-
2
-
-
79955544013
-
Planarian stem cells: A simple paradigm for regeneration
-
Aboobaker, A.A. (2011) Planarian stem cells: a simple paradigm for regeneration. Trends Cell Biol., 21, 304-311.
-
(2011)
Trends Cell Biol.
, vol.21
, pp. 304-311
-
-
Aboobaker, A.A.1
-
3
-
-
78650873849
-
The planarian flatworm: An in vivo model for stem cell biology and nervous system regeneration
-
Gentile, L., Cebrià, F. and Bartscherer, K. (2011) The planarian flatworm: an in vivo model for stem cell biology and nervous system regeneration. Dis. Model Mech., 4, 12-19.
-
(2011)
Dis. Model Mech.
, vol.4
, pp. 12-19
-
-
Gentile, L.1
Cebrià, F.2
Bartscherer, K.3
-
4
-
-
84872946712
-
Stem cell systems and regeneration in planaria
-
Rink, J.C. (2013) Stem cell systems and regeneration in planaria. Dev. Genes Evol., 223, 67-84.
-
(2013)
Dev. Genes Evol.
, vol.223
, pp. 67-84
-
-
Rink, J.C.1
-
6
-
-
84859130304
-
Planarian regeneration: A classic topic claiming new attention
-
Saló, E. and Agata, K. (2012) Planarian regeneration: a classic topic claiming new attention. Int. J. Dev. Biol., 56, 3-4.
-
(2012)
Int. J. Dev. Biol.
, vol.56
, pp. 3-4
-
-
Saló, E.1
Agata, K.2
-
7
-
-
68549140377
-
Germ cell specification and regeneration in planarians
-
Newmark, P.A., Wang, Y. and Chong, T. (2008) Germ cell specification and regeneration in planarians. Cold Spring Harb. Symp. Quant. Biol., 73, 573-581.
-
(2008)
Cold Spring Harb. Symp. Quant. Biol.
, vol.73
, pp. 573-581
-
-
Newmark, P.A.1
Wang, Y.2
Chong, T.3
-
8
-
-
84863260340
-
Telomere maintenance and telomerase activity are differentially regulated in asexual and sexual worms
-
Tan, T.C.J., Rahman, R., Jaber-Hijazi, F., Felix, D.A., Chen, C., Louis, E.J. and Aboobaker, A. (2012) Telomere maintenance and telomerase activity are differentially regulated in asexual and sexual worms. Proc. Natl. Acad. Sci. U.S.A., 109, 4209-4214.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 4209-4214
-
-
Tan, T.C.J.1
Rahman, R.2
Jaber-Hijazi, F.3
Felix, D.A.4
Chen, C.5
Louis, E.J.6
Aboobaker, A.7
-
9
-
-
0037310238
-
Allometric scaling and proportion regulation in the freshwater planarian schmidtea mediterranea
-
Oviedo, N.J., Newmark, P.A. and Sánchez Alvarado, A. (2003) Allometric scaling and proportion regulation in the freshwater planarian Schmidtea mediterranea. Dev. Dyn., 226, 326-333.
-
(2003)
Dev. Dyn.
, vol.226
, pp. 326-333
-
-
Oviedo, N.J.1
Newmark, P.A.2
Sánchez Alvarado, A.3
-
10
-
-
84881481616
-
Reactivating head regrowth in a regeneration-deficient planarian species
-
Liu, S.-Y., Selck, C., Friedrich, B., Lutz, R., Vila-Farré, M., Dahl, A., Brandl, H., Lakshmanaperumal, N., Henry, I. and Rink, J.C. (2013) Reactivating head regrowth in a regeneration-deficient planarian species. Nature, 500, 81-84.
-
(2013)
Nature
, vol.500
, pp. 81-84
-
-
Liu, S.-Y.1
Selck, C.2
Friedrich, B.3
Lutz, R.4
Vila-Farré, M.5
Dahl, A.6
Brandl, H.7
Lakshmanaperumal, N.8
Henry, I.9
Rink, J.C.10
-
11
-
-
84881481476
-
Restoration of anterior regeneration in a planarian with limited regenerative ability
-
Sikes, J.M. and Newmark, P.A. (2013) Restoration of anterior regeneration in a planarian with limited regenerative ability. Nature, 500, 77-80.
-
(2013)
Nature
, vol.500
, pp. 77-80
-
-
Sikes, J.M.1
Newmark, P.A.2
-
12
-
-
84881481504
-
The molecular logic for planarian regeneration along the anterior-posterior axis
-
Umesono, Y., Tasaki, J., Nishimura, Y., Hrouda, M., Kawaguchi, E., Yazawa, S., Nishimura, O., Hosoda, K., Inoue, T. and Agata, K. (2013) The molecular logic for planarian regeneration along the anterior-posterior axis. Nature, 500, 73-76.
-
(2013)
Nature
, vol.500
, pp. 73-76
-
-
Umesono, Y.1
Tasaki, J.2
Nishimura, Y.3
Hrouda, M.4
Kawaguchi, E.5
Yazawa, S.6
Nishimura, O.7
Hosoda, K.8
Inoue, T.9
Agata, K.10
-
13
-
-
33846817337
-
Free-living flatworms under the knife: Past and present
-
Egger, B., Gschwentner, R. and Rieger, R. (2007) Free-living flatworms under the knife: past and present. Dev. Genes Evol., 217, 89-104.
-
(2007)
Dev. Genes Evol.
, vol.217
, pp. 89-104
-
-
Egger, B.1
Gschwentner, R.2
Rieger, R.3
-
14
-
-
0021060396
-
Energy partitioning in semelparous and iteroparous triclads
-
Woollhead, A.S. (1983) Energy partitioning in semelparous and iteroparous triclads. J. Anim. Ecol., 52, 603-620.
-
(1983)
J. Anim. Ecol.
, vol.52
, pp. 603-620
-
-
Woollhead, A.S.1
-
15
-
-
0000668992
-
The relationship between ration, reproductive effort and age-specific mortality in the evolution of life-history strategies-some observations on freshwater triclads
-
Calow, P. and Woollhead, A.S. (1977) The relationship between ration, reproductive effort and age-specific mortality in the evolution of life-history strategies-some observations on freshwater triclads. J. Anim. Ecol., 46, 765-781.
-
(1977)
J. Anim. Ecol.
, vol.46
, pp. 765-781
-
-
Calow, P.1
Woollhead, A.S.2
-
16
-
-
79960628617
-
Lack of metabolic ageing in the long-lived flatworm schmidtea polychroa
-
Mouton, S., Willems, M., Houthoofd, W., Bert, W. and Braeckman, B.P. (2011) Lack of metabolic ageing in the long-lived flatworm Schmidtea polychroa. Exp. Gerontol., 46, 755-761.
-
(2011)
Exp. Gerontol.
, vol.46
, pp. 755-761
-
-
Mouton, S.1
Willems, M.2
Houthoofd, W.3
Bert, W.4
Braeckman, B.P.5
-
17
-
-
84859121174
-
Intraspecific variation in cell turnover and regenerative rate in the freshwater planarian dendrocoelum lacteum
-
Romero, R., Baguñã, J. and Calow, P. (1991) Intraspecific variation in cell turnover and regenerative rate in the freshwater planarian Dendrocoelum lacteum. Invert. Reprod. Dev., 20, 107-113.
-
(1991)
Invert. Reprod. Dev.
, vol.20
, pp. 107-113
-
-
Romero, R.1
Baguñã, J.2
Calow, P.3
-
18
-
-
38549143656
-
SmedGD: The schmidtea mediterranea genome database
-
Robb, S.M.C., Ross, E. and Sánchez Alvarado, A. (2008) SmedGD: The Schmidtea mediterranea genome database. Nucleic Acids Res., 36, D599-D606.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D599-D606
-
-
Robb, S.M.C.1
Ross, E.2
Sánchez Alvarado, A.3
-
19
-
-
84939469691
-
SmedGD 2.0: The schmidtea mediterranea genome database
-
Robb, S.M.C., Gotting, K., Ross, E. and Sánchez Alvarado, A. (2015) SmedGD 2.0: The Schmidtea mediterranea genome database. Genesis, 53, 535-546.
-
(2015)
Genesis
, vol.53
, pp. 535-546
-
-
Robb, S.M.C.1
Gotting, K.2
Ross, E.3
Sánchez Alvarado, A.4
-
20
-
-
84870461332
-
InterMine: A flexible data warehouse system for the integration and analysis of heterogeneous biological data
-
Smith, R.N., Aleksic, J., Butano, D., Carr, A., Contrino, S., Hu, F., Lyne, M., Lyne, R., Kalderimis, A., Rutherford, K. et al. (2012) InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics, 28, 3163-3165.
-
(2012)
Bioinformatics
, vol.28
, pp. 3163-3165
-
-
Smith, R.N.1
Aleksic, J.2
Butano, D.3
Carr, A.4
Contrino, S.5
Hu, F.6
Lyne, M.7
Lyne, R.8
Kalderimis, A.9
Rutherford, K.10
-
21
-
-
80051634344
-
The head-regeneration transcriptome of the planarian schmidtea mediterranea
-
Sandmann, T., Vogg, M.C., Owlarn, S., Boutros, M. and Bartscherer, K. (2011) The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biol., 12, R76.
-
(2011)
Genome Biol.
, vol.12
, pp. R76
-
-
Sandmann, T.1
Vogg, M.C.2
Owlarn, S.3
Boutros, M.4
Bartscherer, K.5
-
22
-
-
79959875909
-
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics
-
Adamidi, C., Wang, Y., Gruen, D., Mastrobuoni, G., You, X., Tolle, D., Dodt, M., Mackowiak, S.D., Gogol-Doering, A., Oenal, P. et al. (2011) De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res., 21, 1193-1200.
-
(2011)
Genome Res.
, vol.21
, pp. 1193-1200
-
-
Adamidi, C.1
Wang, Y.2
Gruen, D.3
Mastrobuoni, G.4
You, X.5
Tolle, D.6
Dodt, M.7
Mackowiak, S.D.8
Gogol-Doering, A.9
Oenal, P.10
-
23
-
-
84887563919
-
The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios
-
Kao, D., Felix, D. and Aboobaker, A. (2013) The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios. BMC Genomics, 14, 797-814.
-
(2013)
BMC Genomics
, vol.14
, pp. 797-814
-
-
Kao, D.1
Felix, D.2
Aboobaker, A.3
-
24
-
-
84864376995
-
A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals
-
Labbé, R.M., Irimia, M., Currie, K.W., Lin, A., Zhu, S.J., Brown, D.D.R., Ross, E.J., Voisin, V., Bader, G.D., Blencowe, B.J. et al. (2012) A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals. Stem Cells, 30, 1734-1745.
-
(2012)
Stem Cells
, vol.30
, pp. 1734-1745
-
-
Labbé, R.M.1
Irimia, M.2
Currie, K.W.3
Lin, A.4
Zhu, S.J.5
Brown, D.D.R.6
Ross, E.J.7
Voisin, V.8
Bader, G.D.9
Blencowe, B.J.10
-
25
-
-
84857320620
-
PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells
-
Rouhana, L., Vieira, A.P., Roberts-Galbraith, R.H. and Newmark, P.A. (2012) PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells. Development, 139, 1083-1094.
-
(2012)
Development
, vol.139
, pp. 1083-1094
-
-
Rouhana, L.1
Vieira, A.P.2
Roberts-Galbraith, R.H.3
Newmark, P.A.4
-
26
-
-
84901240766
-
Whole-body acoel regeneration is controlled by wnt and bmp-admp signaling
-
Srivastava, M., Mazza-Curll, K.L., van Wolfswinkel, J.C. and Reddien, P.W. (2014) Whole-body acoel regeneration is controlled by Wnt and Bmp-Admp signaling. Curr. Biol., 24, 1107-1113.
-
(2014)
Curr. Biol.
, vol.24
, pp. 1107-1113
-
-
Srivastava, M.1
Mazza-Curll, K.L.2
Van Wolfswinkel, J.C.3
Reddien, P.W.4
-
27
-
-
84914094073
-
Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in schmidtea mediterranea
-
Xiang, Y, Miller, D.E., Ross, E.J., Sanchez Alvarado, A. and Hawley, R.S. (2014) Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea. Proc. Natl. Acad. Sci. U.S.A., 111, E5159-E5168.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E5159-E5168
-
-
Xiang, Y.1
Miller, D.E.2
Ross, E.J.3
Sanchez Alvarado, A.4
Hawley, R.S.5
-
28
-
-
84891767394
-
RefSeq: An update on mammalian reference sequences
-
Pruitt, K.D., Brown, G.R., Hiatt, S.M., Thibaud-Nissen, F., Astashyn, A., Ermolaeva, O., Farrell, C.M., Hart, J., Landrum, M.J., McGarvey, K.M. et al. (2014) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res., 42, D756-D763.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D756-D763
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
Farrell, C.M.7
Hart, J.8
Landrum, M.J.9
McGarvey, K.M.10
-
29
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
30
-
-
84899518211
-
InterProScan 5: Genome-scale protein function classification
-
Jones, P., Binns, D., Chang, H.-Y., Fraser, M., Li, W., McAnulla, C., McWilliam, H., Maslen, J., Mitchell, A., Nuka, G. et al. (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics, 30, 1236-1240.
-
(2014)
Bioinformatics
, vol.30
, pp. 1236-1240
-
-
Jones, P.1
Binns, D.2
Chang, H.-Y.3
Fraser, M.4
Li, W.5
McAnulla, C.6
McWilliam, H.7
Maslen, J.8
Mitchell, A.9
Nuka, G.10
-
31
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P, Longden, I. and Bleasby, A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
32
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis
-
Haas, B.J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P.D., Bowden, J., Couger, M.B., Eccles, D., Li, B., Lieber, M. et al. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc, 8, 1494-1512.
-
(2013)
Nat Protoc
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
Grabherr, M.4
Blood, P.D.5
Bowden, J.6
Couger, M.B.7
Eccles, D.8
Li, B.9
Lieber, M.10
-
33
-
-
84946735654
-
Gene ontology consortium: Going forward
-
Gene Ontology Consortium. (2015) Gene Ontology Consortium: going forward. Nucleic Acids Res., 43, D1049-D1056.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1049-D1056
-
-
-
34
-
-
69749083447
-
JBrowse: A next-generation genome browser
-
Skinner, M.E., Uzilov, A.V., Stein, L.D., Mungall, C.J. and Holmes, I.H. (2009) JBrowse: a next-generation genome browser. Genome Res., 19, 1630-1638.
-
(2009)
Genome Res.
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
35
-
-
84899492844
-
Stem cell-dependent formation of a functional anterior regeneration pole in planarians requires zic and forkhead transcription factors
-
Vogg, M.C., Owlarn, S., Perez Rico, Y.A., Xie, J., Suzuki, Y., Gentile, L., Wu, W. and Bartscherer, K. (2014) Stem cell-dependent formation of a functional anterior regeneration pole in planarians requires Zic and Forkhead transcription factors. Dev. Biol, 390, 136-148.
-
(2014)
Dev. Biol
, vol.390
, pp. 136-148
-
-
Vogg, M.C.1
Owlarn, S.2
Perez Rico, Y.A.3
Xie, J.4
Suzuki, Y.5
Gentile, L.6
Wu, W.7
Bartscherer, K.8
-
36
-
-
84920915376
-
β-Catenin-dependent control of positional information along the AP body axis in planarians involves a teashirt family member
-
Reuter, H., März, M., Vogg, M.C, Eccles, D., Grífol-Boldú, L., Wehner, D., Owlarn, S., Adell, T., Weidinger, G. and Bartscherer, K. (2015) β-Catenin-dependent control of positional information along the AP body axis in planarians involves a teashirt family member. Cell Rep., 10, 253-265.
-
(2015)
Cell Rep.
, vol.10
, pp. 253-265
-
-
Reuter, H.1
März, M.2
Vogg, M.C.3
Eccles, D.4
Grífol-Boldú, L.5
Wehner, D.6
Owlarn, S.7
Adell, T.8
Weidinger, G.9
Bartscherer, K.10
-
37
-
-
84881602357
-
Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians
-
Currie, K.W. and Pearson, B.J. (2013) Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians. Development, 140, 3577-3588.
-
(2013)
Development
, vol.140
, pp. 3577-3588
-
-
Currie, K.W.1
Pearson, B.J.2
-
38
-
-
84909590292
-
Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment
-
van Wolfswinkel, J. C., Wagner, D.E. and Reddien, P.W. (2014) Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment. Cell Stem Cell, 15, 326-339.
-
(2014)
Cell Stem Cell
, vol.15
, pp. 326-339
-
-
Van Wolfswinkel, J.C.1
Wagner, D.E.2
Reddien, P.W.3
-
39
-
-
84937434095
-
A mex3 homolog is required for differentiation during planarian stem cell lineage development
-
Zhu, S.J., Hallows, S.E., Currie, K.W., Xu, C. and Pearson, B.J. (2015) A mex3 homolog is required for differentiation during planarian stem cell lineage development. eLife, 4, doi:10.7554/eLife.07025.
-
(2015)
ELife
, vol.4
-
-
Zhu, S.J.1
Hallows, S.E.2
Currie, K.W.3
Xu, C.4
Pearson, B.J.5
-
40
-
-
84858724123
-
Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNAi and irradiation approach
-
Solana, J., Kao, D., Mihaylova, Y, Jaber-Hijazi, F., Malla, S., Wilson, R. and Aboobaker, A. (2012) Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNAi and irradiation approach. Genome Biol, 13, R19.
-
(2012)
Genome Biol
, vol.13
, pp. R19
-
-
Solana, J.1
Kao, D.2
Mihaylova, Y.3
Jaber-Hijazi, F.4
Malla, S.5
Wilson, R.6
Aboobaker, A.7
|