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Volumn 20, Issue 6, 2016, Pages 334-342

Epigenomics of Total Acute Sleep Deprivation in Relation to Genome-Wide DNA Methylation Profiles and RNA Expression

Author keywords

[No Author keywords available]

Indexed keywords

DNA; NOTCH RECEPTOR; RNA; WNT PROTEIN;

EID: 84975504190     PISSN: 15362310     EISSN: 15578100     Source Type: Journal    
DOI: 10.1089/omi.2016.0041     Document Type: Article
Times cited : (48)

References (40)
  • 1
    • 84879959760 scopus 로고    scopus 로고
    • Effect of sleep deprivation on rhythms of clock gene expression and melatonin in humans
    • Ackermann K, Plomp R, Lao O, et al. (2013). Effect of sleep deprivation on rhythms of clock gene expression and melatonin in humans. Chronobiol Int 30, 901-909.
    • (2013) Chronobiol Int , vol.30 , pp. 901-909
    • Ackermann, K.1    Plomp, R.2    Lao, O.3
  • 2
    • 0033617522 scopus 로고    scopus 로고
    • Notch signaling: Cell fate control and signal integration in development
    • Artavanis-Tsakonas S, Rand MD, and Lake RJ. (1999). Notch signaling: Cell fate control and signal integration in development. Science 284, 770-776.
    • (1999) Science , vol.284 , pp. 770-776
    • Artavanis-Tsakonas, S.1    Rand, M.D.2    Lake, R.J.3
  • 3
    • 34548493708 scopus 로고    scopus 로고
    • Behavioral and physiological consequences of sleep restriction
    • Banks S, and Dinges DF. (2007). Behavioral and physiological consequences of sleep restriction. J Clin Sleep Med 3, 519-528.
    • (2007) J Clin Sleep Med , vol.3 , pp. 519-528
    • Banks, S.1    Dinges, D.F.2
  • 4
    • 84891793558 scopus 로고    scopus 로고
    • Acute sleep deprivation increases serum levels of neuron-specific enolase (NSE) and S100 calcium binding protein B (S-100B) in healthy young men
    • Benedict C, Cedernaes J, Giedraitis V, et al. (2014). Acute sleep deprivation increases serum levels of neuron-specific enolase (NSE) and S100 calcium binding protein B (S-100B) in healthy young men. Sleep 37, 195-198.
    • (2014) Sleep , vol.37 , pp. 195-198
    • Benedict, C.1    Cedernaes, J.2    Giedraitis, V.3
  • 5
    • 84917740537 scopus 로고    scopus 로고
    • Stratified randomization controls better for batch effects in 450K methylation analysis: A cautionary tale
    • Buhule OD, Minster RL, Hawley NL, et al. (2014). Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale. Front Genet 5, 354.
    • (2014) Front Genet , vol.5 , pp. 354
    • Buhule, O.D.1    Minster, R.L.2    Hawley, N.L.3
  • 6
    • 84941703109 scopus 로고    scopus 로고
    • Acute sleep loss induces tissue-specific epigenetic and transcriptional alterations to Circadian clock genes in men
    • Cedernaes J, Osler ME, Voisin S, et al. (2015). Acute sleep loss induces tissue-specific epigenetic and transcriptional alterations to Circadian clock genes in men. J Clin Endocrinol Metab 100, E1255-61.
    • (2015) J Clin Endocrinol Metab , vol.100 , pp. E1255-E1261
    • Cedernaes, J.1    Osler, M.E.2    Voisin, S.3
  • 7
    • 84924036254 scopus 로고    scopus 로고
    • Acute sleep deprivation in healthy young men: Impact on population diversity and function of circulating neutrophils
    • Christoffersson G, Vågesjö E, Pettersson US, et al. (2014). Acute sleep deprivation in healthy young men: Impact on population diversity and function of circulating neutrophils. Brain Behav Immun 41, 162-172.
    • (2014) Brain Behav Immun , vol.41 , pp. 162-172
    • Christoffersson, G.1    Vågesjö, E.2    Pettersson, U.S.3
  • 8
    • 2042546746 scopus 로고    scopus 로고
    • In search of a depressed mouse: Utility of models for studying depression-related behavior in genetically modified mice
    • Cryan JF, and Mombereau C. (2004). In search of a depressed mouse: utility of models for studying depression-related behavior in genetically modified mice. Mol Psychiatry 9, 326-357.
    • (2004) Mol Psychiatry , vol.9 , pp. 326-357
    • Cryan, J.F.1    Mombereau, C.2
  • 9
    • 33646145721 scopus 로고    scopus 로고
    • Circadian regulator CLOCK is a histone acetyltransferase
    • Doi M, Hirayama J, and Sassone-Corsi P. (2006). Circadian regulator CLOCK is a histone acetyltransferase. Cell 125, 497-508.
    • (2006) Cell , vol.125 , pp. 497-508
    • Doi, M.1    Hirayama, J.2    Sassone-Corsi, P.3
  • 10
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Betavalue and M-value methods for quantifying methylation levels by microarray analysis
    • Du P, Zhang X, Huang C-C, et al. (2010). Comparison of Betavalue and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics 11, 587.
    • (2010) BMC Bioinformatics , vol.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.-C.3
  • 11
    • 84877334314 scopus 로고    scopus 로고
    • Somnogenic effect of exogenous heat shock protein 70 kDa is mediated by GABA(A) receptors in the preoptic area of the hypothalamus
    • Ekimova IV. (2013). Somnogenic effect of exogenous heat shock protein 70 kDa is mediated by GABA(A) receptors in the preoptic area of the hypothalamus. Dokl Biol Sci 449, 89-92.
    • (2013) Dokl Biol Sci , vol.449 , pp. 89-92
    • Ekimova, I.V.1
  • 12
    • 38649126918 scopus 로고    scopus 로고
    • Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation
    • Fouse SD, Shen Y, Pellegrini M, et al. (2008). Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell 2, 160-169.
    • (2008) Cell Stem Cell , vol.2 , pp. 160-169
    • Fouse, S.D.1    Shen, Y.2    Pellegrini, M.3
  • 13
    • 80051667505 scopus 로고    scopus 로고
    • Possible association between ubiquitin-specific peptidase 46 gene and major depressive disorders in the Japanese population
    • Fukuo Y, Kishi T, Kushima I, et al. (2011). Possible association between ubiquitin-specific peptidase 46 gene and major depressive disorders in the Japanese population. J Affect Disord 133, 150-157.
    • (2011) J Affect Disord , vol.133 , pp. 150-157
    • Fukuo, Y.1    Kishi, T.2    Kushima, I.3
  • 14
    • 33745865489 scopus 로고    scopus 로고
    • Casein kinase 2 is activated and essential for Wnt/b-catenin signaling
    • Gao Y, and Wang H-Y. (2006). Casein kinase 2 is activated and essential for Wnt/b-catenin signaling. J Biol Chem 281, 18394-18400.
    • (2006) J Biol Chem , vol.281 , pp. 18394-18400
    • Gao, Y.1    Wang, H.-Y.2
  • 15
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman R, Carey V, Bates D, et al. (2004). Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5, R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.1    Carey, V.2    Bates, D.3
  • 16
    • 84866868744 scopus 로고    scopus 로고
    • Aging effects on DNA methylation modules in human brain and blood tissue
    • Horvath S, Zhang Y, Langfelder P, et al. (2012). Aging effects on DNA methylation modules in human brain and blood tissue. Genome Biol 13, R97.
    • (2012) Genome Biol , vol.13
    • Horvath, S.1    Zhang, Y.2    Langfelder, P.3
  • 17
    • 33748796064 scopus 로고    scopus 로고
    • SLeep deprivation and activation of morning levels of cellular and genomic markers of inflammation
    • Irwin MR, Wang M, Campomayor CO, Collado-Hidalgo A, and Cole S. (2006). SLeep deprivation and activation of morning levels of cellular and genomic markers of inflammation. Arch Intern Med 166, 1756-1762.
    • (2006) Arch Intern Med , vol.166 , pp. 1756-1762
    • Irwin, M.R.1    Wang, M.2    Campomayor, C.O.3    Collado-Hidalgo, A.4    Cole, S.5
  • 19
    • 84885608862 scopus 로고    scopus 로고
    • Physiologic corticosterone oscillations regulate murine hematopoietic stem/ progenitor cell proliferation and CXCL12 expression by bone marrow stromal progenitors
    • Kollet O, Vagima Y, D'uva G, et al. (2013). Physiologic corticosterone oscillations regulate murine hematopoietic stem/ progenitor cell proliferation and CXCL12 expression by bone marrow stromal progenitors. Leukemia 27, 2006-2015.
    • (2013) Leukemia , vol.27 , pp. 2006-2015
    • Kollet, O.1    Vagima, Y.2    D'Uva, G.3
  • 20
    • 84930706617 scopus 로고    scopus 로고
    • Effect of long-term sleep restriction and subsequent recovery sleep on the diurnal rhythms of white blood cell subpopulations
    • Lasselin J, Rehman J-U, Åkerstedt T, Lekander M, and Axelsson J. (2015). Effect of long-term sleep restriction and subsequent recovery sleep on the diurnal rhythms of white blood cell subpopulations. Brain Behav Immun 47, 93-99.
    • (2015) Brain Behav Immun , vol.47 , pp. 93-99
    • Lasselin, J.1    Rehman, J.-U.2    Åkerstedt, T.3    Lekander, M.4    Axelsson, J.5
  • 21
    • 75849128796 scopus 로고    scopus 로고
    • Essential roles of CKId and CKIe in the mammalian circadian clock
    • Lee H, Chen R, Lee Y, Yoo S, and Lee C. (2009). Essential roles of CKId and CKIe in the mammalian circadian clock. Proc Natl Acad Sci U S A 106, 21359-21364.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21359-21364
    • Lee, H.1    Chen, R.2    Lee, Y.3    Yoo, S.4    Lee, C.5
  • 22
    • 84893006492 scopus 로고    scopus 로고
    • Obesity and deranged sleep are independently associated with increased cancer mortality in 50 US states and the District of Columbia
    • Lehrer S, Green S, Ramanathan L, and Rosenzweig KE. (2013). Obesity and deranged sleep are independently associated with increased cancer mortality in 50 US states and the District of Columbia. Sleep Breath 17, 1117-1118.
    • (2013) Sleep Breath , vol.17 , pp. 1117-1118
    • Lehrer, S.1    Green, S.2    Ramanathan, L.3    Rosenzweig, K.E.4
  • 23
    • 84879076869 scopus 로고    scopus 로고
    • ING5 is a Tip60 cofactor that acetylates p53 in response to DNA damage
    • Liu N, Wang J, Wang J, et al. (2013). ING5 is a Tip60 cofactor that acetylates p53 in response to DNA damage. Cancer Res 73, 3749-3760.
    • (2013) Cancer Res , vol.73 , pp. 3749-3760
    • Liu, N.1    Wang, J.2    Wang, J.3
  • 24
    • 84892983160 scopus 로고    scopus 로고
    • The genomewide landscape of DNA methylation and hydroxymethylation in response to sleep deprivation impacts on synaptic plasticity genes
    • Massart R, Freyburger M, Suderman M, et al. (2014). The genomewide landscape of DNA methylation and hydroxymethylation in response to sleep deprivation impacts on synaptic plasticity genes. Transl Psychiatry 4, e347.
    • (2014) Transl Psychiatry , vol.4
    • Massart, R.1    Freyburger, M.2    Suderman, M.3
  • 25
    • 84875236078 scopus 로고    scopus 로고
    • Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome
    • Möller-Levet CS, Archer SN, Bucca G, et al., (2013). Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome. Proc Natl Acad Sci U S A 110, E1132-E1141.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. E1132-E1141
    • Möller-Levet, C.S.1    Archer, S.N.2    Bucca, G.3
  • 26
    • 47549107689 scopus 로고    scopus 로고
    • GeneMANIA: A real-time multiple association network integration algorithm for predicting gene function
    • Mostafavi S, Ray D, Warde-Farley D, Grouios C, and Morris Q. (2008). GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol 9 Suppl 1, S4.
    • (2008) Genome Biol , vol.9
    • Mostafavi, S.1    Ray, D.2    Warde-Farley, D.3    Grouios, C.4    Morris, Q.5
  • 29
    • 0035097344 scopus 로고    scopus 로고
    • Anterior cingulate activity as a predictor of degree of treatment response in major depression: Evidence from brain electrical tomography analysis
    • Pizzagalli D, Pascual-Marqui RD, Nitschke JB, et al. (2001). Anterior cingulate activity as a predictor of degree of treatment response in major depression: Evidence from brain electrical tomography analysis. Am J Psychiatry 158, 405-415.
    • (2001) Am J Psychiatry , vol.158 , pp. 405-415
    • Pizzagalli, D.1    Pascual-Marqui, R.D.2    Nitschke, J.B.3
  • 30
    • 84874396923 scopus 로고    scopus 로고
    • Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium Human Methylation 450 BeadChip array
    • Price ME, Cotton AM, Lam LL, et al. (2013). Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium Human Methylation 450 BeadChip array. Epigenetics Chromatin 6, 4.
    • (2013) Epigenetics Chromatin , vol.6 , pp. 4
    • Price, M.E.1    Cotton, A.M.2    Lam, L.L.3
  • 31
  • 33
    • 84905379002 scopus 로고    scopus 로고
    • Genomewide age-related changes in DNA methylation and gene expression in human PBMCs
    • Steegenga W, Boekschoten M, Lute C, et al. (2014). Genomewide age-related changes in DNA methylation and gene expression in human PBMCs. AGE 36, 1523-1540.
    • (2014) AGE , vol.36 , pp. 1523-1540
    • Steegenga, W.1    Boekschoten, M.2    Lute, C.3
  • 34
    • 79551600015 scopus 로고    scopus 로고
    • Targeting cancer stem cells by inhibiting Wnt, Notch, and Hedgehog pathways
    • Takebe N, Harris PJ, Warren RQ, and Ivy SP. (2011). Targeting cancer stem cells by inhibiting Wnt, Notch, and Hedgehog pathways. Nat Rev Clin Oncol 8, 97-106.
    • (2011) Nat Rev Clin Oncol , vol.8 , pp. 97-106
    • Takebe, N.1    Harris, P.J.2    Warren, R.Q.3    Ivy, S.P.4
  • 36
    • 84872564830 scopus 로고    scopus 로고
    • A betamixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
    • Teschendorff AE, Marabita F, Lechner M, et al. (2013). A betamixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics 29, 189-196.
    • (2013) Bioinformatics , vol.29 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3
  • 37
    • 84897489039 scopus 로고    scopus 로고
    • The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
    • Wagner JR, Busche S, Ge B, Kwan T, Pastinen T, and Blanchette M. (2014). The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts. Genome Biol 15, R37.
    • (2014) Genome Biol , vol.15
    • Wagner, J.R.1    Busche, S.2    Ge, B.3    Kwan, T.4    Pastinen, T.5    Blanchette, M.6
  • 38
    • 78650014980 scopus 로고    scopus 로고
    • The altered expression of ING5 protein is involved in gastric carcinogenesis and subsequent progression
    • Xing YN, Yang X, Xu XY, et al. (2011). The altered expression of ING5 protein is involved in gastric carcinogenesis and subsequent progression. Hum Pathol 42, 25-35.
    • (2011) Hum Pathol , vol.42 , pp. 25-35
    • Xing, Y.N.1    Yang, X.2    Xu, X.Y.3
  • 39
    • 84887485993 scopus 로고    scopus 로고
    • Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies
    • Yousefi P, Huen K, Schall RA, et al. (2013). Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies. Epigenetics 8, 1141-1152.
    • (2013) Epigenetics , vol.8 , pp. 1141-1152
    • Yousefi, P.1    Huen, K.2    Schall, R.A.3
  • 40
    • 79951581747 scopus 로고    scopus 로고
    • The nuclear to cytoplasmic shift of ING5 protein during colorectal carcinogenesis with their distinct links to pathologic behaviors of carcinomas
    • Zheng HC, Xia P, Xu XY, Takahashi H, and Takano Y, (2011). The nuclear to cytoplasmic shift of ING5 protein during colorectal carcinogenesis with their distinct links to pathologic behaviors of carcinomas. Hum Pathol 42, 424-433.
    • (2011) Hum Pathol , vol.42 , pp. 424-433
    • Zheng, H.C.1    Xia, P.2    Xu, X.Y.3    Takahashi, H.4    Takano, Y.5


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