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Volumn 63, Issue 2, 2016, Pages 377-386

Type III CRISPR complexes from Thermus thermophilus

Author keywords

Chromatography; Cmr; CRISPR Cas; CrRNA; Csm; Endonuclease; Mass spectrometry (MS); Thermus thermophilus

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; ENDONUCLEASE;

EID: 84976877619     PISSN: 0001527X     EISSN: 1734154X     Source Type: Journal    
DOI: 10.18388/abp.2016_1261     Document Type: Article
Times cited : (1)

References (37)
  • 1
    • 73149087453 scopus 로고    scopus 로고
    • Transcription profile of Thermus thermophilus CRISPR systems after phage infection
    • Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A (2009) Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol 395: 270-281. doi: 10.1016/j. jmb.2009.10.057.
    • (2009) J Mol Biol , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5    Shinkai, A.6
  • 3
    • 84874195392 scopus 로고    scopus 로고
    • A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
    • Deng L, Garrett RA, Shah SA, Peng X, She Q (2013) A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol Microbiol 87: 1088-1099. doi: 10.1111/mmi.12152.
    • (2013) Mol Microbiol , vol.87 , pp. 1088-1099
    • Deng, L.1    Garrett, R.A.2    Shah, S.A.3    Peng, X.4    She, Q.5
  • 4
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas G, Barrangou R, Horvath P, Siksnys V (2012) Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 109: E2579-2586. doi: 10.1073/pnas.1208507109.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. E2579-2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 5
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I, Vergnaud G, Pourcel C (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172. doi: 10.1186/1471-2105-8-172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 6
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1: e60. doi: 10.1371/journal.pcbi.0010060.
    • (2005) PLoS Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 8
    • 0035850879 scopus 로고    scopus 로고
    • Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker
    • Hashimoto Y, Yano T, Kuramitsu S, Kagamiyama H (2001) Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker. FEBS Lett 506: 231-234. doi: 10.1016/S0014-5793(01)02926-X.
    • (2001) FEBS Lett , vol.506 , pp. 231-234
    • Hashimoto, Y.1    Yano, T.2    Kuramitsu, S.3    Kagamiyama, H.4
  • 9
    • 84855475577 scopus 로고    scopus 로고
    • Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site
    • Hatoum-Aslan A, Maniv I, Marraffini LA (2011) Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site. Proc Natl Acad Sci USA 108: 21218-21222. doi: 10.1073/pnas.1112832108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 21218-21222
    • Hatoum-Aslan, A.1    Maniv, I.2    Marraffini, L.A.3
  • 10
    • 84884765703 scopus 로고    scopus 로고
    • A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs
    • Hatoum-Aslan A, Samai P, Maniv I, Jiang W, Marraffini LA (2013) A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs. J Biol Chem 288: 27888-27897. doi: 10.1074/jbc. M113.499244.
    • (2013) J Biol Chem , vol.288 , pp. 27888-27897
    • Hatoum-Aslan, A.1    Samai, P.2    Maniv, I.3    Jiang, W.4    Marraffini, L.A.5
  • 11
    • 84890935599 scopus 로고    scopus 로고
    • Genetic characterization of antiplasmid immunity through a type IIIA CRISPR-Cas system
    • Hatoum-Aslan A, Maniv I, Samai P, Marraffini LA (2014) Genetic characterization of antiplasmid immunity through a type IIIA CRISPR-Cas system. J Bacteriol 196: 310-317. doi: 10.1128/JB.01130-13.
    • (2014) J Bacteriol , vol.196 , pp. 310-317
    • Hatoum-Aslan, A.1    Maniv, I.2    Samai, P.3    Marraffini, L.A.4
  • 13
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R, Embden JD, Gaastra W, Schouls LM (2002a) Identification of genes that are associated with DNA repeats in prokaryotes. Molecular microbiology 43: 1565-1575. doi: 10.1046/j.1365-2958.2002.02839.
    • (2002) Molecular microbiology , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 14
    • 0036408356 scopus 로고    scopus 로고
    • Identification of a novel family of sequence repeats among prokaryotes
    • Jansen R, van Embden JD, Gaastra W, Schouls LM (2002b) Identification of a novel family of sequence repeats among prokaryotes. OMICS 6: 23-33. doi: 10.1089/15362310252780816.
    • (2002) OMICS , vol.6 , pp. 23-33
    • Jansen, R.1    van Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 15
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816-821. doi: 10.1126/science. 1225829.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 17
    • 84863393352 scopus 로고    scopus 로고
    • A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs
    • Juranek S, Eban T, Altuvia Y, Brown M, Morozov P, Tuschl T, Margalit H (2012) A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs. RNA 18: 783-794. doi: 10.1261/rna.031468.111.
    • (2012) RNA , vol.18 , pp. 783-794
    • Juranek, S.1    Eban, T.2    Altuvia, Y.3    Brown, M.4    Morozov, P.5    Tuschl, T.6    Margalit, H.7
  • 18
    • 84879016248 scopus 로고    scopus 로고
    • crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus
    • Karvelis T, Gasiunas G, Miksys A, Barrangou R, Horvath P, Siksnys V (2013) crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus. RNA Biol 10: 841-851. doi: 10.4161/rna.24203.
    • (2013) RNA Biol , vol.10 , pp. 841-851
    • Karvelis, T.1    Gasiunas, G.2    Miksys, A.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 23
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322: 1843-1845. doi: 10.1126/science.1165771.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 24
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini LA, Sontheimer EJ (2010a) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 11: 181-190. doi: 10.1038/nrg2749.
    • (2010) Nat Rev Genet , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 25
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ (2010b) Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463: 568-571. doi: 10.1038/nature08703.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 26
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, Soria E (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60: 174-182. doi: 10.1007/s00239-004-0046-3
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 27
    • 0015955554 scopus 로고
    • Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa
    • Oshima T, Imahori K (1974) Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa. Int J Syst Bacteriol 24: 102-112. doi: 10.1099/00207713-24-1-102.
    • (1974) Int J Syst Bacteriol , vol.24 , pp. 102-112
    • Oshima, T.1    Imahori, K.2
  • 29
    • 84930085853 scopus 로고    scopus 로고
    • Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity
    • Samai P, Pyenson N, Jiang W, Goldberg GW, Hatoum-Aslan A, Marraffini LA (2015) Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity. Cell 161: 1164-1174. doi: 10.1016/j.cell.2015.04.027.
    • (2015) Cell , vol.161 , pp. 1164-1174
    • Samai, P.1    Pyenson, N.2    Jiang, W.3    Goldberg, G.W.4    Hatoum-Aslan, A.5    Marraffini, L.A.6
  • 30
  • 34
    • 84902533278 scopus 로고    scopus 로고
    • Unravelling the structural and mechanistic basis of CRISPR-Cas systems
    • van der Oost J, Westra ER, Jackson RN, Wiedenheft B (2014) Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat Rev Microbiol 12: 479-492. doi: 10.1038/nrmicro3279.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 479-492
    • van der Oost, J.1    Westra, E.R.2    Jackson, R.N.3    Wiedenheft, B.4
  • 36
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B, Sternberg SH, Doudna JA (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482: 331-338. doi: 10.1038/nature10886.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 37
    • 84908445494 scopus 로고    scopus 로고
    • Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli
    • Zhao H, Sheng G, Wang J, Wang M, Bunkoczi G, Gong W, Wei Z, Wang Y (2014) Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli. Nature 515: 147-150. doi: 10.1038/nature13733.
    • (2014) Nature , vol.515 , pp. 147-150
    • Zhao, H.1    Sheng, G.2    Wang, J.3    Wang, M.4    Bunkoczi, G.5    Gong, W.6    Wei, Z.7    Wang, Y.8


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