Preparation of ds-DNA functionalized magnetic nanobaits for screening of bioactive compounds from medicinal plant

Materials Science and Engineering C

Volumn 56, Issue , 2015, Pages 401-408

  Yuan, Li ^a,d   Xu, Pei Li ^a,c   Zeng, Qiong ^a,d   Liu, Yi Ming ^a,b   Ding, Li Sheng ^a   Liao, Xun ^a  

^a CHENGDU INSTITUTE OF BIOLOGY   (China)

^b JACKSON STATE UNIVERSITY   (United States)

^c SHANGHAI INSTITUTE OF TECHNOLOGY   (China)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

DNA binders; ds DNA; Immobilization; Magnetic nanoparticles

Indexed keywords

BINDERS; BINS; CHEMICAL BONDS; CHROMATOGRAPHY; CYCLIC VOLTAMMETRY; DRUG PRODUCTS; FOURIER TRANSFORM INFRARED SPECTROSCOPY; GRAVIMETRIC ANALYSIS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; MAGNETISM; MASS SPECTROMETRY; NANOMAGNETICS; NANOPARTICLES; PLANT EXTRACTS; PLANTS (BOTANY); RADIOACTIVE WASTE VITRIFICATION; SATURATION MAGNETIZATION; SYNTHESIS (CHEMICAL); THERMOGRAVIMETRIC ANALYSIS; VOLTAMMETRY;

CHEMICAL CHARACTERIZATION; DIFFERENTIAL PULSE VOLTAMMETRY; FOURIER TRANSFORM INFRA RED (FTIR) SPECTROSCOPY; HIGH-SATURATION MAGNETIZATION; MAGNETIC NANO-PARTICLES; MAGNETIC NANOCOMPOSITES; MAGNETIC NANOPARTI CLES (MNPS); VIBRATING SAMPLE MAGNETOMETER;

DNA;

DNA; MAGNETITE NANOPARTICLE; NANOCOMPOSITE; PLANT EXTRACT;

CHEMISTRY; MEDICINAL PLANT; PINELLIA; PLANT ROOT;

DNA; MAGNETITE NANOPARTICLES; NANOCOMPOSITES; PINELLIA; PLANT EXTRACTS; PLANT ROOTS; PLANTS, MEDICINAL;

EID: 84973427355     PISSN: 09284931     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.msec.2015.06.050     Document Type: Article

References (51)

1. [1] Trieb, M., Rauch, C., Wibowo, F.R., Wellenzohn, B., Liedl, K.R., Cooperative effects on the formation of intercalation sites. Nucleic Acids Res. 32 (2004), 4696–4703.
2. 2. Chem. Eur. J. 19 (2013), 5401–5410.
3. [3] Hamelberg, D., McFail-Isom, L., Williams, L.D., Wilson, W.D., Flexible structure of DNA: ion dependence of minor-groove structure and dynamics. J. Am. Chem. Soc. 122 (2000), 10513–10520.
4. [4] Zhou, X.Y., Zhang, G.W., Pan, J.H., Groove binding interaction between daphnetin and calf thymus DNA. Int. J. Biol. Macromol. 74 (2015), 185–194.
5. [5] Xia, F., Zuo, X.L., Yang, R.Q., Xiao, Y., Kang, D., Vallee-Belisle, A., Gong, X., Heeger, A.J., Plaxco, K.W., On the binding of cationic, water-soluble conjugated polymers to DNA: electrostatic and hydrophobic interactions. J. Am. Chem. Soc. 132 (2010), 1252–1254.
6. [6] Baginski, M., Fogolari, F., Briggs, J.M., Electrostatic and non-electrostatic contributions to the binding free energies of anthracycline antibiotics to DNA. J. Mol. Biol. 274 (1997), 253–267.
7. [7] Hertzberg, R.P., Hecht, S.M., Reynolds, V.L., DNA sequence specificity of the pyrrolo [1,4] benzodiazepine antitumor antibiotics. Methidiumpropyl-EDTA-Iron(II) footprinting analysis of DNA binding sites for anthramycin and related drugs. Biochemistry, 1986, 1249–1258.
8. [8] Ford, K.G., Neidle, S., Perturbations in DNA structure upon interaction with porphyrins revealed by chemical probes, DNA footprinting and molecular modelling. Bioorg. Med. Chem. 3 (1995), 671–677.
9. [9] Powers, R., Applications of NMR to structure-based drug design in structural genomics. J. Struct. Funct. Genom. 2 (2002), 113–123.
10. [10] Jansen, B., Brouwer, J., Reedijk, J., Glutathione induces cellular resistance against cationic dinuclear platinum anticancer drugs. J. Inorg. Biochem. 89 (2002), 197–202.
11. [11] Chen, W.H., Chan, C.L., Cai, Z., Luo, G.A., Jiang, Z.H., Study on noncovalent complexes of cytotoxic protoberberine alkaloids with double-stranded DNA by using electrospray ionization mass spectrometry. Bioorg. Med. Chem. Lett. 14 (2004), 4955–4959.
12. [12] Wan, K.X., Shibue, T., Gross, M.L., Non-covalent complexes between DNA-binding drugs and double-stranded oligodeoxynucleotides: a study by ESI ion-trap mass spectrometry. J. Am. Chem. Soc. 122 (2000), 300–307.
13. [13] Denny, B.J., Wheelhouse, R.T., Stevens, M.F.G., Tsang, L.L.H., Slack, J.A., NMR and molecular modeling investigation of the mechanism of activation of the antitumor drug temozolomide and its interaction with DNA. Biochemistry 33 (1994), 9045–9051.
14. [14] Kalanur, S.S., Katrahalli, U., Seetharamappa, J., Electrochemical studies and spectroscopic investigations on the interaction of an anticancer drug with DNA and their analytical applications. J. Electroanal. Chem. 636 (2009), 93–100.
15. [15] Arjmand, F., Aziz, M., Tabassum, S., Cyclic voltammetry—an electrochemical approach to study metal-based potential antitumor drug–DNA interaction. Curr. Anal. Chem. 7 (2011), 71–79.
16. [16] Ye, B.X., Yuan, L.J., Chen, C., Tao, J.C., Electrochemical and spectroscopic study of the interaction of indirubin with DNA. Electroanalysis 17 (2005), 1523–1528.
17. [17] Rauf, S., Gooding, J.J., Akhtar, K., Ghauri, M.A., Rahman, M., Anwar, M.A., Khalid, A.M., Electrochemical approach of anticancer drugs–DNA interaction. J. Pharm. Biomed. Anal. 37 (2005), 205–217.
18. 2-actinomycin D complexes and its host DNA. J. Am. Chem. Soc. 116 (1994), 4154–4165.
19. [19] Negri, A., Marco, E., Garcı’A-Herna'Ndez, V., Domingo, A., Antitumor activity, X-ray crystal structure, and DNA binding properties of thiocoraline A, a natural bisintercalating thiodepsipeptide. J. Med. Chem. 50 (2007), 3322–3333.
20. [20] Li, N., Ma, Y., Yang, C., Guo, L., Yang, X., Interaction of anticancer drug mitoxantrone with DNA analyzed by electrochemical and spectroscopic methods. Biophys. Chem. 116 (2005), 199–205.
21. [21] Zhang, G., Hu, X., Fu, P., Spectroscopic studies on the interaction between carbaryl and calf thymus DNA with the use of ethidium bromide as a fluorescence probe. J. Photochem. Photobiol. B 108 (2012), 53–61.
22. [22] Reza, H.J., Guan, H.T., Electrochemical study on the interaction of irinotecan with calf thymus double stranded DNA. Chin. J. Chem. 30 (2012), 738–742.
23. [23] Churchill, M.E.A., Hayes, J.J., Tullius, T.D., Detection of drug binding to DNA by hydroxyl radical footprinting. relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5 s RNA genes of xenopus. Biochemistry 29 (1990), 6043–6050.
24. 2. Bioorg. Med. Chem. 11 (2003), 505–514.
25. [25] Kumar, A., Bora, U., Interactions of curcumin and its derivatives with nucleic acids and their implications. Mini-Rev. Med. Chem. 13 (2013), 256–264.
26. [26] Song, Z.L., Wang, H., Ren, B., Zhang, B.B., Hashi, Y.K., Chen, S.Z., On-line study of flavonoids of Trollius chinensis Bunge binding to DNA with ethidium bromide using a novel combination of chromatographic, mass spectrometric and fluorescence techniques. J. Chromatogr. A 1282 (2013), 102–112.
27. [27] Zhu, Y.T., Ren, X.Y., Liu, Y.M., Wei, Y., Qing, L.S., Liao, X., Covalent immobilization of porcine pancreatic lipase on carboxyl-activated magnetic nanoparticles: characterization and application for enzymatic inhibition assays. Mater. Sci. Eng. C 38 (2014), 278–285.
28. [28] Medley, C.D., Smith, J.E., Wigman, L.S., Chetwyn, N.P., A DNA-conjugated magnetic nanoparticle assay for assessing genotoxicity. Anal. Bioanal. Chem. 404 (2012), 2233–2239.
29. 2@poly-L-alanine, peptide brush-magnetic microspheres through NCA chemistry for drug delivery and enrichment of BSA. Colloids Surf. B Biointerfaces 81 (2010), 503–507.
30. [30] Dobson, J., Magnetic nanoparticles for drug delivery. Drug Dev. Res. 67 (2006), 55–60.
31. [31] Liu, L., Shi, S., Chen, X., Peng, M., Analysis of tyrosinase binders from Glycyrrhiza uralensis root: evaluation and comparison of tyrosinase immobilized magnetic fishing-HPLC and reverse ultrafiltration-HPLC. J. Chromatogr. B 932 (2013), 19–25.
32. [32] Govan, J., Gun'ko, Y.K., Recent advances in the application of magnetic nanoparticles as a support for homogeneous catalysts. Nanomaterials 4 (2014), 222–241.
33. 4 magnetic nanoparticles as catalyst for the luminol chemiluminescence system and their applications in hydrogen peroxide detection. Talanta 82 (2010), 377–383.
34. [34] Shi, H.L., Peng, S.L., Sun, J., Liu, Y.M., Zhu, Y.T., Qing, L.S., Liao, X., Selective extraction of berberine from Cortex Phellodendri using polydopamine-coated magnetic nanoparticles. J. Sep. Sci. 37 (2014), 704–710.
35. [35] Qinga, L.S., Xue, Y., Zheng, Y., Xiong, J., Liao, X., Ding, L.S., Li, B.G., Liu, Y.M., Ligand fishing from Dioscorea nipponica extract using human serum albumin functionalized magnetic nanoparticles. J. Chromatogr. A 1217 (2010), 4663–4668.
36. [36] Xue, Y., Xiong, J., Shi, H.L., Liu, Y.M., Qing, L.S., Liao, X., In vitro metabolic study of Rhizoma coptidis extract using liver microsomes immobilized on magnetic nanoparticles. Anal. Bioanal. Chem. 405 (2013), 8807–8817.
37. [37] Xu, N., Yang, H., Cui, M., Wan, C., Liu, S., High-performance liquid chromatography–electrospray ionization-mass spectrometry ligand fishing assay: a method for screening triplex DNA binders from natural plant extracts. Anal. Chem. 84 (2012), 2562–2568.
38. [38] Weigele, M., Debernardo, S., Leimgruber, W., Fluorometric assay of secondary amino acids. Biochem. Biophys. Res. Commun. 50 (1973), 352–356.
39. [39] Zhang, J.L., Srivastava, R.S., Misra, R.D.K., Core–shell magnetite nanoparticles surface encapsulated with smart stimuli-responsive polymer: synthesis, characterization, and LCST of viable drug-targeting delivery system. Langmuir 23 (2007), 6342–6351.
40. [40] Arora, K., Chaubey, A., Singhal, R., Singh, R.P., Pandey, M.K., Samanta, S.B., Malhotra, B.D., Chand, S., Application of electrochemically prepared polypyrrole-polyvinyl sulphonate films to DNA biosensor. Biosens. Bioelectron. 21 (2006), 1777–1783.
41. [41] Arotiba, O.A., Baker, P.G., Mamba, B.B., Iwuoha, E.I., The application of electrodeposited poly(propylene imine) dendrimer as an immobilisation layer in a simple electrochemical DNA biosensor. Int. J. Electrochem. Sci. 6 (2011), 673–683.
42. [42] Ferreira, V., Tenreiro, A., Abrantes, L.M., Electrochemical, microgravimetric and AFM studies of polythionine films — application as new support for the immobilisation of nucleotides. Sens. Actuators, B 119 (2006), 632–641.
43. [43] Nascimento, G.A., Souza, E.V.M., Campos-Ferreira, D.S., Arruda, M.S., Electrochemical DNA biosensor for bovine papillomavirus detection using polymeric film on screen-printed electrode. Biosens. Bioelectron. 38 (2012), 61–66.
44. [44] Zhu, N.N., Gao, H., Xu, Q., Lin, Y.Q., Su, L., Mao, L.Q., Sensitive impedimetric DNA biosensor with poly (amidoamine) dendrimer covalently attached onto carbon nanotube electronic transducers as the tether for surface confinement of probe DNA. Biosens. Bioelectron. 25 (2010), 1498–1503.
45. [45] Arotiba, O., Owino, J., Songa, E., Hendricks, N., Waryo, T., Jahed, N., Baker, P., Iwuoha, E., An electrochemical DNA biosensor developed on a nanocomposite platform of gold and poly (propyleneimine) dendrimer. Sensors 8 (2008), 6791–6809.
46. [46] Fink, H.W., Schönenberger, C., Electrical conduction through DNA molecules. Nature 398 (1999), 407–410.
47. [47] Giese, B., Amaudrut, J., Köhler, A.K., Spormann, M., Wessely, S., Direct observation of hole transfer through DNA by hopping between adenine bases and by tunnelling. Nature 412 (2001), 318–320.
48. [48] Su, X.Y., Kong, L., Li, X., Chen, X.G., Guo, M., Zou, H.F., Screening and analysis of bioactive compounds with biofingerprinting chromatogram analysis of traditional Chinese medicines targeting DNA by microdialysis/HPLC. J. Chromatogr. A 1076 (2005), 118–126.
49. [49] Schmeller, T., Latz-Bruing, B., Wink, M., Biochemical activities of berberine, palmatine and sanguinarine mediating chemical defence against microorganisms and herbivores. Phytochemistry 44 (1997), 257–266.
50. [50] Bao, M.M., Cao, Z.F., Yu, D., Fu, S.L., Zhang, G.H., Yang, P., Columbamine suppresses the proliferation and neovascularization of metastatic osteosarcoma U2OS cells with low cytotoxicity. Toxicol. Lett. 215 (2012), 174–180.
51. [51] Ebrahimi, M., Khayamian, T., Interactions of G-QUADRUPLEX DNA binding site with berberine derivatives and construct a structure-based QSAR using docking descriptors. Med. Chem. Res. 23 (2014), 1327–1339.