-
1
-
-
0033152966
-
Suppression of SHP-2 and Erk signaling promotes self-renewal of mouse embryonic stem cells
-
Burdon T, Stracey C, Chambers I, Nichols J, Smith A. 1999 Suppression of SHP-2 and Erk signaling promotes self-renewal of mouse embryonic stem cells. Dev. Biol. 210, 30-43. (doi:10.1006/dbio. 1999.9265)
-
(1999)
Dev. Biol.
, vol.210
, pp. 30-43
-
-
Burdon, T.1
Stracey, C.2
Chambers, I.3
Nichols, J.4
Smith, A.5
-
2
-
-
34548587064
-
FGF stimulation of the Erk1/2 signalling cascade triggers transition of pluripotent embryonic stem cells from selfrenewal to lineage commitment
-
Kunath T, Saba-El-Leil MK, Almousailleakh M, Wray J, Meloche S, Smith A. 2007 FGF stimulation of the Erk1/2 signalling cascade triggers transition of pluripotent embryonic stem cells from selfrenewal to lineage commitment. Development 134, 2895-2902. (doi:10.1242/dev.02880)
-
(2007)
Development
, vol.134
, pp. 2895-2902
-
-
Kunath, T.1
Saba-El-Leil, M.K.2
Almousailleakh, M.3
Wray, J.4
Meloche, S.5
Smith, A.6
-
3
-
-
34548596749
-
A discrete period of FGF-induced Erk1/2 signalling is required for vertebrate neural specification
-
Stavridis MP, Lunn JS, Collins BJ, Storey KG. 2007 A discrete period of FGF-induced Erk1/2 signalling is required for vertebrate neural specification. Development 134, 2889-2894. (doi:10.1242/dev.02858)
-
(2007)
Development
, vol.134
, pp. 2889-2894
-
-
Stavridis, M.P.1
Lunn, J.S.2
Collins, B.J.3
Storey, K.G.4
-
4
-
-
84866443845
-
Imaging, quantification and visualization of spatiotemporal patterning in mESC colonies under different culture conditions
-
Scherf N, Herberg M, Thierbach K, Zerjatke T, Kalkan T, Humphreys P, Smith A, Glauche I, Roeder I. 2012 Imaging, quantification and visualization of spatiotemporal patterning in mESC colonies under different culture conditions. Bioinformatics 28, i556-i561. (doi:10.1093/bioinformatics/bts404)
-
(2012)
Bioinformatics
, vol.28
, pp. i556-i561
-
-
Scherf, N.1
Herberg, M.2
Thierbach, K.3
Zerjatke, T.4
Kalkan, T.5
Humphreys, P.6
Smith, A.7
Glauche, I.8
Roeder, I.9
-
5
-
-
37549002155
-
Nanog safeguards pluripotency and mediates germline development
-
Chambers I et al. 2007 Nanog safeguards pluripotency and mediates germline development. Nature 450, 1230-1234. (doi:10.1038/nature06403)
-
(2007)
Nature
, vol.450
, pp. 1230-1234
-
-
Chambers, I.1
-
6
-
-
35348816062
-
A heterogeneous expression pattern for Nanog in embryonic stem cells
-
Singh AM, Hamazaki T, Hankowski KE, Terada N. 2007 A heterogeneous expression pattern for Nanog in embryonic stem cells. Stem Cells 25, 2534-2542. (doi:10.1634/stemcells. 2007-0126)
-
(2007)
Stem Cells
, vol.25
, pp. 2534-2542
-
-
Singh, A.M.1
Hamazaki, T.2
Hankowski, K.E.3
Terada, N.4
-
7
-
-
53049092465
-
Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
-
Hayashi K, Lopes SM, Tang F, Surani MA. 2008 Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states. Cell Stem Cell 3, 391-401. (doi:10.1016/j.stem.2008.07.027)
-
(2008)
Cell Stem Cell
, vol.3
, pp. 391-401
-
-
Hayashi, K.1
Lopes, S.M.2
Tang, F.3
Surani, M.A.4
-
8
-
-
42149192008
-
Identification and characterization of subpopulations in undifferentiated ES cell culture
-
Toyooka Y, Shimosato D, Murakami K, Takahashi K, Niwa H. 2008 Identification and characterization of subpopulations in undifferentiated ES cell culture. Development 135, 909-918. (doi:10.1242/dev. 017400)
-
(2008)
Development
, vol.135
, pp. 909-918
-
-
Toyooka, Y.1
Shimosato, D.2
Murakami, K.3
Takahashi, K.4
Niwa, H.5
-
9
-
-
77952915049
-
Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript
-
Canham MA, Sharov AA, Ko MS, Brickman JM. 2010 Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript. PLoS Biol. 8, e1000379. (doi:10.1371/journal.pbio.1000379)
-
(2010)
PLoS Biol.
, vol.8
, pp. e1000379
-
-
Canham, M.A.1
Sharov, A.A.2
Ko, M.S.3
Brickman, J.M.4
-
10
-
-
0037806031
-
The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells
-
Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M, Yamanaka S. 2003 The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113, 631-642. (doi:10.1016/S0092-8674(03)00393-3)
-
(2003)
Cell
, vol.113
, pp. 631-642
-
-
Mitsui, K.1
Tokuzawa, Y.2
Itoh, H.3
Segawa, K.4
Murakami, M.5
Takahashi, K.6
Maruyama, M.7
Maeda, M.8
Yamanaka, S.9
-
11
-
-
0038143611
-
Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells
-
Chambers I, Colby D, Robertson M, Nichols J, Lee S, Tweedie S, Smith A. 2003 Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113, 643-655. (doi:10.1016/S0092-8674(03)00392-1)
-
(2003)
Cell
, vol.113
, pp. 643-655
-
-
Chambers, I.1
Colby, D.2
Robertson, M.3
Nichols, J.4
Lee, S.5
Tweedie, S.6
Smith, A.7
-
12
-
-
68749110887
-
Nanog is the gateway to the pluripotent ground state
-
Silva J et al. 2009 Nanog is the gateway to the pluripotent ground state. Cell 138, 722-737. (doi:10.1016/j.cell.2009.07.039)
-
(2009)
Cell
, vol.138
, pp. 722-737
-
-
Silva, J.1
-
13
-
-
68049139696
-
Regulated fluctuations in Nanog expression mediate cell fate decisions in embryonic stem cells
-
Kalmar T, Lim C, Hayward P, Muñoz-Descalzo S, Nichols J, Garcia-Ojalvo J, Martinez Arias A. 2009 Regulated fluctuations in Nanog expression mediate cell fate decisions in embryonic stem cells. PLoS Biol. 7, e1000149. (doi:10.1371/journal.pbio. 1000149)
-
(2009)
PLoS Biol.
, vol.7
, pp. e1000149
-
-
Kalmar, T.1
Lim, C.2
Hayward, P.3
Muñoz-Descalzo, S.4
Nichols, J.5
Garcia-Ojalvo, J.6
Martinez Arias, A.7
-
14
-
-
84875117561
-
Generation and characterization of a novel mouse embryonic stem cell line with a dynamic reporter of Nanog expression
-
Abranches E, Bekman E, Henrique D. 2013 Generation and characterization of a novel mouse embryonic stem cell line with a dynamic reporter of Nanog expression. PLoS ONE 8, e59928. (doi:10.1371/journal.pone.0059928)
-
(2013)
PLoS ONE
, vol.8
, pp. e59928
-
-
Abranches, E.1
Bekman, E.2
Henrique, D.3
-
15
-
-
84904460344
-
Dynamic heterogeneity and DNA methylation in embryonic stem cells
-
Singer ZS, Yong J, Tischler J, Hackett JA, Altinok A, Surani MA, Cai L, Elowitz MB. 2014 Dynamic heterogeneity and DNA methylation in embryonic stem cells. Mol. Cell 55, 319-331. (doi:10.1016/j. molcel.2014.06.029)
-
(2014)
Mol. Cell
, vol.55
, pp. 319-331
-
-
Singer, Z.S.1
Yong, J.2
Tischler, J.3
Hackett, J.A.4
Altinok, A.5
Surani, M.A.6
Cai, L.7
Elowitz, M.B.8
-
16
-
-
84904012047
-
Stochastic Nanog fluctuations allow mouse embryonic stem cells to explore pluripotency
-
Abranches E, Guedes AM, Moravec M, Maamar H, Svoboda P, Raj A, Henrique D. 2014 Stochastic Nanog fluctuations allow mouse embryonic stem cells to explore pluripotency. Development 141, 2770-2779. (doi:10.1242/dev. 108910)
-
(2014)
Development
, vol.141
, pp. 2770-2779
-
-
Abranches, E.1
Guedes, A.M.2
Moravec, M.3
Maamar, H.4
Svoboda, P.5
Raj, A.6
Henrique, D.7
-
17
-
-
84942981648
-
Network plasticity of pluripotency transcription factors in embryonic stem cells
-
Filipczyk A et al. 2015 Network plasticity of pluripotency transcription factors in embryonic stem cells. Nat. Cell Biol. 17, 1235-1246. (doi:10.1038/ncb3237)
-
(2015)
Nat. Cell Biol.
, vol.17
, pp. 1235-1246
-
-
Filipczyk, A.1
-
18
-
-
39149122855
-
Capturing pluripotency
-
Silva J, Smith A. 2008 Capturing pluripotency. Cell 132, 532-536. (doi:10.1016/j.cell.2008.02.006)
-
(2008)
Cell
, vol.132
, pp. 532-536
-
-
Silva, J.1
Smith, A.2
-
19
-
-
84894876824
-
A competitive protein interaction network buffers OCT4-mediated differentiation to promote pluripotency in embryonic stem cells
-
Muñoz-Descalzo S, Rue P, Faunes F, Hayward P, Jakt LM, Balayo T, Garcia-Ojalvo J, Martinez Arias A. 2013 A competitive protein interaction network buffers OCT4-mediated differentiation to promote pluripotency in embryonic stem cells. Mol. Syst. Biol 9, 694. (doi:10.1038/msb.2013.49)
-
(2013)
Mol. Syst. Biol
, vol.9
, pp. 694
-
-
Muñoz-Descalzo, S.1
Rue, P.2
Faunes, F.3
Hayward, P.4
Jakt, L.M.5
Balayo, T.6
Garcia-Ojalvo, J.7
Martinez Arias, A.8
-
20
-
-
33747679358
-
Regulation of the pluripotency marker Rex-1 by Nanog and SOX2
-
Shi W, Wang H, Pan G, Geng Y, Guo Y, Pei D. 2006 Regulation of the pluripotency marker Rex-1 by Nanog and SOX2. J. Biol. Chem., 281 23 319-23 325. (doi:10.1074/jbc.M601811200)
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 23319-23325
-
-
Shi, W.1
Wang, H.2
Pan, G.3
Geng, Y.4
Guo, Y.5
Pei, D.6
-
21
-
-
84860351082
-
The transcriptional and epigenomic foundations of ground state pluripotency
-
Marks H et al. 2012 The transcriptional and epigenomic foundations of ground state pluripotency. Cell 149, 590-604. (doi:10.1016/j. cell.2012.03.026)
-
(2012)
Cell
, vol.149
, pp. 590-604
-
-
Marks, H.1
-
22
-
-
84898619040
-
A modelbased analysis of culture-dependent phenotypes of mESCs
-
Herberg M, Kalkan T, Glauche I, Smith A, Roeder I. 2014 A modelbased analysis of culture-dependent phenotypes of mESCs. PLoS ONE 9, e92496. (doi:10.1371/journal.pone.0092496)
-
(2014)
PLoS ONE
, vol.9
, pp. e92496
-
-
Herberg, M.1
Kalkan, T.2
Glauche, I.3
Smith, A.4
Roeder, I.5
-
23
-
-
84929945359
-
Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies
-
Herberg M, Zerjatke T, de Back W, Glauche I, Roeder I. 2015 Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies. Cytometry Part A 87, 481-490. (doi:10.1002/cyto.a.22598)
-
(2015)
Cytometry Part A
, vol.87
, pp. 481-490
-
-
Herberg, M.1
Zerjatke, T.2
De Back, W.3
Glauche, I.4
Roeder, I.5
-
24
-
-
84908247678
-
Mapping the route from naive pluripotency to lineage specification
-
Kalkan T, Smith A. 2014 Mapping the route from naive pluripotency to lineage specification. Phil. Trans. R. Soc. B 369, 20130540. (doi:10.1098/rstb. 2013.0540)
-
(2014)
Phil. Trans. R. Soc. B
, vol.369
, pp. 20130540
-
-
Kalkan, T.1
Smith, A.2
-
25
-
-
84901473732
-
Transcription factor heterogeneity in pluripotent stem cells: A stochastic advantage
-
Torres-Padilla ME, Chambers I. 2014 Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage. Development 141, 2173-2181. (doi:10.1242/dev. 102624)
-
(2014)
Development
, vol.141
, pp. 2173-2181
-
-
Torres-Padilla, M.E.1
Chambers, I.2
-
26
-
-
84936141331
-
Computational modelling of embryonic stem cell fate control
-
Herberg M, Roeder I. 2015 Computational modelling of embryonic stem cell fate control. Development 142. (doi:10.1242/dev. 116343)
-
(2015)
Development
, vol.142
-
-
Herberg, M.1
Roeder, I.2
-
27
-
-
77955288571
-
Nanog variability and pluripotency regulation of embryonic stem cells-insights from a mathematical model analysis
-
Glauche I, Herberg M, Roeder I. 2010 Nanog variability and pluripotency regulation of embryonic stem cells-insights from a mathematical model analysis. PLoS ONE 5, e11238. (doi:10.1371/journal.pone.0011238)
-
(2010)
PLoS ONE
, vol.5
, pp. e11238
-
-
Glauche, I.1
Herberg, M.2
Roeder, I.3
-
28
-
-
79959950773
-
Inhibition of glycogen synthase kinase-3 alleviates TCF3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
-
Wray J, Kalkan T, Gomez-Lopez S, Eckardt D, Cook A, Kemler R, Smith A. 2011 Inhibition of glycogen synthase kinase-3 alleviates TCF3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat. Cell Biol. 13, 838-845. (doi:10.1038/ncb2267)
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 838-845
-
-
Wray, J.1
Kalkan, T.2
Gomez-Lopez, S.3
Eckardt, D.4
Cook, A.5
Kemler, R.6
Smith, A.7
-
29
-
-
83455229884
-
Primitive endoderm differentiates via a three-step mechanism involving Nanog and RTK signaling
-
Frankenberg S, Gerbe F, Bessonnard S, Belville C, Pouchin P, Bardot O, Chazaud C. 2011 Primitive endoderm differentiates via a three-step mechanism involving Nanog and RTK signaling. Dev. Cell 21, 1005-1013. (doi:10.1016/j.devcel.2011.10.019)
-
(2011)
Dev. Cell
, vol.21
, pp. 1005-1013
-
-
Frankenberg, S.1
Gerbe, F.2
Bessonnard, S.3
Belville, C.4
Pouchin, P.5
Bardot, O.6
Chazaud, C.7
-
30
-
-
33749633094
-
The Grb2/Mek pathway represses Nanog in murine embryonic stem cells
-
Hamazaki T, Kehoe SM, Nakano T, Terada N. 2006 The Grb2/Mek pathway represses Nanog in murine embryonic stem cells. Mol. Cell Biol. 26, 7539-7549. (doi:10.1128/MCB.00508-06)
-
(2006)
Mol. Cell Biol.
, vol.26
, pp. 7539-7549
-
-
Hamazaki, T.1
Kehoe, S.M.2
Nakano, T.3
Terada, N.4
-
31
-
-
0030820931
-
Synergistic activation of the fibroblast growth factor 4 enhancer by SOX2 and OCT-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites
-
Ambrosetti DC, Basilico C, Dailey L. 1997 Synergistic activation of the fibroblast growth factor 4 enhancer by SOX2 and OCT-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites. Mol. Cell. Biol. 17, 6321-6329. (doi:10.1128/MCB.17.11.6321)
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 6321-6329
-
-
Ambrosetti, D.C.1
Basilico, C.2
Dailey, L.3
-
32
-
-
0032582513
-
Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor OCT4
-
Nichols J, Zevnik B, Anastassiadis K, Niwa H, Klewe-Nebenius D, Chambers I, Scholer H, Smith A. 1998 Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor OCT4. Cell 95, 379-391. (doi:10.1016/S0092-8674(00)81769-9)
-
(1998)
Cell
, vol.95
, pp. 379-391
-
-
Nichols, J.1
Zevnik, B.2
Anastassiadis, K.3
Niwa, H.4
Klewe-Nebenius, D.5
Chambers, I.6
Scholer, H.7
Smith, A.8
-
33
-
-
21644434480
-
Transcriptional regulation of Nanog by OCT4 and SOX2
-
Rodda DJ, Chew JL, Lim LH, Loh YH, Wang B, Ng HH, Robson P. 2005 Transcriptional regulation of Nanog by OCT4 and SOX2. J. Biol. Chem., 280 24 731-24 737. (doi:10.1074/jbc.M502573200)
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 24731-24737
-
-
Rodda, D.J.1
Chew, J.L.2
Lim, L.H.3
Loh, Y.H.4
Wang, B.5
Ng, H.H.6
Robson, P.7
-
34
-
-
84908550638
-
Elucidating functional heterogeneity in haematopoietic progenitor cells: A combined experimental and modelling approach
-
Bach E, Zerjatke T, Herklotz M, Scherf N, Niederwieser D, Roeder I, Pompe T, Cross M, Glauche I. 2014 Elucidating functional heterogeneity in haematopoietic progenitor cells: a combined experimental and modelling approach. Exp. Hematol. 42, 826-837. (doi:10.1016/j.exphem. 2014.05.011)
-
(2014)
Exp. Hematol.
, vol.42
, pp. 826-837
-
-
Bach, E.1
Zerjatke, T.2
Herklotz, M.3
Scherf, N.4
Niederwieser, D.5
Roeder, I.6
Pompe, T.7
Cross, M.8
Glauche, I.9
-
35
-
-
84964927929
-
-
Vienna, Austria: R Foundation for Statistical Computing
-
R Core Team. 2015 R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. See https://www.R-project.org.
-
(2015)
R: A Language and Environment for Statistical Computing
-
-
-
36
-
-
77954630744
-
The ground state of pluripotency
-
Wray J, Kalkan T, Smith AG. 2010 The ground state of pluripotency. Biochem. Soc. Trans. 38, 1027-1032. (doi:10.1042/BST0381027)
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 1027-1032
-
-
Wray, J.1
Kalkan, T.2
Smith, A.G.3
-
37
-
-
62449321541
-
A novel view on stem cell development: Analyzing the shape of cellular genealogies
-
Glauche I, Lorenz R, Hasenclever D, Roeder I. 2009 A novel view on stem cell development: analyzing the shape of cellular genealogies. Cell Prolif. 42, 248-263. (doi:10.1111/j.1365-2184.2009.00586.x)
-
(2009)
Cell Prolif.
, vol.42
, pp. 248-263
-
-
Glauche, I.1
Lorenz, R.2
Hasenclever, D.3
Roeder, I.4
-
38
-
-
84855594032
-
On the symmetry of siblings: Automated single-cell tracking to quantify the behavior of hematopoietic stem cells in a biomimetic setup
-
Scherf N, Franke K, Glauche I, Kurth I, Bornhauser M, Werner C, Pompe T, Roeder I. 2012 On the symmetry of siblings: automated single-cell tracking to quantify the behavior of hematopoietic stem cells in a biomimetic setup. Exp. Hematol. 40, 119-130. (doi:10.1016/j.exphem.2011.10.009)
-
(2012)
Exp. Hematol.
, vol.40
, pp. 119-130
-
-
Scherf, N.1
Franke, K.2
Glauche, I.3
Kurth, I.4
Bornhauser, M.5
Werner, C.6
Pompe, T.7
Roeder, I.8
-
39
-
-
30444461346
-
Cell cycle control of embryonic stem cells
-
White J, Dalton S. 2005 Cell cycle control of embryonic stem cells. Stem Cell Rev. 1, 131-138. (doi:10.1385/SCR:1:2:131)
-
(2005)
Stem Cell Rev.
, vol.1
, pp. 131-138
-
-
White, J.1
Dalton, S.2
-
40
-
-
84871550786
-
Predicting stem cell fate changes by differential cell cycle progression patterns
-
Roccio M, Schmitter D, Knobloch M, Okawa Y, Sage D, Lutolf MP. 2013 Predicting stem cell fate changes by differential cell cycle progression patterns. Development 140, 459-470. (doi:10.1242/dev. 086215)
-
(2013)
Development
, vol.140
, pp. 459-470
-
-
Roccio, M.1
Schmitter, D.2
Knobloch, M.3
Okawa, Y.4
Sage, D.5
Lutolf, M.P.6
-
41
-
-
37049022559
-
Differentiation is coupled to changes in the cell cycle regulatory apparatus of human embryonic stem cells
-
Filipczyk AA, Laslett AL, Mummery C, Pera MF. 2007 Differentiation is coupled to changes in the cell cycle regulatory apparatus of human embryonic stem cells. Stem Cell Res. 1, 45-60. (doi:10.1016/j. scr.2007.09.002)
-
(2007)
Stem Cell Res.
, vol.1
, pp. 45-60
-
-
Filipczyk, A.A.1
Laslett, A.L.2
Mummery, C.3
Pera, M.F.4
|