-
1
-
-
33644861212
-
ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
-
Montgomery, S.B., Griffith, O.L., Sleumer, M.C., Bergman, C.M., Bilenky, M., Pleasance, E.D., Prychyna, Y., Zhang, X. and Jones, S.J. (2006) ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics, 22, 637-640.
-
(2006)
Bioinformatics
, vol.22
, pp. 637-640
-
-
Montgomery, S.B.1
Griffith, O.L.2
Sleumer, M.C.3
Bergman, C.M.4
Bilenky, M.5
Pleasance, E.D.6
Prychyna, Y.7
Zhang, X.8
Jones, S.J.9
-
2
-
-
38549087902
-
ORegAnno: An open-access community-driven resource for regulatory annotation
-
Griffith, O.L., Montgomery, S.B., Bernier, B., Chu, B., Kasaian, K., Aerts, S., Mahony, S., Sleumer, M.C., Bilenky, M., Haeussler, M. et al. (2008) ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res., 36, D107-D113.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D107-D113
-
-
Griffith, O.L.1
Montgomery, S.B.2
Bernier, B.3
Chu, B.4
Kasaian, K.5
Aerts, S.6
Mahony, S.7
Sleumer, M.C.8
Bilenky, M.9
Haeussler, M.10
-
3
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
The Encode Project Consortium. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
4
-
-
84875847924
-
Is junk DNA bunk? A critique of ENCODE
-
Doolittle, W.F. (2013) Is junk DNA bunk? A critique of ENCODE. Proc. Natl. Acad. Sci. U.S.A., 110, 5294-5300.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 5294-5300
-
-
Doolittle, W.F.1
-
5
-
-
84876031068
-
The ENCODE project: Missteps overshadowing a success
-
Eddy, S.R. (2013) The ENCODE project: missteps overshadowing a success. Curr. Biol., 23, R259-261.
-
(2013)
Curr. Biol.
, vol.23
, pp. R259-R261
-
-
Eddy, S.R.1
-
6
-
-
84875275808
-
On the immortality of television sets: 'Function' in the human genome according to the evolution-free gospel of ENCODE
-
Graur, D., Zheng, Y., Price, N., Azevedo, R.B., Zufall, R.A. and Elhaik, E. (2013) On the immortality of television sets: 'function' in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol., 5, 578-590.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 578-590
-
-
Graur, D.1
Zheng, Y.2
Price, N.3
Azevedo, R.B.4
Zufall, R.A.5
Elhaik, E.6
-
7
-
-
49249110970
-
Global analysis of in vivo foxa2-binding sites in mouse adult liver using massively parallel sequencing
-
Wederell, E.D., Bilenky, M., Cullum, R., Thiessen, N., Dagpinar, M., Delaney, A., Varhol, R., Zhao, Y., Zeng, T., Bernier, B. et al. (2008) Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing. Nucleic Acids Res., 36, 4549-4564.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4549-4564
-
-
Wederell, E.D.1
Bilenky, M.2
Cullum, R.3
Thiessen, N.4
Dagpinar, M.5
Delaney, A.6
Varhol, R.7
Zhao, Y.8
Zeng, T.9
Bernier, B.10
-
8
-
-
77954339096
-
Babelomics: An integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
-
Medina, I., Carbonell, J., Pulido, L., Madeira, S.C., Goetz, S., Conesa, A., Tarraga, J., Pascual-Montano, A., Nogales-Cadenas, R., Santoyo, J. et al. (2010) Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res., 38, W210-W213.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W210-W213
-
-
Medina, I.1
Carbonell, J.2
Pulido, L.3
Madeira, S.C.4
Goetz, S.5
Conesa, A.6
Tarraga, J.7
Pascual-Montano, A.8
Nogales-Cadenas, R.9
Santoyo, J.10
-
9
-
-
62549085647
-
Caenorhabditis elegans cisRED: A catalogue of conserved genomic elements
-
Sleumer, M.C., Bilenky, M., He, A., Robertson, G., Thiessen, N. and Jones, S.J. (2009) Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements. Nucleic Acids Res., 37, 1323-1334.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1323-1334
-
-
Sleumer, M.C.1
Bilenky, M.2
He, A.3
Robertson, G.4
Thiessen, N.5
Jones, S.J.6
-
10
-
-
48449105268
-
ConTra: A promoter alignment analysis tool for identification of transcription factor binding sites across species
-
Hooghe, B., Hulpiau, P., van Roy, F. and De Bleser, P. (2008) ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species. Nucleic Acids Res., 36, W128-W132.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W128-W132
-
-
Hooghe, B.1
Hulpiau, P.2
Van Roy, F.3
De Bleser, P.4
-
11
-
-
84941053261
-
GRASP v2.0: An update on the genome-wide repository of associations between SNPs and phenotypes
-
Eicher, J.D., Landowski, C., Stackhouse, B., Sloan, A., Chen, W., Jensen, N., Lien, J.P., Leslie, R. and Johnson, A.D. (2015) GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes. Nucleic Acids Res., 43, D799-D804.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D799-D804
-
-
Eicher, J.D.1
Landowski, C.2
Stackhouse, B.3
Sloan, A.4
Chen, W.5
Jensen, N.6
Lien, J.P.7
Leslie, R.8
Johnson, A.D.9
-
12
-
-
84949287040
-
I-cisTarget 2015 update: Generalized cis-regulatory enrichment analysis in human, mouse and fly
-
Imrichova, H., Hulselmans, G., Atak, Z.K., Potier, D. and Aerts, S. (2015) i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly. Nucleic Acids Res., 43, W57-W64.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W57-W64
-
-
Imrichova, H.1
Hulselmans, G.2
Atak, Z.K.3
Potier, D.4
Aerts, S.5
-
13
-
-
84903527058
-
LASAGNA-search 2.0: Integrated transcription factor binding site search and visualization in a browser
-
Lee, C. and Huang, C.H. (2014) LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser. Bioinformatics, 30, 1923-1925.
-
(2014)
Bioinformatics
, vol.30
, pp. 1923-1925
-
-
Lee, C.1
Huang, C.H.2
-
14
-
-
84946100079
-
The UCSC genome browser database: 2015 update
-
Rosenbloom, K.R., Armstrong, J., Barber, G.P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T.R., Fujita, P.A., Guruvadoo, L., Haeussler, M. et al. (2015) The UCSC Genome Browser database: 2015 update. Nucleic Acids Res., 43, D670-D681.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D670-D681
-
-
Rosenbloom, K.R.1
Armstrong, J.2
Barber, G.P.3
Casper, J.4
Clawson, H.5
Diekhans, M.6
Dreszer, T.R.7
Fujita, P.A.8
Guruvadoo, L.9
Haeussler, M.10
-
15
-
-
84871430267
-
An integrative approach to inferring gene regulatory module networks
-
Baitaluk, M., Kozhenkov, S. and Ponomarenko, J. (2012) An integrative approach to inferring gene regulatory module networks. PLoS One, 7, e52836.
-
(2012)
PLoS One
, vol.7
-
-
Baitaluk, M.1
Kozhenkov, S.2
Ponomarenko, J.3
-
16
-
-
84899864278
-
RANK- and c-met-mediated signal network promotes prostate cancer metastatic colonization
-
Chu, G.C., Zhau, H.E., Wang, R., Rogatko, A., Feng, X., Zayzafoon, M., Liu, Y., Farach-Carson, M.C., You, S., Kim, J. et al. (2014) RANK- and c-Met-mediated signal network promotes prostate cancer metastatic colonization. Endocr. Relat. Cancer, 21, 311-326.
-
(2014)
Endocr. Relat. Cancer
, vol.21
, pp. 311-326
-
-
Chu, G.C.1
Zhau, H.E.2
Wang, R.3
Rogatko, A.4
Feng, X.5
Zayzafoon, M.6
Liu, Y.7
Farach-Carson, M.C.8
You, S.9
Kim, J.10
-
17
-
-
84872321385
-
SignaLink 2 - A signaling pathway resource with multi-layered regulatory networks
-
Fazekas, D., Koltai, M., Turei, D., Modos, D., Palfy, M., Dul, Z., Zsakai, L., Szalay-Beko, M., Lenti, K., Farkas, I.J. et al. (2013) SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. BMC Syst. Biol., 7, 7.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 7
-
-
Fazekas, D.1
Koltai, M.2
Turei, D.3
Modos, D.4
Palfy, M.5
Dul, Z.6
Zsakai, L.7
Szalay-Beko, M.8
Lenti, K.9
Farkas, I.J.10
-
18
-
-
78049437880
-
Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
-
Komurov, K., White, M.A. and Ram, P.T. (2010) Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Comput. Biol., 6, e1000889.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Komurov, K.1
White, M.A.2
Ram, P.T.3
-
19
-
-
84923379949
-
Autophagy regulatory network - A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy
-
Turei, D., Foldvari-Nagy, L., Fazekas, D., Modos, D., Kubisch, J., Kadlecsik, T., Demeter, A., Lenti, K., Csermely, P., Vellai, T. et al. (2015) Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy. Autophagy, 11, 155-165.
-
(2015)
Autophagy
, vol.11
, pp. 155-165
-
-
Turei, D.1
Foldvari-Nagy, L.2
Fazekas, D.3
Modos, D.4
Kubisch, J.5
Kadlecsik, T.6
Demeter, A.7
Lenti, K.8
Csermely, P.9
Vellai, T.10
-
20
-
-
79960572198
-
Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities
-
Bainbridge, M.N., Wang, M., Wu, Y., Newsham, I., Muzny, D.M., Jefferies, J.L., Albert, T.J., Burgess, D.L. and Gibbs, R.A. (2011) Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities. Genome Biol., 12, R68.
-
(2011)
Genome Biol.
, vol.12
, pp. R68
-
-
Bainbridge, M.N.1
Wang, M.2
Wu, Y.3
Newsham, I.4
Muzny, D.M.5
Jefferies, J.L.6
Albert, T.J.7
Burgess, D.L.8
Gibbs, R.A.9
-
21
-
-
84938630124
-
Genome modeling system: A knowledge management platform for genomics
-
Griffith, M., Griffith, O.L., Smith, S.M., Ramu, A., Callaway, M.B., Brummett, A.M., Kiwala, M.J., Coffman, A.C., Regier, A.A., Oberkfell, B.J. et al. (2015) Genome Modeling System: A Knowledge Management Platform for Genomics. PLoS Comput. Biol., 11, e1004274.
-
(2015)
PLoS Comput. Biol.
, vol.11
-
-
Griffith, M.1
Griffith, O.L.2
Smith, S.M.3
Ramu, A.4
Callaway, M.B.5
Brummett, A.M.6
Kiwala, M.J.7
Coffman, A.C.8
Regier, A.A.9
Oberkfell, B.J.10
-
22
-
-
84875757638
-
Punctuated evolution of prostate cancer genomes
-
Baca, S.C., Prandi, D., Lawrence, M.S., Mosquera, J.M., Romanel, A., Drier, Y., Park, K., Kitabayashi, N., MacDonald, T.Y., Ghandi, M. et al. (2013) Punctuated evolution of prostate cancer genomes. Cell, 153, 666-677.
-
(2013)
Cell
, vol.153
, pp. 666-677
-
-
Baca, S.C.1
Prandi, D.2
Lawrence, M.S.3
Mosquera, J.M.4
Romanel, A.5
Drier, Y.6
Park, K.7
Kitabayashi, N.8
MacDonald, T.Y.9
Ghandi, M.10
-
23
-
-
84883583576
-
GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications
-
Li, M.J., Wang, L.Y., Xia, Z., Sham, P.C. and Wang, J. (2013) GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications. Nucleic Acids Res., 41, W150-W158.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W150-W158
-
-
Li, M.J.1
Wang, L.Y.2
Xia, Z.3
Sham, P.C.4
Wang, J.5
-
24
-
-
80052158097
-
The mutational landscape of head and neck squamous cell carcinoma
-
Stransky, N., Egloff, A.M., Tward, A.D., Kostic, A.D., Cibulskis, K., Sivachenko, A., Kryukov, G.V., Lawrence, M.S., Sougnez, C., McKenna, A. et al. (2011) The mutational landscape of head and neck squamous cell carcinoma. Science, 333, 1157-1160.
-
(2011)
Science
, vol.333
, pp. 1157-1160
-
-
Stransky, N.1
Egloff, A.M.2
Tward, A.D.3
Kostic, A.D.4
Cibulskis, K.5
Sivachenko, A.6
Kryukov, G.V.7
Lawrence, M.S.8
Sougnez, C.9
McKenna, A.10
-
25
-
-
84861593449
-
A genome-wide association study identifies susceptibility loci for wilms tumor
-
Turnbull, C., Perdeaux, E.R., Pernet, D., Naranjo, A., Renwick, A., Seal, S., Munoz-Xicola, R.M., Hanks, S., Slade, I., Zachariou, A. et al. (2012) A genome-wide association study identifies susceptibility loci for Wilms tumor. Nat. Genet., 44, 681-684.
-
(2012)
Nat. Genet.
, vol.44
, pp. 681-684
-
-
Turnbull, C.1
Perdeaux, E.R.2
Pernet, D.3
Naranjo, A.4
Renwick, A.5
Seal, S.6
Munoz-Xicola, R.M.7
Hanks, S.8
Slade, I.9
Zachariou, A.10
-
26
-
-
84939123947
-
The ensembl regulatory build
-
Zerbino, D.R., Wilder, S.P., Johnson, N., Juettemann, T. and Flicek, P.R. (2015) The ensembl regulatory build. Genome Biol., 16, 56.
-
(2015)
Genome Biol.
, vol.16
, pp. 56
-
-
Zerbino, D.R.1
Wilder, S.P.2
Johnson, N.3
Juettemann, T.4
Flicek, P.R.5
-
27
-
-
0141815478
-
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
-
Kent, W.J., Baertsch, R., Hinrichs, A., Miller, W. and Haussler, D. (2003) Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. U.S.A., 100, 11484-11489.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
28
-
-
33846112470
-
VISTA enhancer browser - A database of tissue-specific human enhancers
-
Visel, A., Minovitsky, S., Dubchak, I. and Pennacchio, L.A. (2007) VISTA Enhancer Browser - a database of tissue-specific human enhancers. Nucleic Acids Res., 35, D88-D92.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D88-D92
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
29
-
-
33645769260
-
An improved map of conserved regulatory sites for saccharomyces cerevisiae
-
MacIsaac, K.D., Wang, T., Gordon, D.B., Gifford, D.K., Stormo, G.D. and Fraenkel, E. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics, 7, 113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
30
-
-
78651335916
-
REDfly v3.0: Toward a comprehensive database of transcriptional regulatory elements in drosophila
-
Gallo, S.M., Gerrard, D.T., Miner, D., Simich, M., Soye, B., Bergman, C.M. and Halfon, M.S. (2011) REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res., 39, D118-D123.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D118-D123
-
-
Gallo, S.M.1
Gerrard, D.T.2
Miner, D.3
Simich, M.4
Soye, B.5
Bergman, C.M.6
Halfon, M.S.7
-
31
-
-
17444402501
-
Drosophila DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, drosophila melanogaster
-
Bergman, C.M., Carlson, J.W. and Celniker, S.E. (2005) Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics, 21, 1747-1749.
-
(2005)
Bioinformatics
, vol.21
, pp. 1747-1749
-
-
Bergman, C.M.1
Carlson, J.W.2
Celniker, S.E.3
-
32
-
-
84891808382
-
JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles
-
Mathelier, A., Zhao, X., Zhang, A.W., Parcy, F., Worsley-Hunt, R., Arenillas, D.J., Buchman, S., Chen, C.Y., Chou, A., Ienasescu, H. et al. (2014) JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Res., 42, D142-D147.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D142-D147
-
-
Mathelier, A.1
Zhao, X.2
Zhang, A.W.3
Parcy, F.4
Worsley-Hunt, R.5
Arenillas, D.J.6
Buchman, S.7
Chen, C.Y.8
Chou, A.9
Ienasescu, H.10
-
33
-
-
58149179991
-
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences
-
Portales-Casamar, E., Arenillas, D., Lim, J., Swanson, M.I., Jiang, S., McCallum, A., Kirov, S. and Wasserman, W.W. (2009) The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences. Nucleic Acids Res., 37, D54-D60.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D54-D60
-
-
Portales-Casamar, E.1
Arenillas, D.2
Lim, J.3
Swanson, M.I.4
Jiang, S.5
McCallum, A.6
Kirov, S.7
Wasserman, W.W.8
-
34
-
-
84876543942
-
RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
-
Salgado, H., Peralta-Gil, M., Gama-Castro, S., Santos-Zavaleta, A., Muniz-Rascado, L., Garcia-Sotelo, J.S., Weiss, V., Solano-Lira, H., Martinez-Flores, I., Medina-Rivera, A. et al. (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res., 41, D203-D213.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D203-D213
-
-
Salgado, H.1
Peralta-Gil, M.2
Gama-Castro, S.3
Santos-Zavaleta, A.4
Muniz-Rascado, L.5
Garcia-Sotelo, J.S.6
Weiss, V.7
Solano-Lira, H.8
Martinez-Flores, I.9
Medina-Rivera, A.10
-
35
-
-
77955963884
-
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
-
Betel, D., Koppal, A., Agius, P., Sander, C. and Leslie, C. (2010) Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol., 11, R90.
-
(2010)
Genome Biol.
, vol.11
, pp. R90
-
-
Betel, D.1
Koppal, A.2
Agius, P.3
Sander, C.4
Leslie, C.5
-
36
-
-
84891796290
-
MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
-
Hsu, S.D., Tseng, Y.T., Shrestha, S., Lin, Y.L., Khaleel, A., Chou, C.H., Chu, C.F., Huang, H.Y., Lin, C.M., Ho, S.Y. et al. (2014) miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 42, D78-D85.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D78-D85
-
-
Hsu, S.D.1
Tseng, Y.T.2
Shrestha, S.3
Lin, Y.L.4
Khaleel, A.5
Chou, C.H.6
Chu, C.F.7
Huang, H.Y.8
Lin, C.M.9
Ho, S.Y.10
-
37
-
-
84887423584
-
The NFI-regulome database: A tool for annotation and analysis of control regions of genes regulated by nuclear factor I transcription factors
-
Gronostajski, R.M., Guaneri, J., Lee, D.H. and Gallo, S.M. (2011) The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors. J. Clin. Bioinforma, 1, 4.
-
(2011)
J. Clin. Bioinforma
, vol.1
, pp. 4
-
-
Gronostajski, R.M.1
Guaneri, J.2
Lee, D.H.3
Gallo, S.M.4
-
38
-
-
70350741353
-
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
-
Hufton, A.L., Mathia, S., Braun, H., Georgi, U., Lehrach, H., Vingron, M., Poustka, A.J. and Panopoulou, G. (2009) Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Res., 19, 2036-2051.
-
(2009)
Genome Res.
, vol.19
, pp. 2036-2051
-
-
Hufton, A.L.1
Mathia, S.2
Braun, H.3
Georgi, U.4
Lehrach, H.5
Vingron, M.6
Poustka, A.J.7
Panopoulou, G.8
-
39
-
-
34547838179
-
Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation
-
Lim, C.A., Yao, F., Wong, J.J., George, J., Xu, H., Chiu, K.P., Sung, W.K., Lipovich, L., Vega, V.B., Chen, J. et al. (2007) Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation. Mol. Cell, 27, 622-635.
-
(2007)
Mol. Cell
, vol.27
, pp. 622-635
-
-
Lim, C.A.1
Yao, F.2
Wong, J.J.3
George, J.4
Xu, H.5
Chiu, K.P.6
Sung, W.K.7
Lipovich, L.8
Vega, V.B.9
Chen, J.10
-
40
-
-
34347345081
-
Whole-genome cartography of estrogen receptor alpha binding sites
-
Lin, C.Y., Vega, V.B., Thomsen, J.S., Zhang, T., Kong, S.L., Xie, M., Chiu, K.P., Lipovich, L., Barnett, D.H., Stossi, F. et al. (2007) Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet., 3, e87.
-
(2007)
PLoS Genet.
, vol.3
, pp. e87
-
-
Lin, C.Y.1
Vega, V.B.2
Thomsen, J.S.3
Zhang, T.4
Kong, S.L.5
Xie, M.6
Chiu, K.P.7
Lipovich, L.8
Barnett, D.H.9
Stossi, F.10
-
41
-
-
38049007472
-
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver
-
Gao, H., Falt, S., Sandelin, A., Gustafsson, J.A. and Dahlman-Wright, K. (2008) Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver. Mol. Endocrinol., 22, 10-22.
-
(2008)
Mol. Endocrinol.
, vol.22
, pp. 10-22
-
-
Gao, H.1
Falt, S.2
Sandelin, A.3
Gustafsson, J.A.4
Dahlman-Wright, K.5
-
42
-
-
84874191269
-
TERT promoter mutations in familial and sporadic melanoma
-
Horn, S., Figl, A., Rachakonda, P.S., Fischer, C., Sucker, A., Gast, A., Kadel, S., Moll, I., Nagore, E., Hemminki, K. et al. (2013) TERT promoter mutations in familial and sporadic melanoma. Science, 339, 959-961.
-
(2013)
Science
, vol.339
, pp. 959-961
-
-
Horn, S.1
Figl, A.2
Rachakonda, P.S.3
Fischer, C.4
Sucker, A.5
Gast, A.6
Kadel, S.7
Moll, I.8
Nagore, E.9
Hemminki, K.10
-
43
-
-
84874189784
-
Highly recurrent TERT promoter mutations in human melanoma
-
Huang, F.W., Hodis, E., Xu, M.J., Kryukov, G.V., Chin, L. and Garraway, L.A. (2013) Highly recurrent TERT promoter mutations in human melanoma. Science, 339, 957-959.
-
(2013)
Science
, vol.339
, pp. 957-959
-
-
Huang, F.W.1
Hodis, E.2
Xu, M.J.3
Kryukov, G.V.4
Chin, L.5
Garraway, L.A.6
-
44
-
-
84876067164
-
TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal
-
Killela, P.J., Reitman, Z.J., Jiao, Y., Bettegowda, C., Agrawal, N., Diaz, L.A. Jr, Friedman, A.H., Friedman, H., Gallia, G.L., Giovanella, B.C. et al. (2013) TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal. Proc. Natl. Acad. Sci. U.S.A., 110, 6021-6026.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 6021-6026
-
-
Killela, P.J.1
Reitman, Z.J.2
Jiao, Y.3
Bettegowda, C.4
Agrawal, N.5
Diaz, L.A.6
Friedman, A.H.7
Friedman, H.8
Gallia, G.L.9
Giovanella, B.C.10
-
45
-
-
84884524540
-
Frequency of TERT promoter mutations in human cancers
-
Vinagre, J., Almeida, A., Populo, H., Batista, R., Lyra, J., Pinto, V., Coelho, R., Celestino, R., Prazeres, H., Lima, L. et al. (2013) Frequency of TERT promoter mutations in human cancers. Nat. Commun., 4, 2185.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2185
-
-
Vinagre, J.1
Almeida, A.2
Populo, H.3
Batista, R.4
Lyra, J.5
Pinto, V.6
Coelho, R.7
Celestino, R.8
Prazeres, H.9
Lima, L.10
-
46
-
-
0033568462
-
Telomere shortening and apoptosis in telomerase-inhibited human tumor cells
-
Zhang, X., Mar, V., Zhou, W., Harrington, L. and Robinson, M.O. (1999) Telomere shortening and apoptosis in telomerase-inhibited human tumor cells. Genes Dev., 13, 2388-2399.
-
(1999)
Genes Dev.
, vol.13
, pp. 2388-2399
-
-
Zhang, X.1
Mar, V.2
Zhou, W.3
Harrington, L.4
Robinson, M.O.5
-
47
-
-
84922527340
-
Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types
-
Fredriksson, N.J., Ny, L., Nilsson, J.A. and Larsson, E. (2014) Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. Nat. Genet., 46, 1258-1263.
-
(2014)
Nat. Genet.
, vol.46
, pp. 1258-1263
-
-
Fredriksson, N.J.1
Ny, L.2
Nilsson, J.A.3
Larsson, E.4
-
48
-
-
84933278181
-
Recurrent somatic mutations in regulatory regions of human cancer genomes
-
Melton, C., Reuter, J.A., Spacek, D.V. and Snyder, M. (2015) Recurrent somatic mutations in regulatory regions of human cancer genomes. Nat. Genet., 47, 710-716.
-
(2015)
Nat. Genet.
, vol.47
, pp. 710-716
-
-
Melton, C.1
Reuter, J.A.2
Spacek, D.V.3
Snyder, M.4
-
49
-
-
84908894973
-
Genome-wide analysis of noncoding regulatory mutations in cancer
-
Weinhold, N., Jacobsen, A., Schultz, N., Sander, C. and Lee, W. (2014) Genome-wide analysis of noncoding regulatory mutations in cancer. Nat. Genet., 46, 1160-1165.
-
(2014)
Nat. Genet.
, vol.46
, pp. 1160-1165
-
-
Weinhold, N.1
Jacobsen, A.2
Schultz, N.3
Sander, C.4
Lee, W.5
-
50
-
-
84885639776
-
Integrative annotation of variants from 1092 humans: Application to cancer genomics
-
Khurana, E., Fu, Y., Colonna, V., Mu, X.J., Kang, H.M., Lappalainen, T., Sboner, A., Lochovsky, L., Chen, J., Harmanci, A. et al. (2013) Integrative annotation of variants from 1092 humans: application to cancer genomics. Science, 342, 1235587.
-
(2013)
Science
, vol.342
-
-
Khurana, E.1
Fu, Y.2
Colonna, V.3
Mu, X.J.4
Kang, H.M.5
Lappalainen, T.6
Sboner, A.7
Lochovsky, L.8
Chen, J.9
Harmanci, A.10
-
51
-
-
84875634162
-
Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdottir, H., Robinson, J.T. and Mesirov, J.P. (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform., 14, 178-192.
-
(2013)
Brief Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
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