메뉴 건너뛰기




Volumn 18, Issue 1, 2016, Pages

Germline APOBEC3B deletion is associated with breast cancer risk in an Asian multi-ethnic cohort and with immune cell presentation

Author keywords

APOBEC3B; Asian; Breast cancer; Breast cancer risk; Immune response

Indexed keywords

ADULT; APOBEC3B GENE; ARTICLE; BREAST CANCER; CANCER RISK; CELL SUBPOPULATION; CHINESE; CLINICAL FEATURE; CONTROLLED STUDY; ETHNICITY; FEMALE; GENE DELETION; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENETIC ASSOCIATION; GERM LINE; HUMAN; HUMAN CELL; IMMUNOCOMPETENT CELL; INDIAN; MAJOR CLINICAL STUDY; MALAY (PEOPLE); MARKER GENE; MICROARRAY ANALYSIS; TUMOR ASSOCIATED LEUKOCYTE; ANTIGEN PRESENTATION; BREAST NEOPLASMS; CASE CONTROL STUDY; COPY NUMBER VARIATION; CROSS-SECTIONAL STUDY; ETHNIC GROUP; ETHNOLOGY; GENE EXPRESSION; GENETIC PREDISPOSITION; GENETICS; GERMLINE MUTATION; HETEROZYGOTE; IMMUNITY; IMMUNOLOGY; MALAYSIA; METABOLISM; MIDDLE AGED; PATHOLOGY; RISK;

EID: 84969988140     PISSN: 14655411     EISSN: 1465542X     Source Type: Journal    
DOI: 10.1186/s13058-016-0717-1     Document Type: Article
Times cited : (38)

References (28)
  • 1
    • 84882417741 scopus 로고    scopus 로고
    • The APOBEC3 family of retroelement restriction factors
    • Refsland EW, Harris RS. The APOBEC3 family of retroelement restriction factors. Curr Top Microbiol Immunol. 2013;371:1-27.
    • (2013) Curr Top Microbiol Immunol. , vol.371 , pp. 1-27
    • Refsland, E.W.1    Harris, R.S.2
  • 3
    • 84883356320 scopus 로고    scopus 로고
    • Evidence for APOBEC3B mutagenesis in multiple human cancers
    • Burns MB, Temiz NA, Harris RS. Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat Genet. 2013;45(9):977-83.
    • (2013) Nat Genet , vol.45 , Issue.9 , pp. 977-983
    • Burns, M.B.1    Temiz, N.A.2    Harris, R.S.3
  • 6
    • 34247623286 scopus 로고    scopus 로고
    • Population stratification of a common APOBEC gene deletion polymorphism
    • Kidd JM, Newman TL, Tuzun E, Kaul R, Eichler EE. Population stratification of a common APOBEC gene deletion polymorphism. PLoS Genet. 2007;3(4):e63.
    • (2007) PLoS Genet , vol.3 , Issue.4 , pp. e63
    • Kidd, J.M.1    Newman, T.L.2    Tuzun, E.3    Kaul, R.4    Eichler, E.E.5
  • 7
    • 84876585078 scopus 로고    scopus 로고
    • A common deletion in the APOBEC3 genes and breast cancer risk
    • Long J, Delahanty RJ, Li G, Gao YT, Lu W, Cai Q, et al. A common deletion in the APOBEC3 genes and breast cancer risk. J Natl Cancer Inst. 2013;105(8):573-9.
    • (2013) J Natl Cancer Inst , vol.105 , Issue.8 , pp. 573-579
    • Long, J.1    Delahanty, R.J.2    Li, G.3    Gao, Y.T.4    Lu, W.5    Cai, Q.6
  • 8
    • 84885093727 scopus 로고    scopus 로고
    • APOBEC3 deletion polymorphism is associated with breast cancer risk among women of European ancestry
    • Xuan D, Li G, Cai Q, Deming-Halverson S, Shrubsole MJ, Shu XO, et al. APOBEC3 deletion polymorphism is associated with breast cancer risk among women of European ancestry. Carcinogenesis. 2013;34(10):2240-3.
    • (2013) Carcinogenesis , vol.34 , Issue.10 , pp. 2240-2243
    • Xuan, D.1    Li, G.2    Cai, Q.3    Deming-Halverson, S.4    Shrubsole, M.J.5    Shu, X.O.6
  • 9
    • 84899645475 scopus 로고    scopus 로고
    • Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer
    • Nik-Zainal S, Wedge DC, Alexandrov LB, Petljak M, Butler AP, Bolli N, et al. Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer. Nat Genet. 2014;46(5):487-91.
    • (2014) Nat Genet , vol.46 , Issue.5 , pp. 487-491
    • Nik-Zainal, S.1    Wedge, D.C.2    Alexandrov, L.B.3    Petljak, M.4    Butler, A.P.5    Bolli, N.6
  • 10
    • 84924184255 scopus 로고    scopus 로고
    • APOBEC3B expression in breast cancer reflects cellular proliferation, while a deletion polymorphism is associated with immune activation
    • Cescon DW, Haibe-Kains B, Mak TW. APOBEC3B expression in breast cancer reflects cellular proliferation, while a deletion polymorphism is associated with immune activation. Proc Natl Acad Sci U S A. 2015;112(9):2841-6.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , Issue.9 , pp. 2841-2846
    • Cescon, D.W.1    Haibe-Kains, B.2    Mak, T.W.3
  • 11
    • 84882575643 scopus 로고    scopus 로고
    • Prevalence of PALB2 mutations in breast cancer patients in multi-ethnic Asian population in Malaysia and Singapore
    • Phuah SY, Lee SY, Kang P, Kang IN, Yoon SY, Thong MK, et al. Prevalence of PALB2 mutations in breast cancer patients in multi-ethnic Asian population in Malaysia and Singapore. PLoS One. 2013;8(8):e73638.
    • (2013) PLoS One , vol.8 , Issue.8 , pp. e73638
    • Phuah, S.Y.1    Lee, S.Y.2    Kang, P.3    Kang, I.N.4    Yoon, S.Y.5    Thong, M.K.6
  • 12
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A. 2001;98(1):31-6.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 13
  • 14
    • 84963641621 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • Vienna: R Foundation for Statistical Computing;. (Accessed on 7 July 2015).
    • R Core Team. R: A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing; 2014. http://www.R-project.org/. (Accessed on 7 July 2015).
    • (2014)
  • 15
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545-50.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.43 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5    Gillette, M.A.6
  • 16
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004; 3:Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 17
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25(1):25-9.
    • (2000) Nat Genet. , vol.25 , Issue.1 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5    Cherry, J.M.6
  • 19
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001;29(4):365-71.
    • (2001) Nat Genet , vol.29 , Issue.4 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5    Stoeckert, C.6
  • 20
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas N. Comprehensive molecular portraits of human breast tumours. Nature. 2012;490(7418):61-70.
    • (2012) Nature , vol.490 , Issue.7418 , pp. 61-70
  • 21
    • 84861527388 scopus 로고    scopus 로고
    • The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
    • Curtis C, Shah SP, Chin SF, Turashvili G, Rueda OM, Dunning MJ, et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature. 2012;486(7403):346-52.
    • (2012) Nature , vol.486 , Issue.7403 , pp. 346-352
    • Curtis, C.1    Shah, S.P.2    Chin, S.F.3    Turashvili, G.4    Rueda, O.M.5    Dunning, M.J.6
  • 22
    • 84875740314 scopus 로고    scopus 로고
    • Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
    • Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal. 2013;6(269):l1.
    • (2013) Sci Signal , vol.6 , Issue.269 , pp. l1
    • Gao, J.1    Aksoy, B.A.2    Dogrusoz, U.3    Dresdner, G.4    Gross, B.5    Sumer, S.O.6
  • 24
    • 84928927858 scopus 로고    scopus 로고
    • Robust enumeration of cell subsets from tissue expression profiles
    • Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, et al. Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. 2015;12(5):453-7.
    • (2015) Nat Methods , vol.12 , Issue.5 , pp. 453-457
    • Newman, A.M.1    Liu, C.L.2    Green, M.R.3    Gentles, A.J.4    Feng, W.5    Xu, Y.6
  • 25
    • 84922532539 scopus 로고    scopus 로고
    • Ethnic differences in mammographic densities: an Asian cross-sectional study
    • Mariapun S, Li J, Yip CH, Taib NA, Teo SH. Ethnic differences in mammographic densities: an Asian cross-sectional study. PLoS One. 2015;10(2):e0117568.
    • (2015) PLoS One , vol.10 , Issue.2 , pp. e0117568
    • Mariapun, S.1    Li, J.2    Yip, C.H.3    Taib, N.A.4    Teo, S.H.5
  • 26
    • 84923309215 scopus 로고    scopus 로고
    • A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage
    • Caval V, Suspene R, Shapira M, Vartanian JP, Wain-Hobson S. A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage. Nat Commun. 2014;5:5129.
    • (2014) Nat Commun. , vol.5 , pp. 5129
    • Caval, V.1    Suspene, R.2    Shapira, M.3    Vartanian, J.P.4    Wain-Hobson, S.5
  • 27
    • 84940574759 scopus 로고    scopus 로고
    • An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
    • Chan K, Roberts SA, Klimczak LJ, Sterling JF, Saini N, Malc EP, et al. An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers. Nat Genet. 2015;47(9):1067-72.
    • (2015) Nat Genet , vol.47 , Issue.9 , pp. 1067-1072
    • Chan, K.1    Roberts, S.A.2    Klimczak, L.J.3    Sterling, J.F.4    Saini, N.5    Malc, E.P.6
  • 28
    • 84943617416 scopus 로고    scopus 로고
    • Natural and therapy-induced immunosurveillance in breast cancer
    • Kroemer G, Senovilla L, Galluzzi L, Andre F, Zitvogel L. Natural and therapy-induced immunosurveillance in breast cancer. Nat Med. 2015;21(10):1128-38.
    • (2015) Nat Med , vol.21 , Issue.10 , pp. 1128-1138
    • Kroemer, G.1    Senovilla, L.2    Galluzzi, L.3    Andre, F.4    Zitvogel, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.