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Volumn 67, Issue 9, 2016, Pages 2655-2664

SLTAB2 is the paramutated SULFUREA locus in tomato

Author keywords

Auxin; DNA methylation; paramutation; photosynthesis; RdDM; siRNA; SULFUREA; VIGS

Indexed keywords

ALLELE; ARABIDOPSIS; DNA METHYLATION; GENE EXPRESSION PROFILING; GENETIC EPIGENESIS; GENETICS; MAIZE; MUTATION; PHOTOSYSTEM I; PHYSIOLOGY; PLANT GENE; TOMATO;

EID: 84969909293     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erw096     Document Type: Article
Times cited : (17)

References (29)
  • 1
    • 84878022987 scopus 로고    scopus 로고
    • ShortStack: Comprehensive annotation and quantification of small RNA genes
    • Axtell MJ. 2013. ShortStack: comprehensive annotation and quantification of small RNA genes. RNA 19, 740-751.
    • (2013) RNA , vol.19 , pp. 740-751
    • Axtell, M.J.1
  • 2
    • 33845687519 scopus 로고    scopus 로고
    • ATAB2 is a novel factor in the signalling pathway of light-controlled synthesis of photosystem proteins
    • Barneche F, Winter V, Crèvecoeur M, Rochaix J-D. 2006. ATAB2 is a novel factor in the signalling pathway of light-controlled synthesis of photosystem proteins. The EMBO Journal 25, 5907-5918.
    • (2006) The EMBO Journal , vol.25 , pp. 5907-5918
    • Barneche, F.1    Winter, V.2    Crèvecoeur, M.3    Rochaix, J.-D.4
  • 3
    • 84949772994 scopus 로고    scopus 로고
    • Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
    • Blevins T, Podicheti R, Mishra V, Marasco M, Wang J, Rusch D, Tang H, Pikaard CS. 2015. Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis. eLife 4, e09591.
    • (2015) ELife , vol.4 , pp. e09591
    • Blevins, T.1    Podicheti, R.2    Mishra, V.3    Marasco, M.4    Wang, J.5    Rusch, D.6    Tang, H.7    Pikaard, C.S.8
  • 4
    • 84921364518 scopus 로고    scopus 로고
    • Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana
    • Bond D, Baulcombe DC. 2015. Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, USA 112, 917-922.
    • (2015) Proceedings of the National Academy of Sciences, USA , vol.112 , pp. 917-922
    • Bond, D.1    Baulcombe, D.C.2
  • 5
    • 3042801584 scopus 로고    scopus 로고
    • Chromatin conversations: Mechanisms and implications of paramutation
    • Chandler VL, Stam M. 2004. Chromatin conversations: mechanisms and implications of paramutation. Nature Reviews Genetics 5, 532-544.
    • (2004) Nature Reviews Genetics , vol.5 , pp. 532-544
    • Chandler, V.L.1    Stam, M.2
  • 6
    • 0141995484 scopus 로고    scopus 로고
    • Selection of candidate housekeeping controls in tomato plants using EST data
    • Coker JS, Davies E. 2003. Selection of candidate housekeeping controls in tomato plants using EST data. BioTechniques 35, 740-746.
    • (2003) BioTechniques , vol.35 , pp. 740-746
    • Coker, J.S.1    Davies, E.2
  • 7
    • 0348134869 scopus 로고    scopus 로고
    • Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA
    • Dauvillée D, Stampacchia O, Girard-Bascou J, Rochaix JD. 2003. Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA. The EMBO Journal 22, 6378-6388.
    • (2003) The EMBO Journal , vol.22 , pp. 6378-6388
    • Dauvillée, D.1    Stampacchia, O.2    Girard-Bascou, J.3    Rochaix, J.D.4
  • 10
    • 0013368325 scopus 로고
    • Somatische Konversion bei Lycopersicon esculentum Mill
    • Hagemann R. 1958. Somatische Konversion bei Lycopersicon esculentum Mill. Zeitschrift für Vererbungslehre 89, 587-613.
    • (1958) Zeitschrift für Vererbungslehre , vol.89 , pp. 587-613
    • Hagemann, R.1
  • 11
    • 34250476750 scopus 로고
    • Somatic conversion (paramutation) at the sulfurea locus of Lycopersicon esculentum Mill. : IV. The genotypic determination of the frequency of conversion
    • Hagemann R. 1969. Somatic conversion (paramutation) at the sulfurea locus of Lycopersicon esculentum Mill.: IV. The genotypic determination of the frequency of conversion. Theoretical and Applied Genetics 39, 295-305.
    • (1969) Theoretical and Applied Genetics , vol.39 , pp. 295-305
    • Hagemann, R.1
  • 12
    • 84966185629 scopus 로고
    • Paramutation (somatic conversion) at the Sulfurea locus of Lycopersicon esculentum: V
    • Hagemann R, Snoad B. 1971. Paramutation (somatic conversion) at the Sulfurea locus of Lycopersicon esculentum: V. The localisation of Sulf. Heredity 27, 409-418.
    • (1971) The Localisation of Sulf. Heredity , vol.27 , pp. 409-418
    • Hagemann, R.1    Snoad, B.2
  • 13
    • 34547093155 scopus 로고    scopus 로고
    • CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing
    • Hetzl J, Foerster AM, Raidl G, Mittelsten Scheid O. 2007. CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing. The Plant Journal 51, 526-536.
    • (2007) The Plant Journal , vol.51 , pp. 526-536
    • Hetzl, J.1    Foerster, A.M.2    Raidl, G.3    Mittelsten Scheid, O.4
  • 14
    • 84869501857 scopus 로고    scopus 로고
    • Paramutation: A trans-homolog interaction affecting heritable gene regulation
    • Hollick JB. 2012. Paramutation: A trans-homolog interaction affecting heritable gene regulation. Current Opinion in Plant Biology 15, 536-543.
    • (2012) Current Opinion in Plant Biology , vol.15 , pp. 536-543
    • Hollick, J.B.1
  • 15
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. 2013. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology 14, R36.
    • (2013) Genome Biology , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 17
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger F, Andrews SR. 2011. Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 20
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15, 550.
    • (2014) Genome Biology , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 22
    • 84884695071 scopus 로고    scopus 로고
    • The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
    • Regulski M, Lu Z, Kendall J, Donoghue MT et al. 2013. The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research 23, 1651-1662.
    • (2013) Genome Research , vol.23 , pp. 1651-1662
    • Regulski, M.1    Lu, Z.2    Kendall, J.3    Donoghue, M.T.4
  • 23
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2009. edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140.
    • (2009) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 24
    • 84939516199 scopus 로고    scopus 로고
    • Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
    • Secco D, Wang C, Shou H, Schultz MD, Chiarenza S, Ecker JR, Whelan J, Lister R. 2015. Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements. eLife 4, e09343.
    • (2015) ELife , vol.4 , pp. e09343
    • Secco, D.1    Wang, C.2    Shou, H.3    Schultz, M.D.4    Chiarenza, S.5    Ecker, J.R.6    Whelan, J.7    Lister, R.8
  • 25
    • 0036811708 scopus 로고    scopus 로고
    • The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences
    • Stam M, Belele C, Ramakrishna W, Dorweiler JE, Bennetzen JL, Chandler VL. 2002. The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics 162, 917-30.
    • (2002) Genetics , vol.162 , pp. 917-930
    • Stam, M.1    Belele, C.2    Ramakrishna, W.3    Dorweiler, J.E.4    Bennetzen, J.L.5    Chandler, V.L.6
  • 26
    • 84863693752 scopus 로고    scopus 로고
    • The tomato genome sequence provides insights into fleshy fruit evolution
    • The Tomato Genome Consortium. 2012. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485, 635-641.
    • (2012) Nature , vol.485 , pp. 635-641
    • The Tomato Genome Consortium1
  • 27
    • 84923804522 scopus 로고    scopus 로고
    • MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
    • Urich M, Nery JR, Lister R, Schmitz RJ, Ecker JR. 2015. MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing. Nature Protocols 10, 475-483.
    • (2015) Nature Protocols , vol.10 , pp. 475-483
    • Urich, M.1    Nery, J.R.2    Lister, R.3    Schmitz, R.J.4    Ecker, J.R.5
  • 28
  • 29
    • 84943786479 scopus 로고    scopus 로고
    • A one precursor one siRNA model for Pol IV-dependent siRNA biogenesis
    • Zhai J, Bischof S, Wang H et al. 2015. A one precursor one siRNA model for Pol IV-dependent siRNA biogenesis. Cell 163, 445-455.
    • (2015) Cell , vol.163 , pp. 445-455
    • Zhai, J.1    Bischof, S.2    Wang, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.