메뉴 건너뛰기




Volumn 47, Issue 5, 2015, Pages 544-549

Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE GENE MAPPING; CONFLICT; DEVELOPMENTAL STAGE; DYNAMICS; GENE; GENE EXPRESSION; GENOME IMPRINTING; HUMAN; NONHUMAN; ORTHOLOGY; PARENT; PRIORITY JOURNAL; ANIMAL; ANTIBODY SPECIFICITY; C57BL MOUSE; HUMAN GENOME; MOUSE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84929129485     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3274     Document Type: Article
Times cited : (158)

References (43)
  • 1
    • 0029587022 scopus 로고
    • Gametic imprinting in mammals
    • Barlow, D.P. Gametic imprinting in mammals. Science 270, 1610-1613 (1995
    • (1995) Science , vol.270 , pp. 1610-1613
    • Barlow, D.P.1
  • 3
    • 0025958320 scopus 로고
    • Genomic imprinting in mammalian development: A parental tug-of-war
    • Moore, T. & Haig, D. Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet. 7, 45-49 (1991
    • (1991) Trends Genet , vol.7 , pp. 45-49
    • Moore, T.1    Haig, D.2
  • 4
    • 84904501437 scopus 로고    scopus 로고
    • Non-conflict theories for the evolution of genomic imprinting
    • Spencer, H.G. & Clark, A.G. Non-conflict theories for the evolution of genomic imprinting. Heredity (Edinb.) 113, 112-118 (2014
    • (2014) Heredity (Edinb , vol.113 , pp. 112-118
    • Spencer, H.G.1    Clark, A.G.2
  • 5
    • 0038407464 scopus 로고    scopus 로고
    • What good is genomic imprinting: The function of parent-specific gene expression
    • Wilkins, J.F. & Haig, D. What good is genomic imprinting: the function of parent-specific gene expression. Nat. Rev. Genet. 4, 359-368 (2003
    • (2003) Nat. Rev. Genet , vol.4 , pp. 359-368
    • Wilkins, J.F.1    Haig, D.2
  • 7
    • 33845511629 scopus 로고    scopus 로고
    • A maternal-offspring coadaptation theory for the evolution of genomic imprinting
    • Wolf, J.B. & Hager, R. A maternal-offspring coadaptation theory for the evolution of genomic imprinting. PLoS Biol. 4, e380 (2006
    • (2006) PLoS Biol , vol.4 , pp. e380
    • Wolf, J.B.1    Hager, R.2
  • 8
    • 84867543614 scopus 로고    scopus 로고
    • Identification of imprinted loci by transcriptome sequencing
    • Babak, T. Identification of imprinted loci by transcriptome sequencing. Methods Mol. Biol. 925, 79-88 (2012
    • (2012) Methods Mol. Biol , vol.925 , pp. 79-88
    • Babak, T.1
  • 9
    • 56349112904 scopus 로고    scopus 로고
    • Global survey of genomic imprinting by transcriptome sequencing
    • Babak, T. et al. Global survey of genomic imprinting by transcriptome sequencing. Curr. Biol. 18, 1735-1741 (2008
    • (2008) Curr. Biol , vol.18 , pp. 1735-1741
    • Babak, T.1
  • 10
    • 57349168544 scopus 로고    scopus 로고
    • Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain
    • Wang, X. et al. Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS ONE 3, e3839 (2008
    • (2008) PLoS ONE , vol.3 , pp. e3839
    • Wang, X.1
  • 11
    • 84859256941 scopus 로고    scopus 로고
    • Critical evaluation of imprinted gene expression by RNA-Seq: A new perspective
    • DeVeale, B., Van Der Kooy, D. & Babak, T. Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective. PLoS Genet. 8, e1002600 (2012
    • (2012) PLoS Genet , vol.8 , pp. e1002600
    • Deveale, B.1    Van Der Kooy, D.2    Babak, T.3
  • 12
    • 77955299096 scopus 로고    scopus 로고
    • High-resolution analysis of parent-of-origin allelic expression in the mouse brain
    • Gregg, C. et al. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science 329, 643-648 (2010
    • (2010) Science , vol.329 , pp. 643-648
    • Gregg, C.1
  • 13
    • 84896703170 scopus 로고    scopus 로고
    • Characterization of the imprinting signature of mouse embryo fibroblasts by RNA deep sequencing
    • Tran, D.A., Bai, A.Y., Singh, P., Wu, X. & Szabo, P.E. Characterization of the imprinting signature of mouse embryo fibroblasts by RNA deep sequencing. Nucleic Acids Res. 42, 1772-1783 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. 1772-1783
    • Tran, D.A.1    Bai, A.Y.2    Singh, P.3    Wu, X.4    Szabo, P.E.5
  • 14
    • 84870009618 scopus 로고    scopus 로고
    • Site-specific silencing of regulatory elements as a mechanism of X inactivation
    • Calabrese, J.M. et al. Site-specific silencing of regulatory elements as a mechanism of X inactivation. Cell 151, 951-963 (2012
    • (2012) Cell , vol.151 , pp. 951-963
    • Calabrese, J.M.1
  • 15
    • 80052681300 scopus 로고    scopus 로고
    • A survey for novel imprinted genes in the mouse placenta by mRNA-seq
    • Wang, X., Soloway, P.D. & Clark, A.G. A survey for novel imprinted genes in the mouse placenta by mRNA-seq. Genetics 189, 109-122 (2011
    • (2011) Genetics , vol.189 , pp. 109-122
    • Wang, X.1    Soloway, P.D.2    Clark, A.G.3
  • 16
    • 47149114764 scopus 로고    scopus 로고
    • WAMIDEX: A web atlas of murine genomic imprinting and differential expression
    • Schulz, R. et al. WAMIDEX: a web atlas of murine genomic imprinting and differential expression. Epigenetics 3, 89-96 (2008
    • (2008) Epigenetics , vol.3 , pp. 89-96
    • Schulz, R.1
  • 17
    • 0035417355 scopus 로고    scopus 로고
    • And evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain
    • Kim, J., Bergmann, A., Wehri, E., Lu, X. & Stubbs, L. Imprinting and evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain. Genomics 77, 91-98 (2001
    • (2001) Genomics , vol.77 , pp. 91-98
    • Kim, J.1    Bergmann, A.2    Wehri, E.3    Lu, X.4    Imprinting, S.L.5
  • 19
    • 0035171016 scopus 로고    scopus 로고
    • The imprinted gene and parent-of-origin effect database
    • Morison, I.M., Paton, C.J. & Cleverley, S.D. The imprinted gene and parent-of-origin effect database. Nucleic Acids Res. 29, 275-276 (2001
    • (2001) Nucleic Acids Res , vol.29 , pp. 275-276
    • Morison, I.M.1    Paton, C.J.2    Cleverley, S.D.3
  • 20
    • 78649454993 scopus 로고    scopus 로고
    • A single postnatal injection of oxytocin rescues the lethal feeding behaviour in mouse newborns deficient for the imprinted Magel2 gene
    • Schaller, F. et al. A single postnatal injection of oxytocin rescues the lethal feeding behaviour in mouse newborns deficient for the imprinted Magel2 gene. Hum. Mol. Genet. 19, 4895-4905 (2010
    • (2010) Hum. Mol. Genet , vol.19 , pp. 4895-4905
    • Schaller, F.1
  • 21
    • 84878682420 scopus 로고    scopus 로고
    • GTEx Consortium The Genotype-Tissue Expression (GTEx) project
    • GTEx Consortium. The Genotype-Tissue Expression (GTEx) project. Nat. Genet. 45, 580-585 (2013
    • (2013) Nat. Genet , vol.45 , pp. 580-585
  • 22
    • 84860808258 scopus 로고    scopus 로고
    • Genomic landscape of human allele-specific DNA methylation
    • Fang, F. et al. Genomic landscape of human allele-specific DNA methylation. Proc. Natl. Acad. Sci. USA 109, 7332-7337 (2012
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 7332-7337
    • Fang, F.1
  • 23
    • 84907682976 scopus 로고    scopus 로고
    • Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants
    • Li, X. et al. Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. Am. J. Hum. Genet. 95, 245-256 (2014
    • (2014) Am. J. Hum. Genet , vol.95 , pp. 245-256
    • Li, X.1
  • 24
    • 84898758414 scopus 로고    scopus 로고
    • Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of the human imprintome and suggests a germline methylation independent establishment of imprinting
    • Court, F. et al. Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of the human imprintome and suggests a germline methylation independent establishment of imprinting. Genome Res. 24, 554-569 (2014
    • (2014) Genome Res , vol.24 , pp. 554-569
    • Court, F.1
  • 25
    • 53149111938 scopus 로고    scopus 로고
    • Parental modifiers, antisense transcripts and loss of imprinting
    • Wilkins, J.F. & Haig, D. Parental modifiers, antisense transcripts and loss of imprinting. Proc. Biol. Sci. 269, 1841-1846 (2002
    • (2002) Proc. Biol. Sci , vol.269 , pp. 1841-1846
    • Wilkins, J.F.1    Haig, D.2
  • 26
    • 0035934610 scopus 로고    scopus 로고
    • Genomic imprinting of two antagonistic loci
    • Wilkins, J.F. & Haig, D. Genomic imprinting of two antagonistic loci. Proc. Biol. Sci. 268, 1861-1867 (2001
    • (2001) Proc. Biol. Sci , vol.268 , pp. 1861-1867
    • Wilkins, J.F.1    Haig, D.2
  • 27
    • 35548982597 scopus 로고    scopus 로고
    • Inactivation of the mouse Magel2 gene results in growth abnormalities similar to Prader-Willi syndrome
    • Bischof, J.M., Stewart, C.L. & Wevrick, R. Inactivation of the mouse Magel2 gene results in growth abnormalities similar to Prader-Willi syndrome. Hum. Mol. Genet. 16, 2713-2719 (2007
    • (2007) Hum. Mol. Genet , vol.16 , pp. 2713-2719
    • Bischof, J.M.1    Stewart, C.L.2    Wevrick, R.3
  • 28
    • 77953707385 scopus 로고    scopus 로고
    • Brainstem mechanisms of amylin-induced anorexia
    • Potes, C.S. & Lutz, T.A. Brainstem mechanisms of amylin-induced anorexia. Physiol. Behav. 100, 511-518 (2010
    • (2010) Physiol. Behav , vol.100 , pp. 511-518
    • Potes, C.S.1    Lutz, T.A.2
  • 29
    • 0034743736 scopus 로고    scopus 로고
    • Non-imprinted Igf2r expression decreases growth and rescues the Tme mutation in mice
    • Wutz, A. et al. Non-imprinted Igf2r expression decreases growth and rescues the Tme mutation in mice. Development 128, 1881-1887 (2001
    • (2001) Development , vol.128 , pp. 1881-1887
    • Wutz, A.1
  • 30
    • 0242469001 scopus 로고    scopus 로고
    • Identification of Jade1, a gene encoding a PHD zinc finger protein, in a gene trap mutagenesis screen for genes involved in anteroposterior axis development
    • Tzouanacou, E., Tweedie, S. & Wilson, V. Identification of Jade1, a gene encoding a PHD zinc finger protein, in a gene trap mutagenesis screen for genes involved in anteroposterior axis development. Mol. Cell. Biol. 23, 8553-8562 (2003
    • (2003) Mol. Cell. Biol , vol.23 , pp. 8553-8562
    • Tzouanacou, E.1    Tweedie, S.2    Wilson, V.3
  • 31
    • 71549114836 scopus 로고    scopus 로고
    • A problem with the correlation coefficient as a measure of gene expression divergence
    • Pereira, V., Waxman, D. & Eyre-Walker, A. A problem with the correlation coefficient as a measure of gene expression divergence. Genetics 183, 1597-1600 (2009
    • (2009) Genetics , vol.183 , pp. 1597-1600
    • Pereira, V.1    Waxman, D.2    Eyre-Walker, A.3
  • 33
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie, W. et al. Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell 148, 816-831 (2012
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1
  • 34
    • 70350653808 scopus 로고    scopus 로고
    • Transcriptome analysis by strand-specific sequencing of complementary DNA
    • Parkhomchuk, D. et al. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37, e123 (2009
    • (2009) Nucleic Acids Res , vol.37 , pp. e123
    • Parkhomchuk, D.1
  • 35
    • 34548295740 scopus 로고    scopus 로고
    • A sequence-based variation map of 8.27 million SNPs in inbred mouse strains
    • Frazer, K.A. et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature 448, 1050-1053 (2007
    • (2007) Nature , vol.448 , pp. 1050-1053
    • Frazer, K.A.1
  • 36
    • 80052851950 scopus 로고    scopus 로고
    • Mouse genomic variation and its effect on phenotypes and gene regulation
    • Keane, T.M. et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477, 289-294 (2011
    • (2011) Nature , vol.477 , pp. 289-294
    • Keane, T.M.1
  • 38
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology the gene ontology consortium
    • Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29 (2000
    • (2000) Nat. Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 39
    • 84891753483 scopus 로고    scopus 로고
    • The Reactome pathway knowledgebase
    • Croft, D. et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 42, D472-D477 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. D472-D477
    • Croft, D.1
  • 40
    • 84855386495 scopus 로고    scopus 로고
    • BioMart Central Portal: An open database network for the biological community
    • bar041 2011
    • Guberman, J.M. et al. BioMart Central Portal: an open database network for the biological community. Database (Oxford ) 2011, bar041 (2011
    • (2011) Database (Oxford
    • Guberman, J.M.1
  • 41
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • Delaneau, O., Zagury, J.F. & Marchini, J. Improved whole-chromosome phasing for disease and population genetic studies. Nat. Methods 10, 5-6 (2013
    • (2013) Nat. Methods , vol.10 , pp. 5-6
    • Delaneau, O.1    Zagury, J.F.2    Marchini, J.3
  • 42
    • 84894651954 scopus 로고    scopus 로고
    • Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing
    • Zhang, R. et al. Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing. Nat. Methods 11, 51-54 (2014
    • (2014) Nat. Methods , vol.11 , pp. 51-54
    • Zhang, R.1
  • 43
    • 80054976678 scopus 로고    scopus 로고
    • The evolution of gene expression levels in mammalian organs
    • Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343-348 (2011
    • (2011) Nature , vol.478 , pp. 343-348
    • Brawand, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.