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Volumn 5, Issue 10, 2010, Pages

Rational design of a plasmid origin that replicates efficiently in both gram-positive and gram-negative bacteria

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; RECOMBINANT DNA; PRIMER DNA;

EID: 78149455681     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013244     Document Type: Article
Times cited : (82)

References (39)
  • 1
    • 77952492062 scopus 로고    scopus 로고
    • Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology
    • Huang HH, Camsund D, Lindblad P, Heidorn T (2010) Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology. Nucleic Acids Res 38: 2577-2593.
    • (2010) Nucleic Acids Res , vol.38 , pp. 2577-2593
    • Huang, H.H.1    Camsund, D.2    Lindblad, P.3    Heidorn, T.4
  • 2
    • 70349428426 scopus 로고    scopus 로고
    • New plasmid tools for genetic analysis of Actinobacillus pleuropneumoniae and other pasteurellaceae
    • Bosse JT, Durham AL, Rycroft AN, Kroll JS, Langford PR (2009) New plasmid tools for genetic analysis of Actinobacillus pleuropneumoniae and other pasteurellaceae. Appl Environ Microbiol 75: 6124-6131.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6124-6131
    • Bosse, J.T.1    Durham, A.L.2    Rycroft, A.N.3    Kroll, J.S.4    Langford, P.R.5
  • 3
    • 67649205495 scopus 로고    scopus 로고
    • A plasmid RK2-based broad-host-range cloning vector useful for transfer of metagenomic libraries to a variety of bacterial species
    • Aakvik T, Degnes KF, Dahlsrud R, Schmidt F, Dam R, et al. (2009) A plasmid RK2-based broad-host-range cloning vector useful for transfer of metagenomic libraries to a variety of bacterial species. FEMS Microbiol Lett 296: 149-158.
    • (2009) FEMS Microbiol Lett , vol.296 , pp. 149-158
    • Aakvik, T.1    Degnes, K.F.2    Dahlsrud, R.3    Schmidt, F.4    Dam, R.5
  • 4
    • 20444417458 scopus 로고    scopus 로고
    • The evolution of IncP catabolic plasmids
    • Dennis JJ (2005) The evolution of IncP catabolic plasmids. Curr Opin Biotechnol 16: 291-298.
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 291-298
    • Dennis, J.J.1
  • 5
    • 0021217886 scopus 로고
    • Construction of plasmid cloning vectors for lactic streptococci which also replicate in Bacillus subtilis and Escherichia coli
    • Kok J, van der Vossen JM, Venema G (1984) Construction of plasmid cloning vectors for lactic streptococci which also replicate in Bacillus subtilis and Escherichia coli. Appl Environ Microbiol 48: 726-731.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 726-731
    • Kok, J.1    van der Vossen, J.M.2    Venema, G.3
  • 6
    • 12344321610 scopus 로고    scopus 로고
    • Cloning vectors based on cryptic plasmids isolated from lactic acid bacteria: Their characteristics and potential applications in biotechnology
    • Shareck J, Choi Y, Lee B, Miguez CB (2004) Cloning vectors based on cryptic plasmids isolated from lactic acid bacteria: their characteristics and potential applications in biotechnology. Crit Rev Biotechnol 24: 155-208.
    • (2004) Crit Rev Biotechnol , vol.24 , pp. 155-208
    • Shareck, J.1    Choi, Y.2    Lee, B.3    Miguez, C.B.4
  • 7
    • 0025868077 scopus 로고
    • Nucleotide sequence and characterization of the broad-host-range lactococcal plasmid pWVO1
    • Leenhouts KJ, Tolner B, Bron S, Kok J, Venema G, et al. (1991) Nucleotide sequence and characterization of the broad-host-range lactococcal plasmid pWVO1. Plasmid 26: 55-66.
    • (1991) Plasmid , vol.26 , pp. 55-66
    • Leenhouts, K.J.1    Tolner, B.2    Bron, S.3    Kok, J.4    Venema, G.5
  • 8
    • 67349214924 scopus 로고    scopus 로고
    • Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains
    • Boer DR, Ruiz-Maso JA, Lopez-Blanco JR, Blanco AG, Vives-Llacer M, et al. (2009) Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains. EMBO J 28: 1666-1678.
    • (2009) EMBO J , vol.28 , pp. 1666-1678
    • Boer, D.R.1    Ruiz-Maso, J.A.2    Lopez-Blanco, J.R.3    Blanco, A.G.4    Vives-Llacer, M.5
  • 10
    • 14544275047 scopus 로고    scopus 로고
    • Plasmid rolling-circle replication: Highlights of two decades of research
    • Khan SA (2005) Plasmid rolling-circle replication: highlights of two decades of research. Plasmid 53: 126-136.
    • (2005) Plasmid , vol.53 , pp. 126-136
    • Khan, S.A.1
  • 11
    • 0026801262 scopus 로고
    • New thermosensitive plasmid for gram-positive bacteria
    • Maguin E, Duwat P, Hege T, Ehrlich D, Gruss A (1992) New thermosensitive plasmid for gram-positive bacteria. J Bacteriol 174: 5633-5638.
    • (1992) J Bacteriol , vol.174 , pp. 5633-5638
    • Maguin, E.1    Duwat, P.2    Hege, T.3    Ehrlich, D.4    Gruss, A.5
  • 12
    • 0028823264 scopus 로고
    • Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWV01
    • Seegers JF, Zhao AC, Meijer WJ, Khan SA, Venema G, et al. (1995) Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWV01. Mol Gen Genet 249: 43-50.
    • (1995) Mol Gen Genet , vol.249 , pp. 43-50
    • Seegers, J.F.1    Zhao, A.C.2    Meijer, W.J.3    Khan, S.A.4    Venema, G.5
  • 14
    • 0027478123 scopus 로고
    • Molecular genetics of aminoglycoside resistance genes and familial relationships of the aminoglycosidemodifying enzymes
    • Shaw KJ, Rather PN, Hare RS, Miller GH (1993) Molecular genetics of aminoglycoside resistance genes and familial relationships of the aminoglycosidemodifying enzymes. Microbiol Rev 57: 138-163.
    • (1993) Microbiol Rev , vol.57 , pp. 138-163
    • Shaw, K.J.1    Rather, P.N.2    Hare, R.S.3    Miller, G.H.4
  • 15
    • 45149118469 scopus 로고    scopus 로고
    • Engineering BioBrick vectors from BioBrick parts
    • Shetty RP, Endy D, Knight TF, Jr. (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2: 5.
    • (2008) J Biol Eng , vol.2 , pp. 5
    • Shetty, R.P.1    Endy, D.2    Knight Jr., T.F.3
  • 16
    • 0023487240 scopus 로고
    • A T5 promoter-based transcription-translation system for the analysis of proteins in vitro and in vivo
    • Bujard H, Gentz R, Lanzer M, Stueber D, Mueller M, et al. (1987) A T5 promoter-based transcription-translation system for the analysis of proteins in vitro and in vivo. Methods Enzymol 155: 416-433.
    • (1987) Methods Enzymol , vol.155 , pp. 416-433
    • Bujard, H.1    Gentz, R.2    Lanzer, M.3    Stueber, D.4    Mueller, M.5
  • 17
    • 0024334198 scopus 로고
    • The family of highly interrelated single-stranded deoxyribonucleic acid plasmids
    • Gruss A, Ehrlich SD (1989) The family of highly interrelated single-stranded deoxyribonucleic acid plasmids. Microbiol Rev 53: 231-241.
    • (1989) Microbiol Rev , vol.53 , pp. 231-241
    • Gruss, A.1    Ehrlich, S.D.2
  • 19
    • 0027368569 scopus 로고
    • Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils
    • Romanowski G, Lorenz MG, Wackernagel W (1993) Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils. Appl Environ Microbiol 59: 3438-3446.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3438-3446
    • Romanowski, G.1    Lorenz, M.G.2    Wackernagel, W.3
  • 20
    • 0030426157 scopus 로고    scopus 로고
    • DNA in soil: Adsorption, genetic transformation, molecular evolution and genetic microchip
    • Trevors JT (1996) DNA in soil: adsorption, genetic transformation, molecular evolution and genetic microchip. Antonie Van Leeuwenhoek 70: 1-10.
    • (1996) Antonie Van Leeuwenhoek , vol.70 , pp. 1-10
    • Trevors, J.T.1
  • 21
    • 33745787719 scopus 로고    scopus 로고
    • Persistence of transgenic and not transgenic extracellular DNA in soil and bacterial transformation
    • Pietramellara G, Ceccherini MT, Ascher J, Nannipieri P (2006) Persistence of transgenic and not transgenic extracellular DNA in soil and bacterial transformation. Riv Biol 99: 37-68.
    • (2006) Riv Biol , vol.99 , pp. 37-68
    • Pietramellara, G.1    Ceccherini, M.T.2    Ascher, J.3    Nannipieri, P.4
  • 22
    • 77954129578 scopus 로고    scopus 로고
    • Overlap extension PCR cloning: A simple and reliable way to create recombinant plasmids
    • Bryksin AV, Matsumura I (2010) Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. BioTechniques 48: 305-307.
    • (2010) BioTechniques , vol.48 , pp. 305-307
    • Bryksin, A.V.1    Matsumura, I.2
  • 23
    • 0036225026 scopus 로고    scopus 로고
    • Polymorphism in repeated 16S rRNA genes is a common property of type strains and environmental isolates of the genus Vibrio
    • Moreno C, Romero J, Espejo RT (2002) Polymorphism in repeated 16S rRNA genes is a common property of type strains and environmental isolates of the genus Vibrio. Microbiology 148: 1233-1239.
    • (2002) Microbiology , vol.148 , pp. 1233-1239
    • Moreno, C.1    Romero, J.2    Espejo, R.T.3
  • 24
    • 78149431217 scopus 로고    scopus 로고
    • Construction of long DNA molecules from multiple fragments using PCR
    • In: Hughes S, Moody A, eds., London: Scion Publishing
    • Shevchuk NA, Bryksin AV (2007) Construction of long DNA molecules from multiple fragments using PCR. In: Hughes S, Moody A, eds. PCR (Methods Express Series). London: Scion Publishing. pp 197-216.
    • (2007) PCR (Methods Express Series) , pp. 197-216
    • Shevchuk, N.A.1    Bryksin, A.V.2
  • 25
    • 76249122016 scopus 로고    scopus 로고
    • Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution
    • Jun SR, Sims GE, Wu GA, Kim SH (2010) Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proc Natl Acad Sci U S A 107: 133-138.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 133-138
    • Jun, S.R.1    Sims, G.E.2    Wu, G.A.3    Kim, S.H.4
  • 26
    • 77952299299 scopus 로고    scopus 로고
    • Reconstructing genome trees of prokaryotes using overlapping genes
    • Cheng CH, Yang CH, Chiu HT, Lu CL (2010) Reconstructing genome trees of prokaryotes using overlapping genes. BMC Bioinformatics 11: 102.
    • (2010) BMC Bioinformatics , vol.11 , pp. 102
    • Cheng, C.H.1    Yang, C.H.2    Chiu, H.T.3    Lu, C.L.4
  • 29
    • 0025865798 scopus 로고
    • Mry, a trans-acting positive regulator of the M protein gene of Streptococcus pyogenes with similarity to the receptor proteins of two-component regulatory systems
    • Perez-Casal J, Caparon MG, Scott JR (1991) Mry, a trans-acting positive regulator of the M protein gene of Streptococcus pyogenes with similarity to the receptor proteins of two-component regulatory systems. J Bacteriol 173: 2617-2624.
    • (1991) J Bacteriol , vol.173 , pp. 2617-2624
    • Perez-Casal, J.1    Caparon, M.G.2    Scott, J.R.3
  • 30
    • 33646722147 scopus 로고    scopus 로고
    • Emergent properties of reduced-genome Escherichia coli
    • Posfai G, Plunkett G, 3rd, Feher T, Frisch D, Keil GM, et al. (2006) Emergent properties of reduced-genome Escherichia coli. Science 312: 1044-1046.
    • (2006) Science , vol.312 , pp. 1044-1046
    • Posfai, G.1    Plunkett III, G.2    Feher, T.3    Frisch, D.4    Keil, G.M.5
  • 31
    • 23344436798 scopus 로고    scopus 로고
    • Borrelia burgdorferi rel is responsible for generation of guanosine-39-diphosphate-59- triphosphate and growth control
    • Bugrysheva JV, Bryksin AV, Godfrey HP, Cabello FC (2005) Borrelia burgdorferi rel is responsible for generation of guanosine-39-diphosphate-59- triphosphate and growth control. Infect Immun 73: 4972-4981.
    • (2005) Infect Immun , vol.73 , pp. 4972-4981
    • Bugrysheva, J.V.1    Bryksin, A.V.2    Godfrey, H.P.3    Cabello, F.C.4
  • 33
    • 0015224110 scopus 로고
    • The loss of tumor-initiating ability in Agrobacterium tumefaciens by incubation at high temperature
    • Hamilton RH, Fall MZ (1971) The loss of tumor-initiating ability in Agrobacterium tumefaciens by incubation at high temperature. Experientia 27: 229-230.
    • (1971) Experientia , vol.27 , pp. 229-230
    • Hamilton, R.H.1    Fall, M.Z.2
  • 35
    • 0015854870 scopus 로고
    • Phenotypes of pleiotropic-negative sporulation mutants of Bacillus subtilis
    • Brehm SP, Staal SP, Hoch JA (1973) Phenotypes of pleiotropic-negative sporulation mutants of Bacillus subtilis. J Bacteriol 115: 1063-1070.
    • (1973) J Bacteriol , vol.115 , pp. 1063-1070
    • Brehm, S.P.1    Staal, S.P.2    Hoch, J.A.3
  • 36
    • 0031855362 scopus 로고    scopus 로고
    • Development of competence in Streptococcus pneumonaie: Pheromone autoinduction and control of quorum sensing by the oligopeptide permease
    • Alloing G, Martin B, Granadel C, Claverys JP (1998) Development of competence in Streptococcus pneumonaie: pheromone autoinduction and control of quorum sensing by the oligopeptide permease. Mol Microbiol 29: 75-83.
    • (1998) Mol Microbiol , vol.29 , pp. 75-83
    • Alloing, G.1    Martin, B.2    Granadel, C.3    Claverys, J.P.4
  • 37
    • 0000612766 scopus 로고
    • Release of genetic transforming agent from pneumococcal cultures during growth and disintegration
    • Ottolenghi E, Hotchkiss RD (1962) Release of genetic transforming agent from pneumococcal cultures during growth and disintegration. J Exp Med 116: 491-519.
    • (1962) J Exp Med , vol.116 , pp. 491-519
    • Ottolenghi, E.1    Hotchkiss, R.D.2
  • 38
    • 33144459955 scopus 로고    scopus 로고
    • Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi
    • Vaneechoutte M, Young DM, Ornston LN, De Baere T, Nemec A, et al. (2006) Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi. Appl Environ Microbiol 72: 932-936.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 932-936
    • Vaneechoutte, M.1    Young, D.M.2    Ornston, L.N.3    De Baere, T.4    Nemec, A.5
  • 39
    • 34249044447 scopus 로고    scopus 로고
    • Type I interferon signaling is required for activation of the inflammasome during Francisella infection
    • Henry T, Brotcke A, Weiss DS, Thompson LJ, Monack DM (2007) Type I interferon signaling is required for activation of the inflammasome during Francisella infection. J Exp Med 204: 987-994.
    • (2007) J Exp Med , vol.204 , pp. 987-994
    • Henry, T.1    Brotcke, A.2    Weiss, D.S.3    Thompson, L.J.4    Monack, D.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.