Genetic analysis of H3N2 avian influenza viruses isolated from live poultry markets and poultry slaughterhouses in Shanghai, China in 2013

Virus Genes

Volumn 51, Issue 1, 2015, Pages 25-32

  Yang, Dequan ^a   Liu, Jian ^a   Ju, Houbin ^a   Ge, Feifei ^a   Wang, Jian ^a   Li, Xin ^a   Zhou, Jinping ^a   Liu, Peihong ^a  

^a Shanghai Animal Disease Control Center   (China)

Author keywords

Evolution; H3N2; Low pathogenic avian influenza virus; Phylogenetics; Reassortment

Indexed keywords

HEMAGGLUTININ; VIRUS RNA;

ANAS PLATYRHYNCHOS; ARTICLE; AVIAN INFLUENZA; BIRD; CHINA; CONTROLLED STUDY; GENE CLUSTER; GENE SEQUENCE; GENETIC ANALYSIS; INFLUENZA VIRUS A H3N2; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PIGEON; POULTRY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SLAUGHTERHOUSE; VIRUS GENE; VIRUS ISOLATION; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC REASSORTMENT; GENETIC VARIATION; GENETICS; INFLUENZA A VIRUS (H3N2); MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

ANAS PLATYRHYNCHOS; AVES; AVIAN INFLUENZA VIRUS; COLUMBA; ORTHOMYXOVIRIDAE;

ABATTOIRS; ANIMALS; CHINA; CLUSTER ANALYSIS; GENETIC VARIATION; GENOME, VIRAL; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA IN BIRDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POULTRY; REASSORTANT VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84938416618     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-015-1198-5     Document Type: Article

References (47)

1. R.A. Fouchier, V. Munster, A. Wallensten, T.M. Bestebroer, S. Herfst, D. Smith, G.F. Rimmelzwaan, B. Olsen, A.D. Osterhaus, J. Virol. 79(5), 2814–2822 (2005)
2. B. Olsen, V.J. Munster, A. Wallensten, J. Waldenström, A.D. Osterhaus, R.A. Fouchier, Science 312(5772), 384–388 (2006)
3. E.F. Kaleta, G. Hergarten, A. Yilmaz, Dtsch. Tierarztl. Wochenschr. 112(12), 448–456 (2005)
4. J. Pasick, H. Weingartl, A. Clavijo, J. Riva, H. Kehler, K. Handel, E. Watkins, K. Hills, Avian Dis. 47, 1208–1213 (2003)
5. W.J. Bean, M. Schell, J. Katz, Y. Kawaoka, C. Naeve, O. Gorman, R.G. Webster, J. Virol. 66(2), 1129–1138 (1992)
6. R.G. Webster, W.J. Bean, O.T. Gorman, T.M. Chambers, Y. Kawaoka, Microbiol. Rev. 56(1), 152–179 (1992)
7. L. Campitelli, C. Fabiani, S. Puzelli, A. Fioretti, E. Foni, A. De Marco, S. Krauss, R.G. Webster, I. Donatelli, J. Gen. Virol. 83, 413–420 (2002)
8. M.S. Song, T.K. Oh, H.J. Moon, D.W. Yoo, E.H. Lee, J.S. Lee, C.J. Kim, G.J. Yoo, H. Kim, Y.K. Choi, J. Gen. Virol. 89, 949–957 (2008)
9. J. Pu, Q.F. Liu, Y.J. Xia, Y.L. Fan, E.G. Brown, F.L. Tian, J.H. Liu, Virus Genes 38(1), 136–142 (2009)
10. H. Zhou, A. Zhang, H. Chen, M. Jin, Arch. Virol. 156(6), 1045–1048 (2011)
11. Y. Kawaoka, S. Krauss, R.G. Webster, J. Virol. 63(11), 4603–4608 (1989)
12. E.L. Stephen, J.C. Nancy, K. Alexander, Int. Congr. 1263, 184–190 (2004)
13. O.T. Gorman, W.J. Bean, Y. Kawaoka, I. Donatelli, Y. Guo, R.G. Webster, J. Virol. 65(7), 3704–3714 (1991)
14. U. Schultz, W.M. Fitch, S. Ludwig, J. Mandler, C. Scholtissek, Virology 183(1), 61–73 (1991)
15. M.R. Castrucci, I. Donatelli, L. Sidoli, G. Barigazzi, Y. Kawaoka, R.G. Webster, Virology 193(1), 503–506 (1993)
16. E.C. Claas, Y. Kawaoka, J.C. de Jong, N. Masurel, R.G. Webster, Virology 204(1): 453-457
17. S. Li, Z. Shi, P. Jiao, G. Zhang, Z. Zhong, W. Tian, L.P. Long, Z. Cai, X. Zhu, M. Liao, X.F. Wan, Infect Genet Evol 10(8), 1286–1288 (2010)
18. D. Song, B. Kang, C. Lee, K. Jung, G. Ha, D. Kang, S. Park, B. Park, J. Oh, Emerg. Infect. Dis. 14(5), 741–746 (2008)
19. D. Song, C. Lee, B. Kang, K. Jung, T. Oh, H. Kim, B. Park, J. Oh, Emerg. Infect. Dis. 15(1), 56–58 (2009)
20. K.F. Shortridge, Semin. Respir. Infect. 7(1), 11–25 (1992)
21. M. Liu, S. He, D. Walker, N. Zhou, D.R. Perez, B. Mo, F. Li, X. Huang, R.G. Webster, R.J. Webby, Virology 305(2), 267–275 (2003)
22. B.F. Qiu, W.J. Liu, D.X. Peng, S.L. Hu, Y.H. Tang, X.F. Liu, J. Virol. Methods 155(2), 193–198 (2009)
23. J.E. Dent, R.R. Kao, I.Z. Kiss, K. Hyder, M. Arnold, BMC Vet Res 4, 27 (2008)
24. J.E. Dent, I.Z. Kiss, R.R. Kao, M. Arnold, BMC Vet Res 7, 59 (2011)
25. L.P. Phipps, S.C. Essen, I.H. Brown, J. Virol. Methods 122(1), 119–122 (2004)
26. E. Hoffmann, J. Stech, Y. Guan, R.G. Webster, D.R. Perez, Arch. Virol. 146(12), 2275–2289 (2001)
27. K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24(8), 1596–1599 (2007)
28. D.A. Steinhauer, Virology 258(1), 1–20 (1999)
29. J. Liu, D.J. Stevens, L.F. Haire, P.A. Walker, P.J. Coombs, R.J. Russell, S.J. Gamblin, J.J. Skehel, Proc. Natl. Acad. Sci. 106(40), 17175–17180 (2009)
30. A. Helenius, M. Aebi, Annu. Rev. Biochem. 73, 1019–1049 (2004)
31. E.K. Subbarao, W. London, B.R. Murphy, J. Virol. 67(4), 1761–1764 (1993)
32. Z. Li, H. Chen, P. Jiao, G. Deng, G. Tian, Y. Li, E. Hoffmann, R.G. Webster, Y. Matsuoka, K. Yu, J. Virol. 79(18), 12058–12064 (2005)
33. R. Zell, A. Krumbholz, P. Wutzler, C. Campese, C. Pelaz, Emerg. Infect. Dis. 12(10), 1607–1608 (2006)
34. G.M. Conenello, D. Zamarin, L.A. Perrone, T. Tumpey, P. Palese, PLoS Pathog. 3(10), 1414–1421 (2007)
35. M. Okomo-Adhiambo, G.J. Demmler-Harrison, V.M. Deyde, T.G. Sheu, X. Xu, A.I. Klimov, L.V. Gubareva, Antimicrob. Agents Chemother. 54(5), 1834–1841 (2010)
36. J.L. McKimm-Breschkin, A. Sahasrabudhe, T.J. Blick, M. McDonald, P.M. Colman, G.J. Hart, R.C. Bethell, J.N. Varghese, J. Virol. 72(3), 2456–2462 (1998)
37. S. Fan, G. Deng, J. Song, G. Tian, Y. Suo, Y. Jiang, Y. Guan, Z. Bu, Y. Kawaoka, H. Chen, Virology 384(1), 28–32 (2009)
38. L.H. Pinto, L.J. Holsinger, R.A. Lamb, Cell 69(3), 517–528 (1992)
39. P. Jiao, G. Tian, Y. Li, G. Deng, Y. Jiang, C. Liu, W. Liu, Z. Bu, Y. Kawaoka, H. Chen, J. Virol. 82(3), 1146–1154 (2008)
40. S.H. Seo, E. Hoffmann, R.G. Webster, Virus Res. 103(122), 107–113 (2004)
41. J.C. Obenauer, J. Denson, P.K. Mehta, X. Su, S. Mukatira, D.B. Finkelstein, X. Xu, J. Wang, J. Ma, Y. Fan, K.M. Rakestraw, R.G. Webster, E. Hoffmann, S. Krauss, J. Zheng, Z. Zhang, C.W. Naeve, Science 311(5767), 1576–1580 (2006)
42. Q. Teng, T. Hu, X. Li, G. Li, Z. Li, J. Virol. 86(21), 11944 (2012)
43. G. Deng, D. Tan, J. Shi, P. Cui, Y. Jiang, L. Liu, G. Tian, Y. Kawaoka, C. Li, H. Chen, J. Virol. 87(17), 9452–9462 (2013)
44. Q. Li, Q. Zhao, M. Gu, J. Zhu, X. Gu, G. Zhao, Q. Liu, X. Wang, X. Liu, X. Liu, Genome Announc 1(2), e0022112 (2013)
45. H.M. Yassine, C.W. Lee, D.L. Suarez, Y.M. Saif, Vaccine 26(7), 966–977 (2008)
46. J.G. Choi, H.M. Kang, M.C. Kim, M.R. Paek, H.R. Kim, B.S. Kim, J.H. Kwon, J.H. Kim, Y.J. Lee, Vet. Micro 155, 147–157 (2012)
47. A. Kreibich, O. Stech, J. Hundt, M. Ziller, T.C. Mettenleiter, J. Stech, PLoS ONE 8(11), e79165 (2013)