메뉴 건너뛰기
eNeuro
Volumn 2, Issue 1, 2015, Pages
Neutube 1.0: A new design for efficient neuron reconstruction software based on the swc format
Author keywords

Bioimage informatics; Neuron tracing; SWC; User friendly software
Indexed keywords

EID: 84978402872     PISSN: None     EISSN: 23732822     Source Type: Journal    
DOI: 10.1523/ENEURO.0049-14.2014     Document Type: Article
Times cited : (182)
References (25)
  • 1
    • 34548458204 scopus 로고    scopus 로고
    • NeuroMorpho.Org: A central resource for neuronal morphologies
    • Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.org: a central resource for neuronal morphologies. J Neurosci 27:9247–9251. CrossRef Medline
    • (2007) J Neurosci , vol.27 , pp. 9247-9251
    • Ascoli, G.A.1    Donohue, D.E.2    Halavi, M.3
  • 2
    • 67749114418 scopus 로고    scopus 로고
    • Order independent transparency with dual depth peeling
    • Bavoil L, Myers K (2008) Order independent transparency with dual depth peeling. NVIDIA OpenGL SDK:1–12.
    • (2008) NVIDIA Opengl SDK , pp. 1-12
    • Bavoil, L.1    Myers, K.2
  • 5
    • 84895165380 scopus 로고    scopus 로고
    • Structured synaptic connectivity between hippocampal regions
    • Druckmann S, Feng L, Lee B, Yook C, Zhao T, Magee JC, Kim J (2014) Structured synaptic connectivity between hippocampal regions. Neuron 81:629–640. CrossRef Medline
    • (2014) Neuron , vol.81 , pp. 629-640
    • Druckmann, S.1    Feng, L.2    Lee, B.3    Yook, C.4    Zhao, T.5    Magee, J.C.6    Kim, J.7
  • 6
    • 15544387146 scopus 로고    scopus 로고
    • Progress in functional neuroanatomy: Precise automatic geometric reconstruction of neuronal morphology from confocal image stacks
    • Evers JF, Schmitt S, Sibila M, Duch C (2005) Progress in functional neuroanatomy: precise automatic geometric reconstruction of neuronal morphology from confocal image stacks. J Neurophysiol 93:2331–2342.CrossRef
    • (2005) J Neurophysiol , vol.93 , pp. 2331-2342
    • Evers, J.F.1    Schmitt, S.2    Sibila, M.3    Duch, C.4
  • 7
    • 84923833833 scopus 로고    scopus 로고
    • Using mammalian GFP reconstitution across synaptic partners (MGRASP) to map synaptic connectivity in the mouse brain
    • Feng L, Kwon O, Lee B, Oh WC, Kim J (2014) Using mammalian GFP reconstitution across synaptic partners (mGRASP) to map synaptic connectivity in the mouse brain. Nat Protoc 9:2425–2437. CrossRef Medline
    • (2014) Nat Protoc , vol.9 , pp. 2425-2437
    • Feng, L.1    Kwon, O.2    Lee, B.3    Oh, W.C.4    Kim, J.5
  • 8
    • 84863542265 scopus 로고    scopus 로고
    • Improved synapse detection for mGRASP-assisted brain connectivity mapping
    • Feng L, Zhao T, Kim J (2012) Improved synapse detection for mGRASP-assisted brain connectivity mapping. Bioinformatics 28: i25–i31. CrossRef Medline
    • (2012) Bioinformatics , vol.28 , pp. i25-i31
    • Feng, L.1    Zhao, T.2    Kim, J.3
  • 9
    • 33744727661 scopus 로고    scopus 로고
    • Volume rendering versus maximum intensity projection in CT angiography: What works best, when, and Why1
    • CrossRef Medline
    • Fishman EK, Ney DR, Heath DG, Corl FM, Horton KM, Johnson PT (2006) Volume rendering versus maximum intensity projection in CT angiography: what works best, when, and Why1. Radiograph-ics 26:905–922. CrossRef Medline
    • (2006) Radiograph-Ics , vol.26 , pp. 905-922
    • Fishman, E.K.1    Ney, D.R.2    Heath, D.G.3    Corl, F.M.4    Horton, K.M.5    Johnson, P.T.6
  • 10
    • 79958146216 scopus 로고    scopus 로고
    • The DIADEM metric: Comparing multiple reconstructions of the same neuron
    • Gillette TA, Brown KM, Ascoli GA (2011) The DIADEM metric: comparing multiple reconstructions of the same neuron. Neuroinformatics 9:233–245. CrossRef Medline
    • (2011) Neuroinformatics , vol.9 , pp. 233-245
    • Gillette, T.A.1    Brown, K.M.2    Ascoli, G.A.3
  • 11
    • 0023173192 scopus 로고
    • A shortest augmenting path algorithm for dense and sparse linear assignment problems
    • Jonker R, Volgenant A (1987) A shortest augmenting path algorithm for dense and sparse linear assignment problems. Computing 38:325–340.CrossRef
    • (1987) Computing , vol.38 , pp. 325-340
    • Jonker, R.1    Volgenant, A.2
  • 12
    • 84856418376 scopus 로고    scopus 로고
    • MGRASP enables mapping mammalian synaptic connectivity with light microscopy
    • Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC (2012) mGRASP enables mapping mammalian synaptic connectivity with light microscopy. Nat Methods 9:96–102. CrossRef Medline
    • (2012) Nat Methods , vol.9 , pp. 96-102
    • Kim, J.1    Zhao, T.2    Petralia, R.S.3    Yu, Y.4    Peng, H.5    Myers, E.6    Magee, J.C.7
  • 13
    • 34548458204 scopus 로고    scopus 로고
    • NeuroMorpho.Org: A central resource for neuronal morphologies
    • Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.org: a central resource for neuronal morphologies. J Neurosci 27:9247–9251. CrossRef Medline
    • (2007) J Neurosci , vol.27 , pp. 9247-9251
    • Ascoli, G.A.1    Donohue, D.E.2    Halavi, M.3
  • 14
    • 84864028326 scopus 로고    scopus 로고
    • Visualization and analysis of 3D microscopic images
    • Long F, Zhou J, Peng H (2012) Visualization and analysis of 3D microscopic images. PLoS Comput Biol 8:e1002519.CrossRef Medline
    • (2012) Plos Comput Biol , vol.8
    • Long, F.1    Zhou, J.2    Peng, H.3
  • 15
    • 80051940280 scopus 로고    scopus 로고
    • Simple neurite tracer: Open source software for reconstruction, visualization and analysis of neuronal processes
    • Longair MH, Baker DA, Armstrong JD (2011) Simple neurite tracer: open source software for reconstruction, visualization and analysis of neuronal processes. Bioinformatics 27:2453–2454. CrossRef Medline
    • (2011) Bioinformatics , vol.27 , pp. 2453-2454
    • Longair, M.H.1    Baker, D.A.2    Armstrong, J.D.3
  • 16
    • 79958158724 scopus 로고    scopus 로고
    • The FARSIGHT trace editor: An open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions
    • Luisi J, Narayanaswamy A, Galbreath Z, Roysam B (2011) The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions. Neuroinformatics 9:305–315. CrossRef Medline
    • (2011) Neuroinformatics , vol.9 , pp. 305-315
    • Luisi, J.1    Narayanaswamy, A.2    Galbreath, Z.3    Roysam, B.4
  • 17
    • 77954289614 scopus 로고    scopus 로고
    • Neuron tracing in perspective
    • Meijering E (2010) Neuron tracing in perspective. Cytometry A 77: 693–704. CrossRef Medline
    • (2010) Cytometry A , vol.77 , pp. 693-704
    • Meijering, E.1
  • 19
    • 79958083819 scopus 로고    scopus 로고
    • Proof-editing is the bottleneck of 3D neuron reconstruction: The problem and solutions
    • Peng H, Long F, Zhao T, Myers E (2011) Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions. Neuroinformatics 9:103–105. CrossRef Medline
    • (2011) Neuroinformatics , vol.9 , pp. 103-105
    • Peng, H.1    Long, F.2    Zhao, T.3    Myers, E.4
  • 20
    • 77950679704 scopus 로고    scopus 로고
    • V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
    • Peng H, Ruan Z, Long F, Simpson JH, Myers EW (2010) V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotechnol 28:348–353. CrossRef Medline
    • (2010) Nat Biotechnol , vol.28 , pp. 348-353
    • Peng, H.1    Ruan, Z.2    Long, F.3    Simpson, J.H.4    Myers, E.W.5
  • 21
    • 34248652917 scopus 로고    scopus 로고
    • Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser scanning microscopy images
    • Rodriguez A, Ehlenberger DB, Hof PR, Wearne SL (2006) Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser scanning microscopy images. Nat Protoc 1:2152–2161. CrossRef Medline
    • (2006) Nat Protoc , vol.1 , pp. 2152-2161
    • Rodriguez, A.1    Ehlenberger, D.B.2    Hof, P.R.3    Wearne, S.L.4
  • 22
    • 34548458204 scopus 로고    scopus 로고
    • NeuroMorpho.Org: A central resource for neuronal morphologies
    • Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.org: a central resource for neuronal morphologies. J Neurosci 27:9247–9251. CrossRef Medline
    • (2007) J Neurosci , vol.27 , pp. 9247-9251
    • Ascoli, G.A.1    Donohue, D.E.2    Halavi, M.3
  • 23
    • 28844498390 scopus 로고    scopus 로고
    • New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales
    • Wearne SL, Rodriguez A, Ehlenberger DB, Rocher AB, Henderson SC, Hof PR (2005) New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales. Neuroscience 136:661–680. CrossRef Medline
    • (2005) Neuroscience , vol.136 , pp. 661-680
    • Wearne, S.L.1    Rodriguez, A.2    Ehlenberger, D.B.3    Rocher, A.B.4    Henderson, S.C.5    Hof, P.R.6
  • 24
    • 85046767900 scopus 로고    scopus 로고
    • Automatic neuron type identification by neurite localization in the drosophila medulla)
    • Zhao T, Plaza SM (2014) Automatic neuron type identification by neurite localization in the drosophila medulla). arXiv:1409.1892 [q-bio.NC]
    • (2014) Arxiv:1409.1892 [Q-Bio.Nc]
    • Zhao, T.1    Plaza, S.M.2
  • 25
    • 79958161539 scopus 로고    scopus 로고
    • Automated reconstruction of neuronal morphology based on local geometrical and global structural models
    • Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E (2011) Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics 9:247–261. CrossRef Medline
    • (2011) Neuroinformatics , vol.9 , pp. 247-261
    • Zhao, T.1    Xie, J.2    Amat, F.3    Clack, N.4    Ahammad, P.5    Peng, H.6    Long, F.7    Myers, E.8

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.