Phylogenetic relationships in the Marcetia alliance (Melastomeae, Melastomataceae) and implications for generic circumscription

Botanical Journal of the Linnean Society

Volumn 181, Issue 4, 2016, Pages 585-609

  Rocha, Maria José R ^a   Batista, João A N ^a   Guimarães, Paulo J F ^b   Michelangeli, Fabián A ^c  

^a FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^b INSTITUTO DE PESQUISAS JARDIM BOTÂNICO DO RIO DE JANEIRO   (Brazil)

^c NEW YORK BOTANICAL GARDEN   (United States)

Author keywords

cerrado; character reconstruction; molecular markers; Neotropics; taxonomy

Indexed keywords

CERRADO; GENETIC MARKER; GEOGRAPHICAL DISTRIBUTION; HERB; MOLECULAR ANALYSIS; MORPHOLOGY; NEOTROPICAL REGION; PHYLOGENETICS; RECONSTRUCTION; SAVANNA; SHRUB; TAXONOMY;

AMAZONIA; BRAZIL; GUYANA SHIELD;

ACIOTIS; ACISANTHERA; COMOLIA; MARCETIA; MELASTOMATACEAE; SIPHANTHERA;

EID: 84977667901     PISSN: 00244074     EISSN: 10958339     Source Type: Journal    
DOI: 10.1111/boj.12429     Document Type: Review

References (84)

1. Alexander PJ, Rajanikanth G, Bacon CD, Bailey CD. 2007. Recovery of plant DNA using a reciprocating saw and silica-based columns. Molecular Ecology Notes 7: 5–9.
2. Almeda F, Martins AB. 2001. New combinations and new names in some Brazilian Microlicieae (Melastomataceae), with notes on the delimitation of Lavoisiera, Microlicia, and Trembleya. Novon 11: 1–7.
3. Almeda F, Robinson OR. 2011. Systematics and phylogeny of Siphanthera (Melastomataceae). Systematic Botany Monographs 93: 1–101.
4. Amorim AM, Goldenberg R, Michelangeli FA. 2009. A new species of Physeterostemon (Melastomataceae) from Bahia, Brazil, with notes on the phylogeny of the genus. Systematic Botany 34: 324–329.
5. Baumgratz JFA, Caddah MK, Chiavegatto B, Goldenberg R, Guimarães PJF, Koschnitzke C, Kriebel R, Lima LFG, Martins AB, Michelangeli FA, Reginato M, Rocha MJR, Rodrigues KF, Romero R, Rosa P, Silva-Gonçalves KC, Souza MLDR, Woodgyer E. 2015. Melastomataceae. In: Forzza, R. C. et al., eds. Lista de espécies da Flora do Brasil. Rio de Janeiro: Jardim Botânico do Rio de Janeiro, Available at http://floradobrasil.jbrj.gov.br/jabot/floradobrasil/FB161. (acessed 2 July 2015).
6. Bécquer-Granados ER. 2008. Taxonomía y filogenia del género Pachyanthus (Melastomataceae: Miconieae). Ciudad de La Haban: Universidad de la Habana.
7. Bentham G. 1840. Enumeration of plants collected by Mr. Schomburgk in British Guiana. Melastomaceae. Journal of Botany (Hooker) 2: 286–315.
8. Bentham G, Hooker JD. 1867. Melastomataceae. Genera Plantarum 1: 748.
9. Brade AC. 1938. Melastomataceae Novae II. Archivos do Instituto de Biologia Vegetal 4: 71–84.
10. Caetano AP. 2014. Contribuição da embriologia na sistemática e na elucidação da apomixia em Melastomataceae Juss. Campinas, SP: Universidade Estadual de Campinas.
11. Candolle APD. 1828. Mémoires sur la famille des Mélastomacées. Prodromus Systematis Naturalis Regny Vegetabilis 3: 99–102.
12. Clausing G, Renner SS. 2001. Molecular phylogenetics of Melastomataceae and Memecylaceae: implications for character evolution. American Journal of Botany 88: 486–498.
13. Cogniaux CA. 1883. Melastomataceae. Flora Brasiliensis 14: 5–205.
14. Cogniaux CA. 1885. Melastomataceae. Flora Brasiliensis 14: 1–510.
15. Cogniaux CA. 1891. Melastomaceae. Monographiae Phanerogamarum 7: 1–1256.
16. Cogniaux CA. 1909. Melastomataceae peruvianae. Botanische Jahrbücherfür Systematik. 42: 131–148.
17. Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772.
18. Erixon P, Svennblad B, Britton T, Oxelman B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52: 665–673.
19. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
20. Fitch WM. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20: 406–416.
21. Freire-Fierro A. 2002. Monograph of Aciotis (Melastomataceae). Systematic Botany Monographs 62: 1–129.
22. Fritsch PW, Almeda F, Renner SS, Martins AB, Cruz BC. 2004. Phylogeny and circumscription of the near-endemic Brazilian tribe Microlicieae (Melastomataceae). American Journal of Botany 91: 1105–1114.
23. Gleason HA. 1925. Studies on the flora of northern South America-VI. Bulletin of the Torrey Botanical Club 52: 325–340.
24. Gleason HA. 1934. The genus Macairea DC. in northern South America. Bulletin of the Torrey Botanical Club 61: 35–40.
25. Gleason HA. 1939a. The flora of Mount Auyan-Tepui, Venezuela. Brittonia 3: 141–204.
26. Gleason HA. 1939b. A new genus of Melastomataceae from Peru. Kew Bulletin 8: 480–481.
27. Gleason HA. 1952. Contributions to the flora of Venezuela: from Droseraceae through Umbelliferae/Julian A. Steyermark and collaborators. Fieldiana 28: 430–431.
28. Goldenberg R, Almeda F, Caddah MK, Martins AB, Meirelles J, Michelangeli FA, Weiss M. 2013. Nomenclator botanicus for the Neotropical genus Miconia (Melastomataceae: Miconieae). Phytotaxa 106(1): 1–171.
29. Goldenberg R, Fraga CN, Fontana AP, Nicolas NA, Michelangeli FA. 2012. Taxonomy and phylogeny of Merianthera (Melastomataceae). Taxon 61: 1040–1056.
30. Goldenberg R, Penneys DS, Almeda F, Judd WS, Michelangeli FA. 2008. Phylogeny of Miconia (Melastomataceae): patterns of stamen diversification in a megadiverse neotropical genus. International Journal of Plant Sciences 24: 315–327.
31. Guindon S, Gascuel O. 2003. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 52: 696–704.
32. Hamilton MB. 1999. Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Molecular Ecology 8: 521–523.
33. Ionta GM, Judd WS, Williams NH, Whitten WM. 2007. Phylogenetic relationships in Rhexia (Melastomataceae): evidence from DNA sequence data and morphology. International Journal of Plant Sciences 168: 1055–1066.
34. Krasser F. 1893. Melastomataceae. In: Engler A, Prantl K, eds. Die natiirlichen Pflanzenfamilien. Vol. 3. Leipzig: Verlag von Wilhelm Engelmann, 149.
35. Kress WJ, Prince LM, Williams KJ. 2002. The phylogeny and a new classification of the gingers (Zingiberaceae): evidence from molecular data. American Journal of Botany 89: 1682–1696.
36. Kriebel R. 2008. Systematics and biogeography of the Neotropical genus Acisanthera (Melastomataceae). San Francisco: San Francisco State University.
37. Kriebel R. 2012. A synopsis of the genus Poteranthera (Melastomeae: Melastomataceae) with the description of a new, apparently pollinator deceiving species. Brittonia 62: 6–14.
38. Kriebel R, Michelangeli FA, Kelly LM. 2015. Discovery of unusual anatomical and continuous characters in the evolutionary history of Conostegia (Miconieae: Melastomataceae). Molecular Phylogenetics and Evolution 82: 289–313.
39. Maddison WP, Maddison DR. 2001. MESQUITE: a modular system for evolutionary analysis, Version 2.75. Available at: http://mesquiteproject.org
40. Martin CV, Little DP, Goldenberg R, Michelangeli FA. 2008. A phylogenetic evaluation of Leandra (Miconieae, Melastomataceae): a polyphyletic genus where the seeds tell the story, not the petals. Cladistics 24: 315–327.
41. Martins AB. 1989. Revisão taxonômica do gênero Marcetia DC. (Melastomataceae). Tese (doutorado), Universidade Estadual de Campinas, Intituto de Biologia, 1–288.
42. Martius CFP. 1831. Novae genera et species plantarum 3. Munich: Caroli Wolf, 189.
43. Mendoza-Cifuentes H, Fernández-Alonso JL. 2012. Novedades em Centronia y Meriania (Merianieae, Melastomataceae) y revisión taxonômica de Meriania grupo brachycera. Anales del Jardín Botánico de Madrid 69: 259–294.
44. Michelangeli FA. 2000. A cladistic analysis of the genus Tococa (Melastomataceae) based on morphological data. Systematic Botany 25: 211–234.
45. Michelangeli FA, Guimaraes PJF, Penneys DS, Almeda F, Kriebel R. 2013. Phylogenetic relationships and distribution of New World Melastomeae (Melastomataceae). Botanical Journal of the Linnean Society 171: 38–60.
46. Michelangeli FA, Judd WS, Penneys DS, Skean JD, Bécquer-Granados ER, Goldenberg R, Martin CV. 2008. Multiple events of dispersal and radiation of the tribe Miconieae (Melastomataceae) in the Caribbean. Botanical Review 74: 53–77.
47. Michelangeli FA, Nicolas A, Morales-P MA, David H. 2011. Phylogenetic relationships of Allomaieta, Alloneuron, Cyphostyla, and Wurdastom (Melastomataceae) and the resurrection of the tribe Cyphostyleae. International Journal of Plant Sciences 172: 1165–1178.
48. Michelangeli FA, Penneys DS, Giza J, Soltis D, Hils MH, Skean JD. 2004. A preliminary phylogeny of the tribe Miconieae (Melastomataceae) based on nrITS sequence data and its implications on inflorescence position. Taxon 53: 279–290.
49. Michelangeli FA, Ulloa CA, Sosa K. 2014. Quipuanthus, a new genus of Melastomataceae from the foothills of the Andes in Ecuador and Peru. Systematic Botany 39: 533–540.
50. Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees in Proceedings of the Gateway Computing Environments Workshop (GCE) New Orleans, LA. pp 1–8. Available at: http://www.phylo.org/
51. Naudin CV. 1849–1853. Melastomacearum monographicae descriptiones. Annales des Sciences Naturelles; Botanique. Series III. Consolidated reprint, 1–719.
52. Nixon KC. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407–414.
53. Penneys DS, Judd WS. 2011. Phylogenetics and morphology in the Blakeeae (Melastomataceae). International Journal of Plant Sciences 172: 78–106.
54. Penneys DS, Judd WS. 2013. Combined molecular and morphological phylogenetic analyses of the Blakeeae (Melastomataceae). International Journal of Plant Sciences 174: 802–817.
55. Penneys DS, Michelangeli FA, Judd WS, Almeda F. 2010. Henrietteeae (Melastomataceae): a new Neotropical berry-fruited tribe. Systematic Botany 35: 783–800.
56. Pereira E. 1959. Contribuição ao conhecimento das Melastomataceae brasileiras. Arquivos Jardim Botânico Rio Janeiro 17: 125–160.
57. Presl CB. 1832. Descriptiones et icones plantarum novarum aut minus cognitarum. Symbolae Botanicae 1: 75.
58. Reginato M, Michelangeli FA, Goldenberg R. 2010. Phylogeny of Pleiochiton (Melastomataceae, Miconieae): total evidence. Botanical Journal of the Linnean Society 162: 423–434.
59. Renner SS. 1987. Sandemania hoehnei (Melastomataceae: Tibouchineae): taxonomy, distribution, and biology. Brittonia 39: 441–446.
60. Renner SS. 1989. Systematic studies in the Melastomataceae Bellucia, Loreya and Macairea. Memoirs of the New York Botanical Garden 50: 1–112.
61. Renner SS. 1993. Phylogeny and classification of the Melastomataceae and Memecylaceae. Nordic Journal of Botany 13: 519–540.
62. Santos AK. 2009. Estudos filogenéticos e biossistemáticos no gênero Marcetia DC. (Melastomataceae). Feira de Santana: Universidade Estadual de Feira de Santana.
63. Seco RS. 2006. Estudos taxonômicos no gênero Comolia DC (Melastomataceae-Melastomeae) no Brasil. Campinas: Universidade Estadual de Campinas.
64. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92: 142–166.
65. Simmons MP. 2004. Independence of alignment and tree search. Molecular Phylogenetics and Evolution 31: 874–879.
66. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690.
67. Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758–771.
68. Stone RD. 2006. Phylogeny of major lineages in Melastomataceae, subfamily Olisbeoideae: utility of nuclear glyceraldehyde 3-phosphate dehydrogenase (GapC) gene sequences. Systematic Botany 31: 107–121.
69. Stone RD, Andreasen K. 2010. The Afro-Madagascan genus Warneckea (Melastomataceae): molecular systematics and revised infrageneric classification. Taxon 59: 83–92.
70. Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland, MA: Sinauer Associates.
71. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729.
72. Thiers B. 2015. Index herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. Avaliable at: http://sweetgum.nybg.org/ih/. (accessed 6 June 2015).
73. Triana J. 1865. Dispositio Melastomacearum. Bulletin du Congres International de Botanique et d'Horticulture reuni à Amsterdam, 457–461.
74. Triana J. 1871. Les Melastomacées. Transactions of the Linnean Society of London 28: 1–188.
75. Ung V, Dubus G, Zaragüeta-Bagils R, Vignes-Lebbe R. 2010. Xper2: introducing e-taxonomy. Bioinformatics Applications Note 26: 703–704.
76. van Vliet G, Koek-Noorman J, Ter Welle BJH. 1981. Wood anatomy, classification and phylogeny of the Melastomataceae. Blumea 27: 463–473.
77. Whiffin T, Tomb AS. 1972. The systematic significance of seed morphology in the neotropical capsular-fruited Melastomataceae. American Journal of Botany 59: 411–422.
78. Wilson CL. 1950. Vasculation of the stamen in the Melastomaceae, with some phyletic implications. American Journal of Botany 37: 431–444.
79. Wurdack JJ. 1964. Melastomataceae. Botany of the Guayana Highlands-part V. Memoirs of the New York Botanical Garden, 10: 135–186.
80. Wurdack JJ. 1966. Certamen Melastomataceis X. Phytologia 13: 65.
81. Wurdack JJ. 1970. Certamen Melastomataceis XV. Phytologia 20: 369–389.
82. Wurdack JJ. 1973. Melastomataceae. In: Lasser T, (ed.). Flora de Venezuela, Vol. 8. Caracas: Instituto Botanico, 1–819.
83. Wurdack JJ. 1984. Certamen Melastomataceis XXXVII. Phytologia 55: 131–147.
84. Wurdack JJ, Renner SS, Morley T. 1993. Melastomataceae. In: Górts-Van Rijn ARA, ed. Flora of the Guianas Series A: phanerogams 13. Königstein: Koeltz Scientific Books, 83–84.