Natural genetic variability reduces recalcitrance in poplar

Biotechnology for Biofuels

Volumn 9, Issue 1, 2016, Pages

  Bhagia, Samarthya ^a,b,c   Muchero, Wellington ^c   Kumar, Rajeev ^b,c   Tuskan, Gerald A ^c   Wyman, Charles E ^a,b,c  

^a University of California Riverside ^*  (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

High throughput pretreatment and co hydrolysis; Lignin comparators; Liquid hot water pretreatment; Poplar ranks; Rare poplar variants

Indexed keywords

BIOFUELS; COMPARATOR CIRCUITS; COMPARATORS (OPTICAL); ENZYMATIC HYDROLYSIS; FEEDSTOCKS; FORESTRY; HYDROLYSIS; THROUGHPUT; WATER;

HOT WATER PRE TREATMENTS; LIGNOCELLULOSIC BIOMASS; LIQUID HOT WATER PRETREATMENT; PERFORMANCE RANKINGS; POPLAR RANKS; PRE-TREATMENT; PRETREATMENT TEMPERATURE; RARE POPLAR VARIANTS;

LIGNIN;

BIOFUEL; GENETIC VARIATION; HYDROLYSIS; LIGNIN; WASTE FACILITY; WATER TECHNOLOGY; WATER TREATMENT;

BIOCHEMISTRY; BIODIVERSITY; HYDROLYSIS; LIGNINS; POPULUS; PRETREATMENT;

POPULUS; POPULUS TRICHOCARPA;

EID: 84978116689     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-016-0521-2     Document Type: Article

References (33)

1. Lynd LR, Wyman CE, Gerngross TU. Biocommodity engineering. Biotechnol Prog. 1999;15(5):777-93.
2. Chen F, Dixon RA. Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol. 2007;25(7):759-61.
3. Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, et al. High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus. BMC Genom. 2015;16:24.
4. Muchero W, Chen J, Gunter LE, Jawdy S, Tuskan GA, Bryan AC, DiFazio S, Guo HB. Transcription factor which regulates flavonoid, phenylpropanoid, tyrosine, and tryptophan pathways. US Patent Application Number US20150353948.
5. Brown TR, Brown RC, Estes V. Commerical-scale production of lignocellulosic biofuels. in: chemical engineering progress. SBE Supplement: Lignocellulosic Biofuels edn: American Institute of Chemical Engineers; 2015: 62-4.
6. Brown TR, Brown RC. A review of cellulosic biofuel commercial-scale projects in the United States. Biofuels, Bioprod Biorefin. 2013;7(3):235-45.
7. Studer MH, DeMartini JD, Brethauer S, McKenzie HL, Wyman CE. Engineering of a high-throughput screening system to identify cellulosic biomass, pretreatments, and enzyme formulations that enhance sugar release. Biotechnol Bioeng. 2010;105(2):231-8.
8. Holtzapple M, Cognata M, Shu Y, Hendrickson C. Inhibition of Trichoderma reesei cellulase by sugars and solvents. Biotechnol Bioeng. 1990;36(3):275-87.
9. Yang B, Willies DM, Wyman CE. Changes in the enzymatic hydrolysis rate of Avicel cellulose with conversion. Biotechnol Bioeng. 2006;94(6):1122-8.
10. Ximenes E, Kim Y, Mosier N, Dien B, Ladisch M. Deactivation of cellulases by phenols. Enzyme Microb Technol. 2011;48(1):54-60.
11. Kumar R, Wyman CE. Strong cellulase inhibition by Mannan polysaccharides in cellulose conversion to sugars. Biotechnol Bioeng. 2014;111(7):1341-53.
12. Studer MH, DeMartini JD, Davis MF, Sykes RW, Davison B, Keller M, Tuskan GA, Wyman CE. Lignin content in natural Populus variants affects sugar release. Proc Natl Acad Sci USA. 2011;108(15):6300-5.
13. Karl JZ. Furfural processes. The chemistry and technology of furfural and its many by-products. Amsterdam: Elsevier Science BV; 2000. p. 43-6.
14. Rautalin A, Wilén C, Oy AA, Osakeyhtiö IV. Feeding biomass into pressure and related safety engineering: Technical Research Centre of Finland, Laboratory of Fuel and Process Technology; 1992.
15. Evans LM, Slavov GT, Rodgers-Melnick E, Martin J, Ranjan P, Muchero W, Brunner AM, Schackwitz W, Gunter L, Chen J-G, et al. Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. Nat Genet. 2014;46(10):1089-96.
16. Sluiter A, Hames B, Ruiz R, Scarlata C, Sluiter J, Templeton D, Crocker D. Determination of structural carbohydrates and lignin in biomass; Laboratory Analytical Procedure (LAP). NREL/TP-510 - 42618; 2008.
17. Overend RP, Chornet E, Gascoigne JA. Fractionation of Lignocellulosics by Steam-Aqueous Pretreatments [and Discussion]. Philos Trans Royal Soc Lon A. 1987;321(1561):523-36.
18. Selig M, Weiss N, Ji Y. Enzymatic Saccharification of Lignocellulosic Biomass. In: Laboratory Analytical Procedure (LAP); 2008.
19. Smith PK, Krohn RI, Hermanson GT, Mallia AK, Gartner FH, Provenzano MD, Fujimoto EK, Goeke NM, Olson BJ, Klenk DC. Measurement of protein using bicinchoninic acid. Anal Biochem. 1985;150(1):76-85.
20. Tukey J: Exploratory Data Analysis.(Limited Preliminary Edition) Addison-Wesley. Reading, Massachusetts; 1970.
21. Balan V. Current challenges in commercially producing biofuels from lignocellulosic biomass. ISRN Biotechnol. 2014;2014:463074.
22. Wei N, Oh EJ, Million G, Cate JHD, Jin Y-S. Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synthetic Biol. 2015;4(6):707-13.
23. Laluce C, Schenberg AC, Gallardo JC, Coradello LF, Pombeiro-Sponchiado SR. Advances and developments in strategies to improve strains of Saccharomyces cerevisiae and processes to obtain the lignocellulosic ethanol - a review. Applied Biochem Biotechnol. 2012;166(8):1908-26.
24. Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M. Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol. 2005;96(6):673-86.
25. Chundawat SPS, Beckham GT, Himmel ME, Dale BE. Deconstruction of lignocellulosic biomass to fuels and chemicals. Ann Rev Chem Biomol Eng. 2011;2(1):121-45.
26. Kumar R, Wyman CE. Physical and Chemical features of pretreated biomass that influence macro-/micro-accessibility and biological processing. Aqueous pretreatment of plant biomass for biological and chemical conversion to fuels and chemicals. Hoboken: Wiley; 2013. p. 281-310.
27. Savolainen O, Pyhäjärvi T, Knürr T. Gene flow and local adaptation in trees. Ann Rev Ecol Evol Syst. 2007;38(1):595-619.
28. McKown AD, Guy RD, Klapste J, Geraldes A, Friedmann M, Cronk QC, El-Kassaby YA, Mansfield SD, Douglas CJ. Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa. New Phytol. 2014;201(4):1263-76.
29. Boerjan W, Ralph J, Baucher M. Lignin biosynthesis. Ann Rev Plant Biol. 2003;54:519-46.
30. Sannigrahi P, Ragauskas AJ, Tuskan GA. Poplar as a feedstock for biofuels: a review of compositional characteristics. Biofuel Bioprod Bior. 2010;4(2):209-26.
31. Pu YQ, Kosa M, Kalluri UC, Tuskan GA, Ragauskas AJ. Challenges of the utilization of wood polymers: how can they be overcome? Appl Microbiol Biotechnol. 2011;91(6):1525-36.
32. Li H, Pu Y, Kumar R, Ragauskas AJ, Wyman CE. Investigation of lignin deposition on cellulose during hydrothermal pretreatment, its effect on cellulose hydrolysis, and underlying mechanisms. Biotechnol Bioeng. 2013;11(3):485-92.
33. Selig MJ, Viamajala S, Decker SR, Tucker MP, Himmel ME, Vinzant TB. Deposition of lignin droplets produced during dilute acid pretreatment of maize stems retards enzymatic hydrolysis of cellulose. Biotechnol Prog. 2007;23(6):1333-9.