Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals

Science

Volumn 352, Issue 6288, 2016, Pages 1009-1013

  Lan, Xun ^a   Pritchard, Jonathan K ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; CYTOGENETICS; GENE; GENE EXPRESSION; GENOME; MUTATION; RODENT;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA RESPONSIVE ELEMENT; DOWN REGULATION; DUPLICATE GENE; EVOLUTIONARY ADAPTATION; FETUS; GENE CONTROL; GENE DOSAGE; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENETIC POLYMORPHISM; GENOME; HUMAN; HUMAN TISSUE; HUMAN VERSUS ANIMAL COMPARISON; LONG TERM SURVIVAL; LOSS OF FUNCTION MUTATION; MACACA; MAMMALIAN GENETICS; MOLECULAR EVOLUTION; NONHUMAN; PLACENTAL MAMMALS; PRIORITY JOURNAL; RNA SEQUENCE; SEGMENTAL DUPLICATION; ANIMAL; ANTIBODY SPECIFICITY; GENETICS; MOUSE; MUTATION; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS;

EUTHERIA; MAMMALIA;

ALCOHOL DEHYDROGENASE; BICARBONATE CHLORIDE ANTIPORTER; CBR1 PROTEIN, HUMAN; CBR3 PROTEIN, HUMAN; TRANSCRIPTOME;

ALCOHOL OXIDOREDUCTASES; ANIMALS; BASE SEQUENCE; CHLORIDE-BICARBONATE ANTIPORTERS; EVOLUTION, MOLECULAR; GENE DOSAGE; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENES, DUPLICATE; HUMANS; MICE; MUTATION; ORGAN SPECIFICITY; SEQUENCE ANALYSIS, RNA; TRANSCRIPTOME;

EID: 84971578311     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aad8411     Document Type: Article

References (24)

1. G. C. Conant, K. H. Wolfe, Nat. Rev. Genet. 9, 938-950 (2008).
2. M. Lynch, J. S. Conery, J. Struct. Funct. Genomics 3, 35-44 (2003).
3. H. Innan, F. Kondrashov, Nat. Rev. Genet. 11, 97-108 (2010).
4. A. Stoltzfus, J. Mol. Evol. 49, 169-181 (1999).
5. W. Qian, B. Y. Liao, A. Y. Chang, J. Zhang, Trends Genet. 26, 425-430 (2010).
6. G. C. Conant, J. A. Birchler, J. C. Pires, Curr. Opin. Plant Biol. 19, 91-98 (2014).
7. J. F. Gout, M. Lynch, Mol. Biol. Evol. 32, 2141-2148 (2015).
8. A. Force et al., Genetics 151, 1531-1545 (1999).
9. C. R. Baker, V. Hanson-Smith, A. D. Johnson, Science 342, 104-108 (2013).
10. I. Wapinski, A. Pfeffer, N. Friedman, A. Regev, Nature 449, 54-61 (2007).
11. GTEx Consortium, Science 348, 648-660 (2015).
12. T. Babak et al., Nat. Genet. 47, 544-549 (2015).
13. B. van de Geijn, G. McVicker, Y. Gilad, J. K. Pritchard, Nat. Methods 12, 1061-1063 (2015).
14. W. Fu et al., Nature 493, 216-220 (2013).
15. K. Peng et al., Nucleic Acids Res. 41, D553-D560 (2013).
16. E. W. Ganko, B. C. Meyers, T. J. Vision, Mol. Biol. Evol. 24, 2298-2309 (2007).
17. J. A. Bailey et al., Science 297, 1003-1007 (2002).
18. A. T. Ghanbarian, L. D. Hurst, Mol. Biol. Evol. 32, 1748-1766 (2015).
19. A. Battle et al., Genome Res. 24, 14-24 (2014).
20. T. Lappalainen et al., Nature 501, 506-511 (2013).
21. S. S. Rao et al., Cell 159, 1665-1680 (2014).
22. A. Feuerborn, P. R. Cook, Trends Genet. 31, 483-490 (2015).
23. D. Brawand et al., Nature 478, 343-348 (2011).
24. K. Y. Popadin et al., Am. J. Hum. Genet. 95, 660-674 (2014).