Fine mapping of the rosy apple aphid resistance locus Dp-fl on linkage group 8 of the apple cultivar ‘Florina’

Tree Genetics and Genomes

Volumn 12, Issue 3, 2016, Pages

  Pagliarani, G ^a   Dapena, E ^b   Minarro M ^b   Denance C ^c   Lespinasse, Y ^c   Rat Morris, E ^c   Troggio, M ^d   Durel, C E ^c   Tartarini, S ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b Servicio Regional de Investigación y Desarrollo Agroalimentario de Asturias   (Spain)

^c Universite d'Angers   (France)

^d RESEARCH AND INNOVATION CENTRE   (Italy)

Author keywords

Dysaphis plantaginea; Graphical genotyping; Malus domestica; SNP; TSP markers

Indexed keywords

EID: 84970996714     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-016-1015-x     Document Type: Article

References (49)

1. Alston FH, Briggs JB (1970) Inheritance of hypersensitivity to rosy apple aphid Dysaphis plantaginea in apple. Can J Genet Cytol 12:257–258
2. Angeli G, Simoni S (2006) Apple cultivars acceptance by Dysaphis plantaginea Passerini (Homoptera: Aphididae). J Pest Sci 79:175–179
3. Arnaoudov V, Kutinkova H (2006) Susceptibility of some apple cultivars to infestation by the rosy apple aphid (Dysaphis plantaginea Pass., Homoptera: Aphididae). J Fruit Ornam Plant Res 14:137–142
4. Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M (2014) Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh). PLoS One 9(10), e110377. doi:10.1371/journal.pone.0110377
5. Bianco L, Cestaro A, Linsmith G, Muranty H, Denancé C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg WE, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M (2016) Development and validation of the Axiom®Apple480K SNP genotyping array. Plant J. doi:10.1111/tpj.13145
6. Boyko EV, Smith CM, Thara VK, Bruno JM, Deng Y, Starkey SR, Klaahsen DL (2006) Molecular basis of plant gene expression during aphid invasion: wheat Pto- and Pti-like sequences are involved in interactions between wheat and Russian wheat aphid (Homoptera: Aphididae). J Econ Entomol 99:1430–1445
7. Briggs JB, Alston FH (1969) Sources of pest resistance in apple cultivars. Rep East Malling Res Stat 1968:159–162
8. Brown MW, Mathews CR (2007) Conservation biological control of rosy apple aphid, Dysaphis plantaginea (Passerini), in eastern North America. Environ Entomol 36:1131–1139
9. Brown A, Myers JH (2010) Temporal and spatial variability of rosy apple aphid Dysaphis plantaginea populations: is there a role of the alternate host plant Plantago major? Agric Forest Entomol 12:333–341
10. Bus VGM, Changné D, Bassett HCM, Bowatte D, Calenge F, Celton JM, Durel CE, Malone MT, Patocchi A, Ranatunga AC, Rikkerink EHA, Tustin DS, Zhou J, Gardiner SE (2008) Genome mapping of three major resistance genes to woolly apple aphid (Eriosoma lanigerum Hausm.). Tree Genet Genomes 4:223–236
11. Cevik V, King GJ (2002) High-resolution genetic analysis of the Sd-1 aphid resistance locus in Malus spp. Theor Appl Genet 105:346–354
12. Chagné D, Gasic K, Crowhurst RN, Han Y, Bassett HC, Bowatte DR, Lawrence TJ, Rikkerink EHA, Gardiner SE, Korban SS (2008) Development of a set of SNP markers present in expressed genes of the apple. Genomics 92:353–358
13. Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C (2012) Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS One 7(2), e31745. doi:10.1371/journal.pone.0031745
14. Chen QH, Han ZX, Jiang HY, Tian DC, Yang SH (2010) Strong positive selection rives rapid diversification of R-genes in Arabidopsis relatives. J Mol Evol 70:137–148
15. Dapena E, Miñarro M, Blazquez MD (2009) Evaluation of the resistance to the rosy apple aphid using a genetic marker. ISHS Acta Hortic 814:787–790. doi:10.17660/ActaHortic.2009.814.133
16. De Berardinis E, Baronio P, Baumgärtner J (1994) The effect of aphid (Dysaphis plantaginea Pass., Hom., dAphididae) feeding on apple fruit growth. Ecol Model 72:115–127
17. Durel CE, Laurens F, Fouillet A, Lespinasse Y (1998) Utilization of pedigree information to estimate genetic parameters from large unbalanced data sets in apple. Theor Appl Genet 96:1077–1085
18. Gessler C, Pertot I (2012) Vf scab resistance of Malus. Trees 26:95–108
19. Hayden MJ, Nguyen TM, Waterman A, McMichael GL, Chalmers KJ (2008) Application of multiplex-ready PCR for fluorescence-based SSR genotyping in barley and wheat. Mol Breeding 21:271–281
20. Hayden M, Tabone T, Mather D (2009) Development and assessment of simple PCR markers for SNP genotyping in barley. Theor Appl Genet 119:939–951
21. Hesler LS, Tharp CI (2005) Antibiosis and antixenosis to Rhopalosiphum padi among triticale accessions. Euphytica 143:153–160
22. Jänsch M, Broggini GAM, Weger J, Bus VGM, Gardiner SE, Bassett H, Patocchi A (2015) Identification of SNPs linked to eight apple disease resistance loci. Mol Breeding 35:45
23. Kaloshian I (2004) Gene-for-gene disease resistance: bridging insect pest and pathogen defense. J Chem Ecol 30:2419–2438
24. Liang W, Dondini L, De Franceschi P, Paris R, Sansavini S, Tartarini S (2015) Genetic diversity, population structure and construction of a core collection of apple cultivars from Italian germplasm. Plant Mol Biol Rep 33:458–473
25. Liebhard R, Gianfranceschi L, Koller B, Ryder CD, Tarchini R, van de Weg E, Gessler C (2002) Development and characterization of 140 new microsatellites in apple (Malus × domestica Borkh.). Mol Breed 10:217–241
26. Marchetti E, Civolani S, Leis M, Chicca M, Tjallingii WF, Pasqualini E, Baronio P (2009) Tissue location of resistance in apple to the rosy apple aphid established by electrical penetration graphs. Bull Insectology 62:203–208. ISSN 1721–8861
27. Meyers BC, Kaushik S, Nandety RS (2005) Evolving disease resistance genes. Curr Opin Plant Biol 8:129–134
28. Miñarro M, Dapena E (2004) Inheritance of the tolerance to the rosy apple aphid of the cv. ‘Florina’. Acta Hortic 663:261–264. doi:10.17660/ActaHortic.2004.663.42
29. Miñarro M, Dapena E (2007) Resistance of apple cultivars to Dysaphis plantaginea (Hemiptera: Aphididae): role of tree phenology in infestation avoidance. Environ Entomol 36:1206–1211
30. Miñarro M, Dapena E (2008) Tolerance of some scab-resistant apple cultivars to the rosy apple aphid, Dysaphis plantaginea. Crop Prot 27:391–395
31. Miñarro M, Hemptinne JL, Dapena E (2005) Colonization of apple orchards by predators of Dysaphis plantaginea: sequential arrival, response to prey abundance and consequences for biological control. BioControl 50:403–414
32. Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ et al (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141:147–166
33. Parisi L, Gros C, Combe F, Parveaud CE, Gomez C, Brun L (2013) Impact of a cultivar mixture on scab, powdery mildew and rosy aphid in an organic apple orchard. Crop Prot 43:207–212
34. Qubbaj T, Reineke A, Zebitz CPW (2005) Molecular interactions between rosy apple aphids, Dysaphis plantaginea, and resistant and susceptible cultivars of its primary host Malus domestica. Entomol Exp Appl 115:145–152
35. Rat-Morris E (1993) Development of the rosy apple aphid Dysaphis plantaginea Pass. on a tolerant apple cultivar ‘Florina’. Bulletin OILB/SROP 16:91–100
36. Rat-Morris E, Lespinasse Y (1995) Pommier: la résistance au puceron cendré associée à la résistance à la tavelure. Phytoma - La Défense des végétaux 471:15–17
37. Razmjou J, Changizi M, Golizadeh A, Khiavi HK, Asghar Fathi SA, Mottaghinia L (2014) Evaluation of resistance in seven apple cultivars to rosy apple aphid, Dysaphis plantaginea (Hemiptera: Aphididae) under greenhouse and field conditions. J Crop Prot 3:173–180
38. Rossi M, Goggin FL, Milligan SB, Klaoshian I, Ullman DE, Williamson VM (1998) The nematode resistance gene Mi of tomato confers resistance against the potato aphid. Proc Natl Acad Sci U S A 95:9750–9754
39. Salvi S, Micheletti D, Magnago P, Fontanari M, Viola R, Pindo M, Velasco R (2014) One-step reconstruction of multigeneration pedigree networks in apple (Malus × domestica Borkh.) and the parentage of Golden Delicious. Mol Breed 34:511–524. doi:10.1007/s11032-014-0054-y
40. Sandanayaka WRM, Bus VGM, Connolly P, Newcomb R (2003) Characteristics associated with woolly apple aphid Eriosoma lanigerum, resistance of three apple rootstocks. Entomol Exp Appl 109:63–67
41. Sandanayaka WRM, Bus VGM, Connolly P (2005) Mechanisms of woolly aphid [Eriosoma lanigerum (Hausm.)] resistance in apple. J Appl Entomol 129:534–541
42. Smith CM, Boyko EV (2007) The molecular bases of plant resistance and defense responses to aphid feeding: current status. Entomol Exp Appl 122:1–16
43. Stoeckli S, Mody K, Gessler C, Patocchi A, Jermini M, Dorn S (2008) QTL analysis for aphid resistance and growth traits in apple. Tree Genet Genomes 4:833–847
44. Tabone T, Mather DE, Hayden MJ (2009) Temperature Switch PCR (TSP): robust assay design for reliable amplification and genotyping of SNPs. BMC Genomics 10:580
45. Van Ooijen J (2006) JoinMap 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma B.V, Wageningen, Netherlands
46. Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A et al (2010) The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 42:833–839
47. Wang A, Aldwinckle H, Forsline P, Main D, Fazio G, Brown S, Xu K (2012) EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, the progenitor species of domestic apple. Mol Breed 29:379–397. doi:10.1007/s11032-011-9554-1
48. Young ND, Tanksley SD (1989) Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theor Appl Genet 77:95–101
49. Zhong Y, Yin H, Sargent DJ, Malnoy M, Cheng ZM (2015) Species-specific duplications driving the recent expansion of NBS-LRR genes in five Rosaceae species. BMC Genomics 16:77. doi:10.1186/s12864-015-1291-0