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Volumn , Issue , 2009, Pages 3-28

Fixed-parameter algorithms for graph-modeled data clustering

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EID: 84967355737     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1142/9789812771667_0001     Document Type: Chapter
Times cited : (1)

References (74)
  • 2
    • 33746504540 scopus 로고    scopus 로고
    • Fast, effective vertex cover kernelization: A tale of two algorithms
    • ACS/IEEE
    • F. N. Abu-Khzam, M. A. Langston, and W. H. Suters. Fast, effective vertex cover kernelization: A tale of two algorithms. In Proc. 3rd AICCSA. ACS/IEEE, 2005. 16 pages.
    • (2005) Proc. 3rd AICCSA , pp. 16
    • Abu-Khzam, F.N.1    Langston, M.A.2    Suters, W.H.3
  • 4
    • 34848818026 scopus 로고    scopus 로고
    • Aggregating inconsistent information: Ranking and clustering
    • ACM
    • N. Ailon, M. Charikar, and A. Newman. Aggregating inconsistent information: ranking and clustering. In Proc. 37th STOC, pages 684-693. ACM, 2005.
    • (2005) Proc. 37th STOC , pp. 684-693
    • Ailon, N.1    Charikar, M.2    Newman, A.3
  • 7
    • 33644858199 scopus 로고    scopus 로고
    • Efficiently covering complex networks with cliques of similar vertices
    • M. Behrisch and A. Taraz. Efficiently covering complex networks with cliques of similar vertices. Theoretical Computer Science, 355(1):37-47, 2006.
    • (2006) Theoretical Computer Science , vol.355 , Issue.1 , pp. 37-47
    • Behrisch, M.1    Taraz, A.2
  • 10
    • 33748704060 scopus 로고    scopus 로고
    • Clique-detection models in computational biochemistry and genomics
    • S. Butenko and W. E. Wilhelm. Clique-detection models in computational biochemistry and genomics. European Journal of Operational Research, 173(1):1-17, 2006.
    • (2006) European Journal of Operational Research , vol.173 , Issue.1 , pp. 1-17
    • Butenko, S.1    Wilhelm, W.E.2
  • 15
    • 33750070292 scopus 로고    scopus 로고
    • Improved parameterized upper bounds for Vertex Cover
    • volume 4162 of LNCS, Springer
    • J. Chen, I. A. Kanj, and G. Xia. Improved parameterized upper bounds for Vertex Cover. In Proc. 31st MFCS, volume 4162 of LNCS, pages 238-249. Springer, 2006.
    • (2006) Proc. 31st MFCS , pp. 238-249
    • Chen, J.1    Kanj, I.A.2    Xia, G.3
  • 17
    • 33750278346 scopus 로고    scopus 로고
    • Improvement of Nemhauser-Trotter theorem and its applications in parameterized complexity
    • volume 3111 of LNCS, Springer
    • M. Chlebík and J. Chlebíková. Improvement of Nemhauser-Trotter theorem and its applications in parameterized complexity. In Proc. 9th SWAT, volume 3111 of LNCS, pages 174-186. Springer, 2004.
    • (2004) Proc. 9th SWAT , pp. 174-186
    • Chlebík, M.1    Chlebíková, J.2
  • 18
    • 35048876678 scopus 로고    scopus 로고
    • Linear kernels in linear time, or how to save k colors in O(n2) steps
    • volume 3353 of LNCS, Springer
    • B. Chor, M. R. Fellows, and D. W. Juedes. Linear kernels in linear time, or how to save k colors in O(n2) steps. In Proc. 30th WG, volume 3353 of LNCS, pages 257-269. Springer, 2004.
    • (2004) Proc. 30th WG , pp. 257-269
    • Chor, B.1    Fellows, M.R.2    Juedes, D.W.3
  • 20
    • 33744927172 scopus 로고    scopus 로고
    • On the fixed-parameter enumerability of Cluster Editing
    • volume 3787 of LNCS, Springer
    • P. Damaschke. On the fixed-parameter enumerability of Cluster Editing. In Proc. 31st WG, volume 3787 of LNCS, pages 283-294. Springer, 2005.
    • (2005) Proc. 31st WG , pp. 283-294
    • Damaschke, P.1
  • 21
    • 32144457586 scopus 로고    scopus 로고
    • Parameterized enumeration, transversals, and imperfect phylogeny reconstruction
    • P. Damaschke. Parameterized enumeration, transversals, and imperfect phylogeny reconstruction. Theoretical Computer Science, 351(3):337-350, 2006.
    • (2006) Theoretical Computer Science , vol.351 , Issue.3 , pp. 337-350
    • Damaschke, P.1
  • 23
    • 33750278534 scopus 로고    scopus 로고
    • The Cluster Editing problem: Implementations and experiments
    • volume 4169 of LNCS, Springer
    • F. K. H. A. Dehne, M. A. Langston, X. Luo, S. Pitre, P. Shaw, and Y. Zhang. The Cluster Editing problem: Implementations and experiments. In Proc. 2nd IWPEC, volume 4169 of LNCS, pages 13-24. Springer, 2006.
    • (2006) Proc. 2nd IWPEC , pp. 13-24
    • Dehne, F.K.H.A.1    Langston, M.A.2    Luo, X.3    Pitre, S.4    Shaw, P.5    Zhang, Y.6
  • 24
  • 26
    • 0037190359 scopus 로고    scopus 로고
    • Faster exact solutions for some NP-hard problems
    • L. Drori and D. Peleg. Faster exact solutions for some NP-hard problems. Theoretical Computer Science, 287(2):473-499, 2002.
    • (2002) Theoretical Computer Science , vol.287 , Issue.2 , pp. 473-499
    • Drori, L.1    Peleg, D.2
  • 27
    • 26844475386 scopus 로고    scopus 로고
    • Quasiconvex analysis of backtracking algorithms
    • ACM/SIAM
    • D. Eppstein. Quasiconvex analysis of backtracking algorithms. In Proc. 15th SODA, pages 788-797. ACM/SIAM, 2004.
    • (2004) Proc. 15th SODA , pp. 788-797
    • Eppstein, D.1
  • 31
    • 33746404819 scopus 로고    scopus 로고
    • Some new techniques in design and analysis of exact (exponential) algorithms
    • F. V. Fomin, F. Grandoni, and D. Kratsch. Some new techniques in design and analysis of exact (exponential) algorithms. Bulletin of the EATCS, 87:47-77, 2005.
    • (2005) Bulletin of the EATCS , vol.87
    • Fomin, F.V.1    Grandoni, F.2    Kratsch, D.3
  • 33
    • 21044455172 scopus 로고    scopus 로고
    • Automated generation of search tree algorithms for hard graph modification problems
    • J. Gramm, J. Guo, F. Hüffner, and R. Niedermeier. Automated generation of search tree algorithms for hard graph modification problems. Algorithmica, 39(4):321-347, 2004.
    • (2004) Algorithmica , vol.39 , Issue.4 , pp. 321-347
    • Gramm, J.1    Guo, J.2    Hüffner, F.3    Niedermeier, R.4
  • 34
    • 22344446469 scopus 로고    scopus 로고
    • Graph-modeled data clustering:Exact algorithms for clique generation
    • J. Gramm, J. Guo, F. Hüffner, and R. Niedermeier. Graph-modeled data clustering:Exact algorithms for clique generation. Theory of Computing Systems, 38(4):373-392, 2005.
    • (2005) Theory of Computing Systems , vol.38 , Issue.4 , pp. 373-392
    • Gramm, J.1    Guo, J.2    Hüffner, F.3    Niedermeier, R.4
  • 35
    • 33646849110 scopus 로고    scopus 로고
    • Data reduction, exact, and heuristic algorithms for clique cover
    • SIAM, Long version to appear under the title "Data reduction and exact algorithms for clique cover" in ACM Journal of Experimental Algorithmics
    • J. Gramm, J. Guo, F. Hüffner, and R. Niedermeier. Data reduction, exact, and heuristic algorithms for clique cover. In Proc. 8th ALENEX, pages 86-94. SIAM, 2006. Long version to appear under the title "Data reduction and exact algorithms for clique cover" in ACM Journal of Experimental Algorithmics.
    • (2006) Proc. 8th ALENEX , pp. 86-94
    • Gramm, J.1    Guo, J.2    Hüffner, F.3    Niedermeier, R.4
  • 38
    • 54249148532 scopus 로고    scopus 로고
    • A more effective linear kernelization for cluster editing
    • LNCS. Springer, To appear
    • J. Guo. A more effective linear kernelization for cluster editing. In Proc. ESCAPE, LNCS. Springer, 2007. To appear.
    • (2007) Proc. ESCAPE
    • Guo, J.1
  • 39
    • 37149054237 scopus 로고    scopus 로고
    • Invitation to data reduction and problem kernelization
    • J. Guo and R. Niedermeier. Invitation to data reduction and problem kernelization. ACM SIGACT News, 38(1):31-45, 2007.
    • (2007) ACM SIGACT News , vol.38 , Issue.1 , pp. 31-45
    • Guo, J.1    Niedermeier, R.2
  • 40
    • 26844533315 scopus 로고    scopus 로고
    • Parameterized complexity of generalized Vertex Cover problems
    • volume 3608 of LNCS, Springer, Long version to appear under the title "Parameterized complexity of Vertex Cover variants" in Theory of Computing Systems
    • J. Guo, R. Niedermeier, and S. Wernicke. Parameterized complexity of generalized Vertex Cover problems. In Proc. 9th WADS, volume 3608 of LNCS, pages 36-48. Springer, 2005. Long version to appear under the title "Parameterized complexity of Vertex Cover variants" in Theory of Computing Systems.
    • (2005) Proc. 9th WADS , pp. 36-48
    • Guo, J.1    Niedermeier, R.2    Wernicke, S.3
  • 41
    • 44949287238 scopus 로고
    • A simple lower bound on edge coverings by cliques
    • A. Gyárfás. A simple lower bound on edge coverings by cliques. Discrete Mathematics, 85(1):103-104, 1990.
    • (1990) Discrete Mathematics , vol.85 , Issue.1 , pp. 103-104
    • Gyárfás, A.1
  • 42
    • 0000109157 scopus 로고    scopus 로고
    • 1-ε{lunate}
    • 1-ε{lunate}. Acta Mathematica, 182(1):105-142, 1999.
    • (1999) Acta Mathematica , vol.182 , Issue.1 , pp. 105-142
    • Hastad, J.1
  • 44
    • 27144509327 scopus 로고    scopus 로고
    • Linear-time enumeration of isolated cliques
    • volume 3669 of LNCS, Springer
    • H. Ito, K. Iwama, and T. Osumi. Linear-time enumeration of isolated cliques. In Proc. 13th ESA, volume 3669 of LNCS, pages 119-130. Springer, 2005.
    • (2005) Proc. 13th ESA , pp. 119-130
    • Ito, H.1    Iwama, K.2    Osumi, T.3
  • 45
    • 1042292571 scopus 로고    scopus 로고
    • Graph-based clustering for finding distant relationships in a large set of protein sequences
    • H. Kawaji, Y. Takenaka, and H. Matsuda. Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinformatics, 20(2):243-252, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 243-252
    • Kawaji, H.1    Takenaka, Y.2    Matsuda, H.3
  • 46
    • 0035748125 scopus 로고    scopus 로고
    • A graph-based clustering method for a large set of sequences using a graph partitioning algorithm
    • H. Kawaji, Y. Yamaguchi, H. Matsuda, and A. Hashimoto. A graph-based clustering method for a large set of sequences using a graph partitioning algorithm. Genome Informatics, 12:93-102, 2001.
    • (2001) Genome Informatics , vol.12 , pp. 93-102
    • Kawaji, H.1    Yamaguchi, Y.2    Matsuda, H.3    Hashimoto, A.4
  • 47
    • 0015650608 scopus 로고
    • Determination of keyword conflict
    • E. Kellerman. Determination of keyword conflict. IBMTechnical Disclosure Bulletin, 16(2):544-546, 1973.
    • (1973) IBMTechnical Disclosure Bulletin , vol.16 , Issue.2 , pp. 544-546
    • Kellerman, E.1
  • 50
    • 37849051039 scopus 로고    scopus 로고
    • Isolation concepts for enumerating dense subgraphs
    • volume 4598 of LNCS, Springer
    • C. Komusiewicz, F. Hüffner, H. Moser, and R. Niedermeier. Isolation concepts for enumerating dense subgraphs. In Proc. 13th COCOON, volume 4598 of LNCS, pages 140-150. Springer, 2007.
    • (2007) Proc. 13th COCOON , pp. 140-150
    • Komusiewicz, C.1    Hüffner, F.2    Moser, H.3    Niedermeier, R.4
  • 52
    • 0017932071 scopus 로고
    • Covering edges by cliques with regard to keyword conflicts and intersection graphs
    • L. T. Kou, L. J. Stockmeyer, and C.-K. Wong. Covering edges by cliques with regard to keyword conflicts and intersection graphs. Communications of the ACM, 21(2):135-139, 1978.
    • (1978) Communications of the ACM , vol.21 , Issue.2 , pp. 135-139
    • Kou, L.T.1    Stockmeyer, L.J.2    Wong, C.-K.3
  • 53
    • 0022735230 scopus 로고
    • NP-hard problems in hierarchical-tree clustering
    • M. Křivánek and J. Morávek. NP-hard problems in hierarchical-tree clustering. Acta Informatica, 23(3):311-323, 1986.
    • (1986) Acta Informatica , vol.23 , Issue.3 , pp. 311-323
    • Křivánek, M.1    Morávek, J.2
  • 55
    • 0028514351 scopus 로고
    • On the hardness of approximating minimization problems
    • C. Lund and M. Yannakakis. On the hardness of approximating minimization problems. Journal of the ACM, 41:960-981, 1994.
    • (1994) Journal of the ACM , vol.41 , pp. 960-981
    • Lund, C.1    Yannakakis, M.2
  • 56
    • 33646849980 scopus 로고    scopus 로고
    • Solving geometric covering problems by data reduction
    • volume 3221 of LNCS, Springer
    • S. Mecke and D.Wagner. Solving geometric covering problems by data reduction. In Proc. 12th ESA, volume 3221 of LNCS, pages 760-771. Springer, 2004.
    • (2004) Proc. 12th ESA , pp. 760-771
    • Mecke, S.1    Wagner, D.2
  • 59
    • 0033874612 scopus 로고    scopus 로고
    • A general method to speed up fixed-parametertractable algorithms
    • R. Niedermeier and P. Rossmanith. A general method to speed up fixed-parametertractable algorithms. Information Processing Letters, 73:125-129, 2000.
    • (2000) Information Processing Letters , vol.73 , pp. 125-129
    • Niedermeier, R.1    Rossmanith, P.2
  • 61
    • 0038362975 scopus 로고
    • Contentment in graph theory: Covering graphs with cliques
    • J. B. Orlin. Contentment in graph theory: Covering graphs with cliques. Indagationes Mathematicae (Proceedings), 80(5):406-424, 1977.
    • (1977) Indagationes Mathematicae (Proceedings) , vol.80 , Issue.5 , pp. 406-424
    • Orlin, J.B.1
  • 62
    • 3042621166 scopus 로고    scopus 로고
    • An algorithm for a letter-based representation of all-pairwise comparisons
    • H.-P. Piepho. An algorithm for a letter-based representation of all-pairwise comparisons. Journal of Computational and Graphical Statistics, 13(2):456-466, 2004.
    • (2004) Journal of Computational and Graphical Statistics , vol.13 , Issue.2 , pp. 456-466
    • Piepho, H.-P.1
  • 63
    • 33750262659 scopus 로고    scopus 로고
    • Applying modular decomposition to parameterized Bicluster Editing
    • volume 4169 of LNCS, Springer
    • F. Protti, M. D. da Silva, and J. L. Szwarcfiter. Applying modular decomposition to parameterized Bicluster Editing. In Proc. 2nd IWPEC, volume 4169 of LNCS, pages 1-12. Springer, 2006.
    • (2006) Proc. 2nd IWPEC , pp. 1-12
    • Protti, F.1    da Silva, M.D.2    Szwarcfiter, J.L.3
  • 64
    • 0034592585 scopus 로고    scopus 로고
    • Handling irregular ILP within conventional VLIW schedulers using artificial resource constraints
    • ACM
    • S. Rajagopalan, M. Vachharajani, and S. Malik. Handling irregular ILP within conventional VLIW schedulers using artificial resource constraints. In Proc. CASES, pages 157-164. ACM, 2000.
    • (2000) Proc. CASES , pp. 157-164
    • Rajagopalan, S.1    Vachharajani, M.2    Malik, S.3
  • 65
    • 32044431567 scopus 로고    scopus 로고
    • A method for clustering expression data based on graph structure
    • S. Seno, R. Teramoto, Y. Takenaka, and H.Matsuda. A method for clustering expression data based on graph structure. Genome Informatics, 15(2):151-160, 2004.
    • (2004) Genome Informatics , vol.15 , Issue.2 , pp. 151-160
    • Seno, S.1    Teramoto, R.2    Takenaka, Y.3    Matsuda, H.4
  • 69
    • 33750225843 scopus 로고    scopus 로고
    • Approximation algorithms for bi-clustering problems
    • volume 4175 of LNBI, Springer
    • L. Wang, Y. Lin, and X. Liu. Approximation algorithms for bi-clustering problems. In Proc. 6th WABI, volume 4175 of LNBI, pages 310-320. Springer, 2006.
    • (2006) Proc. 6th WABI , pp. 310-320
    • Wang, L.1    Lin, Y.2    Liu, X.3
  • 70
    • 4243097688 scopus 로고    scopus 로고
    • Covering trains by stations or the power of data reduction
    • K. Weihe. Covering trains by stations or the power of data reduction. In Proc. 1st ALEX, pages 1-8, 1998.
    • (1998) Proc. 1st ALEX , pp. 1-8
    • Weihe, K.1
  • 72
    • 35248898344 scopus 로고    scopus 로고
    • Exact algorithms for NP-hard problems: A survey
    • volume 2570 of LNCS, Springer
    • G. J. Woeginger. Exact algorithms for NP-hard problems: A survey. In Proc. 5th IWCO, volume 2570 of LNCS, pages 185-208. Springer, 2003.
    • (2003) Proc. 5th IWCO , pp. 185-208
    • Woeginger, G.J.1
  • 73
    • 33645319955 scopus 로고    scopus 로고
    • Predicting interactions in protein networks by completing defective cliques
    • H. Yu, A. Paccanaro, V. Trifonov, and M. Gerstein. Predicting interactions in protein networks by completing defective cliques. Bioinformatics, 22(7):823-829, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.7 , pp. 823-829
    • Yu, H.1    Paccanaro, A.2    Trifonov, V.3    Gerstein, M.4
  • 74
    • 41349088754 scopus 로고    scopus 로고
    • Genome-scale computational approaches to memory-intensive applications in systems biology
    • IEEE Computer Society
    • Y. Zhang, F. N. Abu-Khzam, N. E. Baldwin, E. J. Chesler, Michael A. Langston, and Nagiza F. Samatova. Genome-scale computational approaches to memory-intensive applications in systems biology. In Proc. 18th SC, page e12. IEEE Computer Society, 2005.
    • (2005) Proc. 18th SC , pp. e12
    • Zhang, Y.1    Abu-Khzam, F.N.2    Baldwin, N.E.3    Chesler, E.J.4    Langston, M.A.5    Samatova, N.F.6


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