메뉴 건너뛰기




Volumn 43, Issue , 2015, Pages 1195-1200

Resource allocation in metabolic networks: Kinetic optimization and approximations by FBA

Author keywords

Elementary flux modes; Enzyme kinetics; Metabolic optimization; Non linear optimization; SatFBA

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; ENERGY EXPENDITURE; KINETICS; METABOLITE; MICHAELIS MENTEN KINETICS; OXYGEN CONCENTRATION; PRECURSOR; PREDICTION; PRIORITY JOURNAL; RESOURCE ALLOCATION; STANDARD FLUX BALANCE ANALYSIS; STOICHIOMETRY; ALGORITHM; BIOLOGICAL MODEL; COMPUTER SIMULATION; METABOLIC FLUX ANALYSIS; METABOLISM; PROCEDURES; REPRODUCIBILITY;

EID: 84969401338     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST20150156     Document Type: Article
Times cited : (11)

References (16)
  • 1
    • 77749320898 scopus 로고    scopus 로고
    • What is flux balance analysis?
    • CrossRef PubMed
    • Orth, J.D., Thiele, I. and Palsson, B.O. (2010) What is flux balance analysis? Nat. Biotechnol. 28, 245-248 CrossRef PubMed
    • (2010) Nat. Biotechnol. , vol.28 , pp. 245-248
    • Orth, J.D.1    Thiele, I.2    Palsson, B.O.3
  • 2
    • 84930227327 scopus 로고    scopus 로고
    • Using genome-scale models to predict biological capabilities
    • CrossRef PubMed
    • O'Brien, E.J., Monk, J.M. and Palsson, B.O. (2015) Using genome-scale models to predict biological capabilities. Cell 161, 971-987 CrossRef PubMed
    • (2015) Cell , vol.161 , pp. 971-987
    • O'Brien, E.J.1    Monk, J.M.2    Palsson, B.O.3
  • 3
    • 77954190195 scopus 로고    scopus 로고
    • Computational models of metabolism: Stability and regulation in metabolic networks
    • (Rice S.A., ed.) , John Wiley & Sons, Hoboken, NJ, USA
    • Steuer R. Junker B. (2008) Computational models of metabolism: stability and regulation in metabolic networks In Advances in Chemical Physics (Rice S.A., ed.) vol. 142, pp. 105-251, John Wiley & Sons, Hoboken, NJ, USA
    • (2008) Advances in Chemical Physics , vol.142 , pp. 105-251
    • Steuer, R.1    Junker, B.2
  • 4
    • 85016890954 scopus 로고    scopus 로고
    • Optimality principles in the regulation of metabolic networks
    • CrossRef PubMed
    • Berkhout, J., Bruggeman, F.J. and Teusink, B. (2012) Optimality principles in the regulation of metabolic networks. Metabolites 2, 529-552 CrossRef PubMed
    • (2012) Metabolites , vol.2 , pp. 529-552
    • Berkhout, J.1    Bruggeman, F.J.2    Teusink, B.3
  • 5
    • 84868367714 scopus 로고    scopus 로고
    • Metabolic shifts: A fitness perspective for microbial cell factories
    • CrossRef PubMed
    • Goel, A., Wortel, M.T., Molenaar, D. and Teusink, B. (2012) Metabolic shifts: a fitness perspective for microbial cell factories. Biotechnol. Lett. 34, 2147-2160 CrossRef PubMed
    • (2012) Biotechnol. Lett. , vol.34 , pp. 2147-2160
    • Goel, A.1    Wortel, M.T.2    Molenaar, D.3    Teusink, B.4
  • 6
    • 43449132092 scopus 로고    scopus 로고
    • Is maximization of molar yield in metabolic networks favoured by evolution?
    • CrossRef PubMed
    • Schuster, S., Pfeiffer, T. and Fell, D.A. (2008) Is maximization of molar yield in metabolic networks favoured by evolution? J. Theor. Biol. 252, 497-504 CrossRef PubMed
    • (2008) J. Theor. Biol. , vol.252 , pp. 497-504
    • Schuster, S.1    Pfeiffer, T.2    Fell, D.A.3
  • 7
    • 79960346732 scopus 로고    scopus 로고
    • Combining metabolic pathway analysis with evolutionary game theory: Explaining the occurrence of low-yield pathways by an analytic optimization approach
    • CrossRef PubMed
    • Schuster, S., de Figueiredo, L.F., Schroeter, A. and Kaleta, C. (2011) Combining metabolic pathway analysis with evolutionary game theory: explaining the occurrence of low-yield pathways by an analytic optimization approach. Biosystems 105, 147-153 CrossRef PubMed
    • (2011) Biosystems , vol.105 , pp. 147-153
    • Schuster, S.1    De Figueiredo, L.F.2    Schroeter, A.3    Kaleta, C.4
  • 8
    • 34547887655 scopus 로고    scopus 로고
    • Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
    • CrossRef PubMed
    • Beg, Q.K., Vazquez, A., Ernst, J., de Menezes, M.A., Bar-Joseph, Z., Barabási, A.L. and Oltvai, Z.N. (2007) Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity. Proc. Natl. Acad. Sci. U.S.A. 104, 12663-12668 CrossRef PubMed
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 12663-12668
    • Beg, Q.K.1    Vazquez, A.2    Ernst, J.3    De Menezes, M.A.4    Bar-Joseph, Z.5    Barabási, A.L.6    Oltvai, Z.N.7
  • 10
    • 77951803596 scopus 로고    scopus 로고
    • Catabolic efficiency of aerobic glycolysis: The Warburg effect revisited
    • CrossRef PubMed
    • Vazquez, A., Liu, J., Zhou, Y. and Oltvai, Z.N. (2010) Catabolic efficiency of aerobic glycolysis: the Warburg effect revisited. BMC Syst. Biol. 4, 58 CrossRef PubMed
    • (2010) BMC Syst. Biol. , vol.4 , pp. 58
    • Vazquez, A.1    Liu, J.2    Zhou, Y.3    Oltvai, Z.N.4
  • 11
    • 79953661070 scopus 로고    scopus 로고
    • Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
    • CrossRef PubMed
    • Shlomi, T., Benyamini, T., Gottlieb, E., Sharan, R. and Ruppin, E. (2011) Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect. PLoS Comput. Biol. 7, e1002018 CrossRef PubMed
    • (2011) PLoS Comput. Biol. , vol.7 , pp. e1002018
    • Shlomi, T.1    Benyamini, T.2    Gottlieb, E.3    Sharan, R.4    Ruppin, E.5
  • 12
    • 79959610766 scopus 로고    scopus 로고
    • Economics of membrane occupancy and respiro-fermentation
    • CrossRef PubMed
    • Zhuang, K., Vemuri, G.N. and Mahadevan, R. (2011) Economics of membrane occupancy and respiro-fermentation. Mol. Syst. Biol. 7, 500 CrossRef PubMed
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 500
    • Zhuang, K.1    Vemuri, G.N.2    Mahadevan, R.3
  • 13
    • 84896713646 scopus 로고    scopus 로고
    • Enzyme allocation problems in kinetic metabolic networks: Optimal solutions are elementary flux modes
    • CrossRef PubMed
    • Müller, S., Regensburger, G. and Steuer, R. (2014) Enzyme allocation problems in kinetic metabolic networks: Optimal solutions are elementary flux modes. J. Theor. Biol. 347, 182-190 CrossRef PubMed
    • (2014) J. Theor. Biol. , vol.347 , pp. 182-190
    • Müller, S.1    Regensburger, G.2    Steuer, R.3
  • 14
    • 84899416159 scopus 로고    scopus 로고
    • Metabolic states with maximal specific rate carry flux through an elementary flux mode
    • CrossRef PubMed
    • Wortel, M.T., Peters, H., Hulshof, J., Teusink, B. and Bruggeman, F.J. (2014) Metabolic states with maximal specific rate carry flux through an elementary flux mode. FEBS J. 281, 1547-1555 CrossRef PubMed
    • (2014) FEBS J. , vol.281 , pp. 1547-1555
    • Wortel, M.T.1    Peters, H.2    Hulshof, J.3    Teusink, B.4    Bruggeman, F.J.5
  • 15
    • 79955761880 scopus 로고    scopus 로고
    • Molecular crowding defines a common origin for the Warburg effect in proliferating cells and the lactate threshold in muscle physiology
    • CrossRef PubMed
    • Vazquez, A. and Oltvai, Z.N. (2011) Molecular crowding defines a common origin for the Warburg effect in proliferating cells and the lactate threshold in muscle physiology. PLoS One 6, e19538 CrossRef PubMed
    • (2011) PLoS One , vol.6 , pp. e19538
    • Vazquez, A.1    Oltvai, Z.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.