-
3
-
-
84864341778
-
Enterobacter cloacae complex: Clinical impact and emerging antibiotic resistance
-
Mezzatesta, M. L., Gona, F. & Stefani, S. Enterobacter cloacae complex: clinical impact and emerging antibiotic resistance. Future Microbiol. 7, 887-902 (2012).
-
(2012)
Future Microbiol.
, vol.7
, pp. 887-902
-
-
Mezzatesta, M.L.1
Gona, F.2
Stefani, S.3
-
4
-
-
84931264872
-
Enterobacter aerogenes and enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment
-
Davin-Regli, A. & Pagès, J. M. Enterobacter aerogenes and Enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment. Front Microbiol. 6, 392 (2015).
-
(2015)
Front Microbiol.
, vol.6
, pp. 392
-
-
Davin-Regli, A.1
Pagès, J.M.2
-
5
-
-
8244233838
-
Enterobacter spp.: Pathogens poised to flourish at the turn of the century
-
Sanders, W. E. & Sanders, C. C. Enterobacter spp.: pathogens poised to flourish at the turn of the century. Clin. Microbiol. Rev. 10, 220-241 (1997).
-
(1997)
Clin. Microbiol. Rev.
, vol.10
, pp. 220-241
-
-
Sanders, W.E.1
Sanders, C.C.2
-
6
-
-
83655169845
-
Antibacterial agents: Back to the future? Can we live with only colistin, co-trimoxazole and fosfomycin?
-
Carlet, J. & Mainardi, J. L. Antibacterial agents: back to the future? Can we live with only colistin, co-trimoxazole and fosfomycin? Clin. Microbiol. Infect. 18, 1-3 (2012).
-
(2012)
Clin. Microbiol. Infect
, vol.18
, pp. 1-3
-
-
Carlet, J.1
Mainardi, J.L.2
-
8
-
-
79953851292
-
What remains against carbapenem-resistant enterobacteriaceae? Evaluation of chloramphenicol, ciprofloxacin, colistin, fosfomycin, minocycline, nitrofurantoin, temocillin and tigecycline
-
Livermore, D. M. et al. What remains against carbapenem-resistant Enterobacteriaceae? Evaluation of chloramphenicol, ciprofloxacin, colistin, fosfomycin, minocycline, nitrofurantoin, temocillin and tigecycline. Int. J. Antimicrob. Agents. 37, 415-419 (2011).
-
(2011)
Int. J. Antimicrob. Agents.
, vol.37
, pp. 415-419
-
-
Livermore, D.M.1
-
9
-
-
70449120276
-
Antimicrobial susceptibility testing: A primer for clinicians
-
Kuper, K. M., Boles, D. M., Mohr, J. F. & Wanger, A. Antimicrobial susceptibility testing: a primer for clinicians. Pharmacotherapy 29, 1326-1343 (2009).
-
(2009)
Pharmacotherapy
, vol.29
, pp. 1326-1343
-
-
Kuper, K.M.1
Boles, D.M.2
Mohr, J.F.3
Wanger, A.4
-
10
-
-
84906097341
-
Colistin heteroresistance in enterobacter cloacae is associated with cross-resistance to the host antimicrobial lysozyme
-
Napier, B. A., Band, V., Burd, E. M. & Weiss, D. S. Colistin heteroresistance in enterobacter cloacae is associated with cross-resistance to the host antimicrobial lysozyme. Antimicrob. Agents Chemother. 58, 5594-5597 (2014).
-
(2014)
Antimicrob. Agents Chemother.
, vol.58
, pp. 5594-5597
-
-
Napier, B.A.1
Band, V.2
Burd, E.M.3
Weiss, D.S.4
-
11
-
-
84871859996
-
Dynamic persistence of antibiotic-stressed mycobacteria
-
Wakamoto, Y. et al. Dynamic persistence of antibiotic-stressed mycobacteria. Science 339, 91-95 (2013).
-
(2013)
Science
, vol.339
, pp. 91-95
-
-
Wakamoto, Y.1
-
12
-
-
84908456444
-
Phenotypic variation of salmonella in host tissues delays eradication by antimicrobial chemotherapy
-
Claudi, B. et al. Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell 158, 722-733 (2014).
-
(2014)
Cell
, vol.158
, pp. 722-733
-
-
Claudi, B.1
-
13
-
-
84895490117
-
Cecum lymph node dendritic cells harbor slow-growing bacteria phenotypically tolerant to antibiotic treatment
-
Kaiser, P. et al. Cecum lymph node dendritic cells harbor slow-growing bacteria phenotypically tolerant to antibiotic treatment. PLoS Biol. 12, e1001793 (2014).
-
(2014)
PLoS Biol.
, vol.12
, pp. e1001793
-
-
Kaiser, P.1
-
14
-
-
35349016235
-
Recognition of microorganisms and activation of the immune response
-
Medzhitov, R. Recognition of microorganisms and activation of the immune response. Nature 449, 819-826 (2007).
-
(2007)
Nature
, vol.449
, pp. 819-826
-
-
Medzhitov, R.1
-
15
-
-
0024428780
-
The liposome-mediated macrophage 'suicide' technique
-
Van Rooijen, N. The liposome-mediated macrophage 'suicide' technique. J. Immunol. Methods 124, 1-6 (1989).
-
(1989)
J. Immunol. Methods
, vol.124
, pp. 1-6
-
-
Van Rooijen, N.1
-
16
-
-
0021031977
-
Mechanisms of macrophage antimicrobial activity
-
Nathan, C. F. Mechanisms of macrophage antimicrobial activity. Trans. R. Soc. Trop. Med. Hyg. 77, 620-630 (1983).
-
(1983)
Trans. R. Soc. Trop. Med. Hyg.
, vol.77
, pp. 620-630
-
-
Nathan, C.F.1
-
17
-
-
0036395928
-
Macrophage signaling and respiratory burst
-
Iles, K. E. & Forman, H. J. Macrophage signaling and respiratory burst. Immunol. Res. 26, 95-105 (2002).
-
(2002)
Immunol. Res.
, vol.26
, pp. 95-105
-
-
Iles, K.E.1
Forman, H.J.2
-
18
-
-
0038377583
-
2+ stimulon of Escherichia coli
-
2+ stimulon of Escherichia coli. J. Bacteriol. 185, 3696-3702 (2003).
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3696-3702
-
-
Minagawa, S.1
-
19
-
-
0026498184
-
Salmonella typhimurium activates virulence gene transcription within acidified macrophage phagosomes
-
Alpuche Aranda, C. M., Swanson, J. A., Loomis, W. P. & Miller, S. I. Salmonella typhimurium activates virulence gene transcription within acidified macrophage phagosomes. Proc. Natl Acad. Sci. USA 89, 10079-10083 (1992).
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10079-10083
-
-
Alpuche Aranda, C.M.1
Swanson, J.A.2
Loomis, W.P.3
Miller, S.I.4
-
20
-
-
14544307890
-
Dissecting the PhoP regulatory network of Escherichia coli and salmonella enterica
-
Zwir, I. et al. Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica. Proc. Natl Acad. Sci. USA 102, 2862-2867 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 2862-2867
-
-
Zwir, I.1
-
21
-
-
27144539863
-
Resolvase-in vivo expression technology analysis of the salmonella enterica serovar typhimurium PhoP and PmrA regulons in BALB/c mice
-
Merighi, M., Ellermeier, C. D., Slauch, J. M. & Gunn, J. S. Resolvase-in vivo expression technology analysis of the Salmonella enterica serovar Typhimurium PhoP and PmrA regulons in BALB/c mice. J. Bacteriol. 187, 7407-7416 (2005).
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7407-7416
-
-
Merighi, M.1
Ellermeier, C.D.2
Slauch, J.M.3
Gunn, J.S.4
-
22
-
-
84906078141
-
Serratia marcescens arn, a PhoP-regulated locus necessary for polymyxin B resistance
-
Lin, Q. Y. et al. Serratia marcescens arn, a PhoP-regulated locus necessary for polymyxin B resistance. Antimicrob. Agents Chemother. 58, 5181-5190 (2014).
-
(2014)
Antimicrob. Agents Chemother.
, vol.58
, pp. 5181-5190
-
-
Lin, Q.Y.1
-
23
-
-
19944378807
-
Comparison of the PhoPQ regulon in Escherichia coli and salmonella typhimurium
-
Monsieurs, P. et al. Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. J. Mol. Evol. 60, 462-474 (2005).
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 462-474
-
-
Monsieurs, P.1
-
24
-
-
0036033707
-
Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12
-
Oshima, T. et al. Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol. Microbiol. 46, 281-291 (2002).
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 281-291
-
-
Oshima, T.1
-
25
-
-
72049086558
-
Activated by different signals, the Phop/PhoQ two-component system differentially regulates metal uptake
-
Choi, E., Groisman, E. A. & Shin, D. Activated by different signals, the PhoP/PhoQ two-component system differentially regulates metal uptake. J. Bacteriol. 191, 7174-7181 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 7174-7181
-
-
Choi, E.1
Groisman, E.A.2
Shin, D.3
-
26
-
-
85019777142
-
Mechanisms of antimicrobial peptide resistance in gram-negative bacteria
-
Band, V. I. & Weiss, D. S. Mechanisms of antimicrobial peptide resistance in Gram-negative bacteria. Antibiotics (Basel) 4, 18-41 (2015).
-
(2015)
Antibiotics (Basel)
, vol.4
, pp. 18-41
-
-
Band, V.I.1
Weiss, D.S.2
-
27
-
-
34548605458
-
Lipid A modification systems in gram-negative bacteria
-
Raetz, C. R., Reynolds, C. M., Trent, M. S. & Bishop, R. E. Lipid A modification systems in Gram-negative bacteria. Annu. Rev. Biochem. 76, 295-329 (2007).
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 295-329
-
-
Raetz, C.R.1
Reynolds, C.M.2
Trent, M.S.3
Bishop, R.E.4
-
28
-
-
84855195248
-
Characterization and transcriptome analysis of mycobacterium tuberculosis persisters
-
Keren, I., Minami, S., Rubin, E. & Lewis, K. Characterization and transcriptome analysis of Mycobacterium tuberculosis persisters. mBio 2, e00100-e00111 (2011).
-
(2011)
MBio
, vol.2
, pp. e00100-e00111
-
-
Keren, I.1
Minami, S.2
Rubin, E.3
Lewis, K.4
-
29
-
-
84892181925
-
Internalization of salmonella by macrophages induces formation of nonreplicating persisters
-
Helaine, S. et al. Internalization of Salmonella by macrophages induces formation of nonreplicating persisters. Science 343, 204-208 (2014).
-
(2014)
Science
, vol.343
, pp. 204-208
-
-
Helaine, S.1
-
30
-
-
84920989061
-
Mode of action of streptomycin on type B hemophilus influenzae: II. Nature of resistant variants
-
Alexander, H. E. & Leidy, G. Mode of action of streptomycin on type B Hemophilus influenzae: II. Nature of resistant variants. J. Exp. Med. 85, 607-621 (1947).
-
(1947)
J. Exp. Med.
, vol.85
, pp. 607-621
-
-
Alexander, H.E.1
Leidy, G.2
-
31
-
-
0035193696
-
Hetero-resistance: An under-recognised confounder in diagnosis and therapy?
-
Rinder, H. Hetero-resistance: an under-recognised confounder in diagnosis and therapy? J. Med. Microbiol. 50, 1018-1020 (2001).
-
(2001)
J. Med. Microbiol.
, vol.50
, pp. 1018-1020
-
-
Rinder, H.1
-
32
-
-
84932628021
-
Mixed infections and rifampin heteroresistance among mycobacterium tuberculosis clinical isolates
-
Zheng, C. et al. Mixed infections and rifampin heteroresistance among mycobacterium tuberculosis clinical isolates. J. Clin. Microbiol. 53, 2138-2147 (2015).
-
(2015)
J. Clin. Microbiol.
, vol.53
, pp. 2138-2147
-
-
Zheng, C.1
-
33
-
-
84920971179
-
Antimicrobial heteroresistance: An emerging field in need of clarity
-
El-Halfawy, O. M. & Valvano, M. A. Antimicrobial heteroresistance: an emerging field in need of clarity. Clin. Microbiol. Rev. 28, 191-207 (2015).
-
(2015)
Clin. Microbiol. Rev.
, vol.28
, pp. 191-207
-
-
El-Halfawy, O.M.1
Valvano, M.A.2
-
34
-
-
84897885108
-
Heteroresistance of helicobacter pylori from the same patient prior to antibiotic treatment
-
Kao, C. Y. et al. Heteroresistance of Helicobacter pylori from the same patient prior to antibiotic treatment. Infect. Genet. Evol. 23, 196-202 (2014).
-
(2014)
Infect. Genet. Evol.
, vol.23
, pp. 196-202
-
-
Kao, C.Y.1
-
35
-
-
79955917005
-
New vector tools with a hygromycin resistance marker for use with opportunistic pathogens
-
Kalivoda, E. J. et al. New vector tools with a hygromycin resistance marker for use with opportunistic pathogens. Mol. Biotechnol. 48, 7-14 (2011).
-
(2011)
Mol. Biotechnol.
, vol.48
, pp. 7-14
-
-
Kalivoda, E.J.1
-
36
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
-
Horton, R. M., Hunt, H. D., Ho, S. N., Pullen, J. K. & Pease, L. R. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77, 61-68 (1989).
-
(1989)
Gene
, vol.77
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
37
-
-
0029061955
-
An improved system for gene replacement and xylE fusion analysis in pseudomonas aeruginosa
-
Schweizer, H. P. & Hoang, T. T. An improved system for gene replacement and xylE fusion analysis in Pseudomonas aeruginosa. Gene 158, 15-22 (1995).
-
(1995)
Gene
, vol.158
, pp. 15-22
-
-
Schweizer, H.P.1
Hoang, T.T.2
-
38
-
-
78149455681
-
Rational design of a plasmid origin that replicates efficiently in both gram-positive and gram-negative bacteria
-
Bryksin, A. V. & Matsumura, I. Rational design of a plasmid origin that replicates efficiently in both gram-positive and gram-negative bacteria. PLoS ONE 5, e13244 (2010).
-
(2010)
PLoS ONE
, vol.5
, pp. e13244
-
-
Bryksin, A.V.1
Matsumura, I.2
-
40
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren, S. et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnol. 30, 693-700 (2012).
-
(2012)
Nature Biotechnol.
, vol.30
, pp. 693-700
-
-
Koren, S.1
-
41
-
-
84874322149
-
ALE: A generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
-
Clark, S. C., Egan, R., Frazier, P. I. & Wang, Z. ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. Bioinformatics 29, 435-443 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 435-443
-
-
Clark, S.C.1
Egan, R.2
Frazier, P.I.3
Wang, Z.4
-
42
-
-
77949587649
-
Fast and accurate long-read alignment with burrows-wheeler transform
-
Li, H. & Durbin, R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26, 589-595 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
43
-
-
68549104404
-
The sequence Alignment/Map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
44
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
45
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-seq
-
Roberts, A., Pimentel, H., Trapnell, C. & Pachter, L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 27, 2325-2329 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
46
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protoc. 7, 562-578 (2012).
-
(2012)
Nature Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
47
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz, S. et al. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36, 3420-3435 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
-
48
-
-
84889839494
-
Irreproducible and uninterpretable polymyxin B MICs for enterobacter cloacae and enterobacter aerogenes
-
Landman, D., Salamera, J. & Quale, J. Irreproducible and uninterpretable polymyxin B MICs for Enterobacter cloacae and Enterobacter aerogenes. J. Clin. Microbiol. 51, 4106-4111 (2013).
-
(2013)
J. Clin. Microbiol.
, vol.51
, pp. 4106-4111
-
-
Landman, D.1
Salamera, J.2
Quale, J.3
-
49
-
-
44949231424
-
Analyzing real-time PCR data by the comparative C(T) method
-
Schmittgen, T. D. & Livak, K. J. Analyzing real-time PCR data by the comparative C(T) method. Nature Protoc. 3, 1101-1108 (2008).
-
(2008)
Nature Protoc.
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
50
-
-
77953523940
-
Activation of PmrA inhibits LpxTdependent phosphorylation of lipid A promoting resistance to antimicrobial peptides
-
Herrera, C. M., Hankins, J. V. & Trent, M. S. Activation of PmrA inhibits LpxTdependent phosphorylation of lipid A promoting resistance to antimicrobial peptides. Mol. Microbiol. 76, 1444-1460 (2010).
-
(2010)
Mol. Microbiol.
, vol.76
, pp. 1444-1460
-
-
Herrera, C.M.1
Hankins, J.V.2
Trent, M.S.3
|