Novel Luminex Assay for Telomere Repeat Mass Does Not Show Well Position Effects Like qPCR

PLoS ONE

Volumn 11, Issue 5, 2016, Pages

  Kibriya, Muhammad G ^a   Jasmine, Farzana ^a   Roy, Shantanu ^a   Ahsan, Habibul ^a   Pierce, Brandon L ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; ASSAY; COLUMN TO COLUMN VARIATION; CONTROLLED STUDY; HUMAN; INFORMED CONSENT; LIMIT OF QUANTITATION; LUMINEX ASSAY; MEASUREMENT ACCURACY; MEASUREMENT PRECISION; MULTIPLEX POLYMERASE CHAIN REACTION; POLYMERASE CHAIN REACTION; SINGLEPLEX POLYMERASE CHAIN REACTION; TELOMERE HOMEOSTASIS; TELOMERE REPEAT MASS; GENETICS; NUCLEOTIDE REPEAT; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; STANDARDS; TELOMERE;

HUMANS; REAL-TIME POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID; REPRODUCIBILITY OF RESULTS; TELOMERE;

EID: 84969835352     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0155548     Document Type: Article

References (30)

1. Sanders JL, Newman AB. Telomere length in epidemiology: a biomarker of aging, age-related disease, both, or neither? Epidemiol Rev; 2013; 35: 112-31. doi: 10.1093/epirev/mxs008 PMID: 23302541
2. Blackburn EH. Structure and function of telomeres. Nature; 1991; 350: 569-73. PMID: 1708110
3. Blackburn EH. Switching and signaling at the telomere. Cell; 2001; 106: 661-73. PMID: 11572773
4. Lapham K, Kvale MN, Lin J, Connell S, Croen LA, Dispensa BP, et al. Automated Assay of Telomere Length Measurement and Informatics for 100,000 Subjects in the Genetic Epidemiology Research on Adult Health and Aging (GERA) Cohort. Genetics; 2015; 200: 1061-72. doi: 10.1534/genetics.115. 178624 PMID: 26092717
5. Hou L, Joyce BT, Gao T, Liu L, Zheng Y, Penedo FJ, et al. Blood Telomere Length Attrition and Cancer Development in the Normative Aging Study Cohort. EBioMedicine; 2015; 2: 591-6. doi: 10.1016/j. ebiom.2015.04.008 PMID: 26288820
6. Cawthon RM. Telomere measurement by quantitative PCR. Nucleic Acids Res; 2002; 30: e47. PMID: 12000852
7. Lin J, Epel E, Cheon J, Kroenke C, Sinclair E, Bigos M, et al. Analyses and comparisons of telomerase activity and telomere length in human T and B cells: insights for epidemiology of telomere maintenance. J Immunol Methods; 2010; 352: 71-80. doi: 10.1016/j.jim.2009.09.012 PMID: 19837074
8. O'Callaghan NJ, Fenech M. A quantitative PCR method for measuring absolute telomere length. Biol Proced Online; 2011; 13: 3. doi: 10.1186/1480-9222-13-3 PMID: 21369534
9. Cawthon RM. Telomere length measurement by a novel monochrome multiplex quantitative PCR method. Nucleic Acids Res; 2009; 37: e21. doi: 10.1093/nar/gkn1027 PMID: 19129229
10. Eisenberg DT, Kuzawa CW, Hayes MG. Improving qPCR telomere length assays: Controlling for well position effects increases statistical power. Am J Hum Biol; 2015; 27: 570-5. doi: 10.1002/ajhb.22690 PMID: 25757675
11. Kibriya MG, Jasmine F, Roy S, Ahsan H, Pierce B. Measurement of telomere length: a new assay using QuantiGene chemistry on a Luminex platform. Cancer Epidemiol Biomarkers Prev; 2014; 23: 2667-72. doi: 10.1158/1055-9965.EPI-14-0610 PMID: 25472675
12. Pierce B, Jasmine F, Roy S, Zhang C, Aviv A, Hunt SC, et al. Telomere length measurement by a novel Luminex-based assay: a blinded comparison to Southern blot. IJMEG; 2016; 7: In press.
13. Gottschalk PG, Dunn JR. The five-parameter logistic: a characterization and comparison with the fourparameter logistic. Anal Biochem; 2005; 343: 54-65. PMID: 15953581
14. Ricketts JH, Head GA. A five-parameter logistic equation for investigating asymmetry of curvature in baroreflex studies. Am J Physiol; 1999; 277: R441-54. PMID: 10444551
15. Eisenhart C. The assumptions underlying the analysis of variance. Biometrics; 1947; 3: 1-22. PMID: 20240414
16. Tamhane A, Dunlop D. Statistics and data analysis: from elementary to intermediate. Prentice Hall; 2000.
17. Downey T. Analysis of a multifactor microarray study using Partek genomics solution. Methods Enzymol; 2006; 411: 256-270. PMID: 16939794
18. Aviv A, Hunt SC, Lin J, Cao X, Kimura M, Blackburn E. Impartial comparative analysis of measurement of leukocyte telomere length/DNA content by Southern blots and qPCR. Nucleic Acids Res; 2011; 39: e134. doi: 10.1093/nar/gkr634 PMID: 21824912
19. Martin-Ruiz CM, Baird D, Roger L, Boukamp P, Krunic D, Cawthon R, et al. Reproducibility of telomere length assessment: Authors' Response to Damjan Krstajic and Ljubomir Buturovic. Int J Epidemiol; 2015.
20. Kimura M, Stone RC, Hunt SC, Skurnick J, Lu X, Cao X, et al. Measurement of telomere length by the Southern blot analysis of terminal restriction fragment lengths. Nat Protoc; 2010; 5: 1596-607. doi: 10. 1038/nprot.2010.124 PMID: 21085125
21. Drury SS, Mabile E, Brett ZH, Esteves K, Jones E, Shirtcliff EA, et al. The association of telomere length with family violence and disruption. Pediatrics; 2014; 134: e128-37. doi: 10.1542/peds.2013-3415 PMID: 24936002
22. Zanet DL, Saberi S, Oliveira L, Sattha B, Gadawski I, Cote HC. Blood and dried blood spot telomere length measurement by qPCR: assay considerations. PLoS One; 2013; 8: e57787. doi: 10.1371/ journal.pone.0057787 PMID: 23451268
23. Lustig AJ. Potential Risks in the Paradigm of Basic to Translational Research: A Critical Evaluation of qPCR Telomere Size Techniques. J Cancer Epidemiol Treat; 2015; 1: 28-37. PMID: 26435846
24. Ehrlenbach S, Willeit P, Kiechl S, Willeit J, Reindl M, Schanda K, et al. Influences on the reduction of relative telomere length over 10 years in the population-based Bruneck Study: introduction of a wellcontrolled high-throughput assay. Int J Epidemiol; 2009; 38: 1725-34. doi: 10.1093/ije/dyp273 PMID: 19666704
25. Seow WJ, Cawthon RM, Purdue MP, Hu W, Gao YT, Huang WY, et al. Telomere length in white blood cell DNA and lung cancer: a pooled analysis of three prospective cohorts. Cancer Res; 2014; 74: 4090-8. doi: 10.1158/0008-5472.CAN-14-0459 PMID: 24853549
26. De Vivo I, Prescott J, Wong JY, Kraft P, Hankinson SE, Hunter DJ. A prospective study of relative telomere length and postmenopausal breast cancer risk. Cancer Epidemiol Biomarkers Prev; 2009; 18: 1152-6. doi: 10.1158/1055-9965.EPI-08-0998 PMID: 19293310
27. Shen J, Terry MB, Gurvich I, Liao Y, Senie RT, Santella RM. Short telomere length and breast cancer risk: a study in sister sets. Cancer Res; 2007; 67: 5538-44. PMID: 17545637
28. Verhulst S, Susser E, Factor-Litvak PR, Simons MJ, Benetos A, Steenstrup T, et al. Commentary: The reliability of telomere length measurements. Int J Epidemiol; 2015; 44: 1683-6. doi: 10.1093/ije/dyv166 PMID: 26403812
29. Tolios A, Teupser D, Holdt LM. Preanalytical Conditions and DNA Isolation Methods Affect Telomere Length Quantification in Whole Blood. PLoS One; 2015; 10: e0143889. doi: 10.1371/journal.pone.0143889 PMID: 26636575
30. Jodczyk S, Pearson JF, Aitchison A, Miller AL, Hampton MB, Kennedy MA. Telomere length measurement on the Roche LightCycler 480 Platform. Genet Test Mol Biomarkers; 2015; 19: 63-8. doi: 10. 1089/gtmb.2014.0208 PMID: 25535668