Temperature-dependent transformation of biogas-producing microbial communities points to the increased importance of hydrogenotrophic methanogenesis under thermophilic operation

Bioresource Technology

Volumn 177, Issue , 2015, Pages 375-380

  Pap, Bernadett ^a   Györkei, Ádám ^b   Boboescu, Iulian Zoltan ^c   Nagy, Ildikó K ^b   Bíró, Tibor ^d   Kondorosi, Éva ^b   Maróti, Gergely ^b,c  

^a SEQOMICS BIOTECHNOLOGY LTD   (Hungary)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c POLITEHNICA UNIVERSITY OF TIMISOARA   (Romania)

^d SZENT ISTVÁN UNIVERSITY   (Hungary)

Author keywords

Anaerobic digestion; Hydrogenase; Hydrogenotrophic methanogenesis; Metagenomics; Thermophilic microbial community

Indexed keywords

BIOGAS; MICROORGANISMS;

HYDROGENASES; HYDROGENOTROPHIC METHANOGENESIS; HYDROGENOTROPHIC METHANOGENS; METAGENOMICS; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY COMPOSITION; NEXT-GENERATION SEQUENCING; PHYSICAL-CHEMICAL PARAMETERS;

ANAEROBIC DIGESTION;

BIOGAS; HYDROGEN; HYDROGENASE; IRON HYDROGENASE; BIOFUEL; METHANE; VOLATILE FATTY ACID;

ANOXIC CONDITIONS; BIOGAS; BIOREACTOR; COMMUNITY COMPOSITION; EXPERIMENTAL DESIGN; GAS PRODUCTION; METHANOGENESIS; MICROBIAL COMMUNITY; PHYSICOCHEMICAL PROPERTY; TEMPERATURE EFFECT; THERMOPHILY; TRANSFORMATION;

ANAEROBIC DIGESTION; ARTICLE; BACTEROIDES; BACTEROIDETES; BIOFUEL PRODUCTION; BIOMASS; CHEMICAL PARAMETERS; CLOSTRIDIUM CELLULOLYTICUM; CLOSTRIDIUM SPOROGENES; CLOSTRIDIUM THERMOCELLUM; COMMUNITY STRUCTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DECOMPOSITION; DEGRADATION; DESULFOTOMACULUM; ECOSYSTEM; FIRMICUTES; METAGENOMICS; METHANOCULLEUS; METHANOGEN; METHANOGENESIS; METHANOGENIC ARCHAEON; METHANOSAETA; METHANOSARCINA; METHANOSPIRILLUM; METHANOTHERMOBACTER; MICROBIAL COMMUNITY; MICROBIAL METABOLISM; NONHUMAN; OXIDATION; PARABACTEROIDES; PHYSICAL PARAMETERS; PREVOTELLA; PROTEOBACTERIA; SYNTROPHOMONAS; SYNTROPHOMONAS WOLFEI; TEMPERATURE; TEMPERATURE ACCLIMATIZATION; TEMPERATURE STRESS; THERMOANAEROBACTERIALES; THERMOPHILIC BACTERIUM; THERMOTOGAE; ADAPTATION; BACTERIUM; BIOREACTOR; BIOSYNTHESIS; METABOLISM; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGICAL STRESS;

ADAPTATION, PHYSIOLOGICAL; BACTERIA; BIOFUELS; BIOREACTORS; FATTY ACIDS, VOLATILE; HYDROGEN; HYDROGENASE; METHANE; PHYLOGENY; STRESS, PHYSIOLOGICAL; TEMPERATURE;

EID: 84918832993     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2014.11.021     Document Type: Article

References (33)

1. Angelidaki I., Ahring B.K. Thermophilic anaerobic digestion of livestock waste: the effect of ammonia. Appl. Microbiol. Biotechnol. 1993, 38:560-564.
2. Boe K., Batstone D.J., Steyer J.P., Angelidaki I. State indicators for monitoring the anaerobic digestion process. Water Res. 2010, 44:5973-5980.
3. Demirel B., Scherer P. The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev. Environ. Sci. Biotechnol. 2008, 7:173-190.
4. Fotidis I., Wang H., Fiedel N.R., Luo G., Karakashev D.B., Angelidaki I. Bioaugmentation as a solution to increase methane production from an ammonia-rich substrate. Environ. Sci. Technol. 2014, 48:7669-7676.
5. Guo X., Wang C., Sun F., Zhu W., Wu W. A comparison of microbial characteristics between the thermophilic and mesophilic anaerobic digesters exposed to elevated food waste loadings. Bioresour. Technol. 2014, 152:420-428.
6. Hattori S. Syntrophic acetate-oxidizing microbes in methanogenic environments. Microbes Environ. 2008, 23:118-127.
7. Hollister E.B., Forrest A.K., Wilkinson H.H., Ebbole D.J., Tringe S.G., Malfatti S.A., Holtzapple M.T., Gentry T.J. Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion. PLoS ONE 2012, 7:e39689.
8. Hori T., Haruta S., Ueno Y., Ishii M., Igarashi Y. Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl. Environ. Microbiol. 2006, 72:1623-1630.
9. Kampmann K., Ratering S., Kramer I., Schmidt M., Zerr W., Schnell S. Unexpected stability of bacteroidetes and firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl. Environ. Microbiol. 2012, 78:2106-2119.
10. Karakashev D., Batstone D.J., Angelidaki I. Influence of environmental conditions on methanogenic compositions in anaerobic biogas reactors. Appl. Environ. Microbiol. 2005, 71:331-338.
11. Kovács E., Wirth R., Maróti G., Bagi Z., Rákhely G., Kovács K.L. Biogas production from protein-rich biomass: fed-batch anaerobic fermentation of casein and of pig blood and associated changes in microbial community composition. PLoS ONE 2013, 8:e77265.
12. Kröber M., Bekel T., Diaz N.N., Goesmann A., Jaenicke S., Krause L., Miller D., Runte K.J., Viehöver P., Pühler A., Schlüter A. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J. Biotechnol. 2009, 142:38-49.
13. Levén L., Eriksson A.R., Schnürer A. Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste. FEMS Microbiol. Ecol. 2007, 59:683-693.
14. Liu L., Li Y., Li S., Hu N., He Y., Pong R., Lin D., Lu L., Law M. Comparison of next-generation sequencing systems. J. Biomed. Biotechnol. 2012, 2012:251364.
15. Maune M.W., Tanner R.S. Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum. Int. J. Syst. Evol. Microbiol. 2012, 62:832-838.
16. Meyer F., Paarmann D., D'Souza M., Olson R., Glass E.M., Kubal M., Paczian T., Rodriguez A., Stevens R., Wilke A., Wilkening J., Edwards R.A. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008, 9:386.
17. Müller B., Sun L., Schnürer A. First insights into the syntrophic acetate-oxidizing bacteria - a genetic study. MicrobiologyOpen 2013, 2:35-53.
18. Pierce E., Xie G., Barabote R.D., Saunders E., Han C.S., Detter J.C., Richardson P., Brettin T.S., Das A., Ljungdahl L.G., Ragsdale S.W. The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ. Microbiol. 2008, 10:2550-2573.
19. Schnürer A., Nordberg A. Ammonia, a selective agent for methane production by syntrophic acetate oxidation at mesophilic temperature. Water Sci. Technol. 2008, 57:735-740.
20. Schnürer A., Zellner G., Svensson B.H. Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors. FEMS Microbiol. Ecol. 1999, 29:249-261.
21. Sharma P.K., Capalash N., Kaur J. An improved method for single step purification of metagenomic DNA. Mol. Biotechnol. 2007, 36:61-63.
22. Shigematsu T., Tang Y., Kobayashi T., Kawaguchi H., Morimura S., Kida K. Effect of dilution rate on metabolic pathway shift between aceticlastic and nonaceticlastic methanogenesis in chemostat cultivation. Appl. Environ. Microbiol. 2004, 70:4048-4052.
23. Sieber J.R., McInerney M.J., Gunsalus R.P. Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation. Annu. Rev. Microbiol. 2012, 66:429-452.
24. Sundberg C., Abu Al-Soud W., Larsson M., Alm E., Yekta S.S., Svensson B.H., Sørensen S.J., Karlsson A. 454-pyrosequencing analyses of bacterial and archael richness in 21 full-scale biogas digesters. FEMS Microbiol. Ecol. 2013, 85:612-626.
25. Tard C., Pickett C.J. Structural and functional analogues of the active sites of the [Fe]-, [NiFe]-, and [FeFe]-hydrogenases. Chem. Rev. 2009, 109:2245-2274.
26. Tiago I., Teixeira I., Silva S., Chung P., Veríssimo A., Manaia C.M. Metabolic and genetic diversity of mesophilic and thermophilic bacteria isolated from composted municipal sludge on poly-e-caprolactones. Curr. Microbiol. 2004, 49:407-414.
27. Tukacs-Hájos A., Pap B., Maróti G., Szendefy J., Szabó P., Rétfalvi T. Monitoring of thermophilic adaptation of mesophilic anaerobe fermentation of sugar beet pressed pulp. Bioresour. Technol. 2014, 166:288-294.
28. Vignais P.M., Billoud B., Meyer J. Classification and phylogeny of hydrogenases. FEMS Microbiol. Rev. 2001, 25:455-501.
29. Wang S., Huang H., Kahnt J., Thauer R.K. A reversible electron-bifurcating ferredoxin- and NAD-dependent [FeFe]-hydrogenase (HydABC) in Moorella thermoacetica. J. Bacteriol. 2013, 195:1267-1275.
30. Weiland P. Biogas production: current state and perspectives. Appl. Microbiol. Biotechnol. 2010, 85:849-860.
31. Wirth R., Kovács E., Maróti G., Bagi Z., Rákhely G., Kovács K.L. Characterization of a biogas-producing microbial community by short-read next generation sequencing. Biotechnol. Biofuels 2012, 5:41.
32. Wong M.T., Zhang D., Li J., Hui R.K., Tun H.M., Brar M.S., Park T.J., Chen Y., Leung F.C. Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment. Biotechnol. Biofuels 2013, 6:38.
33. Yadvika Santosh., Sreekrishnan T.R., Kohli S., Rana V. Enhancement of biogas production from solid substrates using different techniques - a review. Bioresour. Technol. 2004, 95:1-10.