Zika virus complete genome from Salvador, Bahia, Brazil

Infection, Genetics and Evolution

Volumn 41, Issue , 2016, Pages 142-145

  Giovanetti, Marta ^a,b   Faria, Nuno Rodrigues ^c   Nunes, Marcio Roberto Teixeira ^d   de Vasconcelos, Janaina Mota ^d   Lourenço, José ^c   Rodrigues, Sueli Guerreiro ^d   Vianez, Joao Lidio ^d   da Silva, Sandro Patroca ^d   Lemos, Poliana Silva ^d   Tavares, Fernando Neto ^d   Martin, Darren Patrick ^e   do Rosário, Mateus Santana ^a,f   Siqueira, Isadora Cristina ^a   Ciccozzi, Massimo ^g   Pybus, Oliver G ^c   de Oliveira, Tulio ^h   Alcantara, Luiz Carlos ^a  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d INSTITUTO EVANDRO CHAGAS   (Brazil)

^e UNIVERSITY OF CAPE TOWN   (South Africa)

^f Hospital Santa Isabel   (Brazil)

^g National Institute of Healthy   (Italy)

^h UNIVERSITY OF KWAZULU NATAL   (South Africa)

Author keywords

Full length sequence; Phylogeny; Zika virus

Indexed keywords

ADULT; ARTHRALGIA; ARTICLE; BODY DISTRIBUTION; BRAZIL; CLINICAL ARTICLE; CONJUNCTIVAL HYPEREMIA; EPIDEMIC; FEMALE; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC TRAIT; GENETIC VARIABILITY; HUMAN; INFECTION CONTROL; JOINT SWELLING; MACULOPAPULAR RASH; MIDDLE AGED; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PRURITUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; VIRUS GENOME; VIRUS ISOLATION; VIRUS TRANSMISSION; ZIKA FEVER; ZIKA VIRUS; CASE REPORT; GENETICS; VIROLOGY;

BRAZIL; FEMALE; GENOME, VIRAL; HUMANS; MIDDLE AGED; PHYLOGENY; ZIKA VIRUS; ZIKA VIRUS INFECTION;

EID: 84971305506     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2016.03.030     Document Type: Article

References (18)

1. Duffy, M.R., Chen, T.H., Hancock, W.T., Powers, A.M., Kool, J.L., Lanciotti, R.S., Zika virus outbreak on Yap Island, Federated States of Micronesia. N. Engl. J. Med. 360 (2009), 2536–2543.
2. Enfissi, A., Zika virus genome from the Americas. Lancet 10015 (2016), 227–228.
3. Faye, O., Freire, C.C., Iamarino, A., Faye, O., de Oliveira, J.V., Diallo, M., Molecular evolution of Zika virus during its emergence in the 20(th) century. PLoS Negl. Trop. Dis. 9 (2014), 8–2636.
4. Grard, G., Zika virus in Gabon (Central Africa) – 2007: a new threat from Aedes albopictus?. PLoS Negl. Trop. Dis., 2014, 8–2681.
5. Guindon, S., Gascuel, O., A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003), 696–704.
6. Hall, T.A., BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999), 95–98.
7. Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P., Drummond, A., Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28 (2012), 1647–1649.
8. Kuno, G., Chang, G.J.J., Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses. Arch. Virol. 152 (2007), 687–696.
9. Lanciotti, R.S., Kosoy, O.L., Laven, J.J., Velez, J.O., Lambert, A.J., Johnson, A.J., Stanfield, S.M., Duffy, M.R., Genetic and serologic properties of Zika virus associated with an epidemic, Yap state, Micronesia, 2007. Emerg. Infect. Dis. 14 (2008), 1232–1239.
10. Mlakar, J., Korva, M., Tul, N., Popović M., Poljšak-Prijatelj, M., Mraz, J., Kolenc, M., Resman, Rus K., Vesnaver, Vipotnik T., Fabjan, Vodušek V., Vizjak, A., Pižem, J., Petrovec, M., Avšič Županc T., Zika virus associated with microcephaly. N. Engl. J. Med., 2016.
11. Mourão, M.P., Souza, Bastos M., Figuereido, R.P., Gimaque, J.B., Galusso, Edos S., Kramer, V.M., Mayaro fever in the city of Manaus, Brazil, 2007–2008. Vector Borne Zoonotic Dis. 2012 (2012), 12–42.
12. Oehler, E., Watrin, L., Larre, P., Leparc-Goffart, I., Lastere, S., Valour, F., Baudouin, L., Mallet, H.P., Musso, D., Ghawche, F., Zika virus infection complicated by Guillain-Barre syndrome — case report, French Polynesia, December 2013. Euro Surveill. 19 (2014), 9–20720.
13. Pond, S.L., Frost, S.D., Muse, S.V., HyPhy:hypothesis testing using phylogenies. Bioinformatics 21 (2005), 676–679.
14. Posada, D., Buckley, T.R., Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst. Biol. 53 (2004), 793–808.
15. Rodrigues, Faria N., Lourenço, J., Marques de Cerqueira, E., Maia de Lima, M., Pybus, O., Alcantara, L. Carlos Junior, Epidemiology of chikungunya virus in Bahia, Brazil, 2014–2015. PLoS Curr. Outbreaks, 2016.
16. Ventura, C.V., Maia, M., Bravo-Filho, V., Gois, A.L., Belfort, R.J., Zika virus in Brazil and macular atrophy in a child with microcephaly. Lancet, 16, 2016 (387-228).
17. Zamree, I., Drakes, N., Rohani, A., Lee, H.L., Sensitivity of Aedes albopictus C6/36 cells line for the detection and infectivity titration of dengue virus. Trop. Biomed. 22 (2005), 217–219.
18. Zanluca, C., de Melo, V.C., Mosimann, A.L., Dos Santos, G.I., Dos Santos, C.N., Luz, K., First report of autochthonous transmission of Zika virus in Brazil. Mem. Inst. Oswaldo Cruz 110 (2015), 569–572.