3    Smith, S.4
  • 26
    • 0035384136 scopus 로고    scopus 로고
    • A global optimisation method for robust affine registration of brain images
    • Jenkinson, M., and Smith, S. (2001). A global optimisation method for robust affine registration of brain images. Med. Image Anal. 5, 143-156. doi: 10.1016/S1361-8415(01)00036-6
    • (2001) Med. Image Anal , vol.5 , pp. 143-156
    • Jenkinson, M.1    Smith, S.2
  • 27
    • 84933045949 scopus 로고    scopus 로고
    • A versatile software package for inter-subject correlation based analyses of fMRI
    • Kauppi, J.-P., Pajula, J., and Tohka, J. (2014). A versatile software package for inter-subject correlation based analyses of fMRI.Front. Neuroinform. 8:2. doi: 10.3389/fninf.2014.00002
    • (2014) Front. Neuroinform , vol.8 , pp. 2
    • Kauppi, J.-P.1    Pajula, J.2    Tohka, J.3
  • 28
    • 84903936942 scopus 로고    scopus 로고
    • Association of hypometabolism and amyloid levels in aging, normal subjects
    • Lowe, V. J., Weigand, S. D., Senjem, M. L., Vemuri, P., Jordan, L., Kantarci, K., et al. (2014). Association of hypometabolism and amyloid levels in aging, normal subjects. Neurology 82, 1959-1967. doi: 10.1212/WNL.0000000000000467
    • (2014) Neurology , vol.82 , pp. 1959-1967
    • Lowe, V.J.1    Weigand, S.D.2    Senjem, M.L.3    Vemuri, P.4    Jordan, L.5    Kantarci, K.6
  • 29
    • 34247528547 scopus 로고    scopus 로고
    • Analysis of functional magnetic resonance imaging in python
    • Millman, K. J., and Brett, M. (2007). Analysis of functional magnetic resonance imaging in python. Comput. Sci. Eng. 9, 52-55. doi: 10.1109/MCSE.2007.46
    • (2007) Comput. Sci. Eng , vol.9 , pp. 52-55
    • Millman, K.J.1    Brett, M.2
  • 30
    • 34547399211 scopus 로고    scopus 로고
    • Integrating VBM into the General Linear Model with voxelwise anatomical covariates
    • Oakes, T. R., Fox, A. S., Johnstone, T., Chung, M. K., Kalin, N., and Davidson, R. J. (2007). Integrating VBM into the General Linear Model with voxelwise anatomical covariates. Neuroimage 34, 500-508. doi: 10.1016/j.neuroimage.2006.10.007
    • (2007) Neuroimage , vol.34 , pp. 500-508
    • Oakes, T.R.1    Fox, A.S.2    Johnstone, T.3    Chung, M.K.4    Kalin, N.5    Davidson, R.J.6
  • 31
    • 84863197449 scopus 로고    scopus 로고
    • Amyloid burden and metabolic function in early-onset Alzheimer's disease: Parietal lobe involvement
    • Ossenkoppele, R., Zwan, M. D., Tolboom, N., van Assema, D. M. E., Adriaanse, S. F., Kloet, R. W., et al. (2012). Amyloid burden and metabolic function in early-onset Alzheimer's disease: parietal lobe involvement. Brain 135, 2115-2125. doi: 10.1093/brain/aws113
    • (2012) Brain , vol.135 , pp. 2115-2125
    • Ossenkoppele, R.1    Zwan, M.D.2    Tolboom, N.3    van Assema, D.M.E.4    Adriaanse, S.F.5    Kloet, R.W.6
  • 32
    • 84961700362 scopus 로고    scopus 로고
    • Amyloid-β and hyperphosphorylated tau synergy drives metabolic decline in preclinical Alzheimer's disease
    • [Epub ahead of print]
    • Pascoal, T. A., Mathotaarachchi, S., Mohades, S., Benedet, A. L., Chung, C.-O., Shin, M., et al. (2016). Amyloid-β and hyperphosphorylated tau synergy drives metabolic decline in preclinical Alzheimer's disease. Mol. Psychiatry. doi: 10.1038/mp.2016.37. [Epub ahead of print].
    • (2016) Mol. Psychiatry
    • Pascoal, T.A.1    Mathotaarachchi, S.2    Mohades, S.3    Benedet, A.L.4    Chung, C.-O.5    Shin, M.6
  • 33
    • 77249098331 scopus 로고    scopus 로고
    • Increased metabolic vulnerability in early-onset Alzheimer's disease is not related to amyloid burden
    • Rabinovici, G. D., Furst, A. J., Alkalay, A., Racine, C. A., O'Neil, J. P., Janabi, M., et al. (2010). Increased metabolic vulnerability in early-onset Alzheimer's disease is not related to amyloid burden. Brain 133, 512-528. doi: 10.1093/brain/awp326
    • (2010) Brain , vol.133 , pp. 512-528
    • Rabinovici, G.D.1    Furst, A.J.2    Alkalay, A.3    Racine, C.A.4    O'Neil, J.P.5    Janabi, M.6
  • 35
    • 79151484016 scopus 로고    scopus 로고
    • Cross-sectional and longitudinal assessment of structural brain alterations in melancholic depression
    • Soriano-Mas, C., Hernández-Ribas, R., Pujol, J., Urretavizcaya, M., Deus, J., Harrison, B. J., et al. (2011). Cross-sectional and longitudinal assessment of structural brain alterations in melancholic depression. Biol. Psychiatry 69, 318-325. doi: 10.1016/j.biopsych.2010.07.029
    • (2011) Biol. Psychiatry , vol.69 , pp. 318-325
    • Soriano-Mas, C.1    Hernández-Ribas, R.2    Pujol, J.3    Urretavizcaya, M.4    Deus, J.5    Harrison, B.J.6
  • 37
    • 0026776405 scopus 로고
    • Rapid automated algorithm for aligning and reslicing PET images
    • Woods, R. P., Cherry, S. R., and Mazziotta, J. C. (1992). Rapid automated algorithm for aligning and reslicing PET images. J. Comput. Assist. Tomogr. 16, 620-633. doi: 10.1097/00004728-199207000-00024
    • (1992) J. Comput. Assist. Tomogr , vol.16 , pp. 620-633
    • Woods, R.P.1    Cherry, S.R.2    Mazziotta, J.C.3
  • 39
    • 0029931242 scopus 로고    scopus 로고
    • A unified statistical approach for determining significant signals in images of cerebral activation
    • Worsley, K. J., Marrett, S., Neelin, P., Vandal, A. C., Friston, K. J., and Evans, A. C. (1996). A unified statistical approach for determining significant signals in images of cerebral activation. Hum. Brain Mapp. 4, 58-73.
    • (1996) Hum. Brain Mapp , vol.4 , pp. 58-73
    • Worsley, K.J.1    Marrett, S.2    Neelin, P.3    Vandal, A.C.4    Friston, K.J.5    Evans, A.C.6
  • 40
    • 0036826508 scopus 로고    scopus 로고
    • Automatic "pipeline" analysis of 3-D MRI data for clinical trials: Application to multiple sclerosis
    • Zijdenbos, A. P., Forghani, R., and Evans, A. C. (2002). Automatic "pipeline" analysis of 3-D MRI data for clinical trials: application to multiple sclerosis. IEEE Trans. Med. Imaging 21, 1280-1291. doi: 10.1109/TMI.2002.806283
    • (2002) IEEE Trans. Med. Imaging , vol.21 , pp. 1280-1291
    • Zijdenbos, A.P.1    Forghani, R.2    Evans, A.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.