-
1
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J., and Schwede, T. (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
2
-
-
0027139717
-
Photoinhibition and D1 protein degradation in peas acclimated to different growth irradiances
-
Aro, E.M., McCaffery, S., and Anderson, J.M. (1993). Photoinhibition and D1 protein degradation in peas acclimated to different growth irradiances. Plant Physiol. 103: 835-843.
-
(1993)
Plant Physiol
, vol.103
, pp. 835-843
-
-
Aro, E.M.1
McCaffery, S.2
Anderson, J.M.3
-
3
-
-
84865314345
-
A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii
-
Beel, B., Prager, K., Spexard, M., Sasso, S., Weiss, D., Müller, N., Heinnickel, M., Dewez, D., Ikoma, D., Grossman, A.R., Kottke, T., and Mittag, M. (2012). A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii. Plant Cell 24: 2992-3008.
-
(2012)
Plant Cell
, vol.24
, pp. 2992-3008
-
-
Beel, B.1
Prager, K.2
Spexard, M.3
Sasso, S.4
Weiss, D.5
Müller, N.6
Heinnickel, M.7
Dewez, D.8
Ikoma, D.9
Grossman, A.R.10
Kottke, T.11
Mittag, M.12
-
4
-
-
84912093964
-
UV-B-responsive association of the Arabidopsis bZIP transcription factor ELONGATED HYPOCOTYL5 with target genes, including its own promoter
-
Binkert, M., Kozma-Bognár, L., Terecskei, K., De Veylder, L., Nagy, F., and Ulm, R. (2014). UV-B-responsive association of the Arabidopsis bZIP transcription factor ELONGATED HYPOCOTYL5 with target genes, including its own promoter. Plant Cell 26: 4200-4213.
-
(2014)
Plant Cell
, vol.26
, pp. 4200-4213
-
-
Binkert, M.1
Kozma-Bognár, L.2
Terecskei, K.3
De Veylder, L.4
Nagy, F.5
Ulm, R.6
-
5
-
-
79751503682
-
TALEs of genome targeting
-
Boch, J. (2011). TALEs of genome targeting. Nat. Biotechnol. 29: 135-136.
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 135-136
-
-
Boch, J.1
-
6
-
-
55649085492
-
The occurrence of the psbS gene product in Chlamydomonas reinhardtii and in other photosynthetic organisms and its correlation with energy quenching
-
Bonente, G., Passarini, F., Cazzaniga, S., Mancone, C., Buia, M.C., Tripodi, M., Bassi, R., and Caffarri, S. (2008). The occurrence of the psbS gene product in Chlamydomonas reinhardtii and in other photosynthetic organisms and its correlation with energy quenching. Photochem. Photobiol. 84: 1359-1370.
-
(2008)
Photochem. Photobiol
, vol.84
, pp. 1359-1370
-
-
Bonente, G.1
Passarini, F.2
Cazzaniga, S.3
Mancone, C.4
Buia, M.C.5
Tripodi, M.6
Bassi, R.7
Caffarri, S.8
-
7
-
-
0033747217
-
Ultraviolet-B radiation impacts light-mediated turnover of the photosystem II reaction center heterodimer in Arabidopsis mutants altered in phenolic metabolism
-
Booij-James, I.S., Dube, S.K., Jansen, M.A.K., Edelman, M., and Mattoo, A.K. (2000). Ultraviolet-B radiation impacts light-mediated turnover of the photosystem II reaction center heterodimer in Arabidopsis mutants altered in phenolic metabolism. Plant Physiol. 124: 1275-1284.
-
(2000)
Plant Physiol
, vol.124
, pp. 1275-1284
-
-
Booij-James, I.S.1
Dube, S.K.2
Jansen, M.A.K.3
Edelman, M.4
Mattoo, A.K.5
-
8
-
-
0034601028
-
The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability
-
Boudreau, E., Nickelsen, J., Lemaire, S.D., Ossenbühl, F., and Rochaix, J.D. (2000). The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability. EMBO J. 19: 3366-3376.
-
(2000)
EMBO J
, vol.19
, pp. 3366-3376
-
-
Boudreau, E.1
Nickelsen, J.2
Lemaire, S.D.3
Ossenbühl, F.4
Rochaix, J.D.5
-
9
-
-
38949188735
-
UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH
-
Brown, B.A., and Jenkins, G.I. (2008). UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. Plant Physiol. 146: 576-588.
-
(2008)
Plant Physiol
, vol.146
, pp. 576-588
-
-
Brown, B.A.1
Jenkins, G.I.2
-
10
-
-
29144433413
-
A UV-B-specific signaling component orchestrates plant UV protection
-
Brown, B.A., Cloix, C., Jiang, G.H., Kaiserli, E., Herzyk, P., Kliebenstein, D.J., and Jenkins, G.I. (2005). A UV-B-specific signaling component orchestrates plant UV protection. Proc. Natl. Acad. Sci. USA 102: 18225-18230.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18225-18230
-
-
Brown, B.A.1
Cloix, C.2
Jiang, G.H.3
Kaiserli, E.4
Herzyk, P.5
Kliebenstein, D.J.6
Jenkins, G.I.7
-
11
-
-
0034015481
-
Degradation and de novo synthesis of D1 protein and psbA transcript levels in Chlamydomonas reinhardtii during UV-B inactivation of photosynthesis and its reactivation
-
Chaturvedi, R., and Shyam, R. (2000). Degradation and de novo synthesis of D1 protein and psbA transcript levels in Chlamydomonas reinhardtii during UV-B inactivation of photosynthesis and its reactivation. J. Biosci. 25: 65-71.
-
(2000)
J. Biosci
, vol.25
, pp. 65-71
-
-
Chaturvedi, R.1
Shyam, R.2
-
12
-
-
84863393216
-
Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges
-
Christie, J.M., Arvai, A.S., Baxter, K.J., Heilmann, M., Pratt, A.J., O’Hara, A., Kelly, S.M., Hothorn, M., Smith, B.O., Hitomi, K., Jenkins, G.I., and Getzoff, E.D. (2012). Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges. Science 335: 1492-1496.
-
(2012)
Science
, vol.335
, pp. 1492-1496
-
-
Christie, J.M.1
Arvai, A.S.2
Baxter, K.J.3
Heilmann, M.4
Pratt, A.J.5
O’Hara, A.6
Kelly, S.M.7
Hothorn, M.8
Smith, B.O.9
Hitomi, K.10
Jenkins, G.I.11
Getzoff, E.D.12
-
13
-
-
84867036845
-
C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein
-
Cloix, C., Kaiserli, E., Heilmann, M., Baxter, K.J., Brown, B.A., O’Hara, A., Smith, B.O., Christie, J.M., and Jenkins, G.I. (2012). C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein. Proc. Natl. Acad. Sci. USA 109: 16366-16370.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 16366-16370
-
-
Cloix, C.1
Kaiserli, E.2
Heilmann, M.3
Baxter, K.J.4
Brown, B.A.5
O’Hara, A.6
Smith, B.O.7
Christie, J.M.8
Jenkins, G.I.9
-
14
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
15
-
-
84871616342
-
The UV-B photoreceptor UVR8 promotes photosynthetic efficiency in Arabidopsis thaliana exposed to elevated levels of UV-B
-
Davey, M.P., Susanti, N.I., Wargent, J.J., Findlay, J.E., Paul Quick, W., Paul, N.D., and Jenkins, G.I. (2012). The UV-B photoreceptor UVR8 promotes photosynthetic efficiency in Arabidopsis thaliana exposed to elevated levels of UV-B. Photosynth. Res. 114: 121-131.
-
(2012)
Photosynth. Res
, vol.114
, pp. 121-131
-
-
Davey, M.P.1
Susanti, N.I.2
Wargent, J.J.3
Findlay, J.E.4
Paul Quick, W.5
Paul, N.D.6
Jenkins, G.I.7
-
16
-
-
0037423885
-
Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas
-
Depège, N., Bellafiore, S., and Rochaix, J.D. (2003). Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas. Science 299: 1572-1575.
-
(2003)
Science
, vol.299
, pp. 1572-1575
-
-
Depège, N.1
Bellafiore, S.2
Rochaix, J.D.3
-
17
-
-
84939547919
-
Damage and protection of the photosynthetic apparatus from UV-B radiation. II. Effect of quercetin at different pH
-
Dobrikova, A.G., and Apostolova, E.L. (2015). Damage and protection of the photosynthetic apparatus from UV-B radiation. II. Effect of quercetin at different pH. J. Plant Physiol. 184: 98-105.
-
(2015)
J. Plant Physiol
, vol.184
, pp. 98-105
-
-
Dobrikova, A.G.1
Apostolova, E.L.2
-
18
-
-
84874454315
-
Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival
-
Duanmu, D., Casero, D., Dent, R.M., Gallaher, S., Yang, W., Rockwell, N.C., Martin, S.S., Pellegrini, M., Niyogi, K.K., Merchant, S.S., Grossman, A.R., and Lagarias, J.C. (2013). Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proc. Natl. Acad. Sci. USA 110: 3621-3626.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 3621-3626
-
-
Duanmu, D.1
Casero, D.2
Dent, R.M.3
Gallaher, S.4
Yang, W.5
Rockwell, N.C.6
Martin, S.S.7
Pellegrini, M.8
Niyogi, K.K.9
Merchant, S.S.10
Grossman, A.R.11
Lagarias, J.C.12
-
19
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M., and Lash, A.E. (2002). Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
20
-
-
62049085316
-
Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis
-
Favory, J.J., et al. (2009). Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis. EMBO J. 28: 591-601.
-
(2009)
EMBO J
, vol.28
, pp. 591-601
-
-
Favory, J.J.1
-
21
-
-
80855123478
-
Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway
-
González Besteiro, M.A., Bartels, S., Albert, A., and Ulm, R. (2011). Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway. Plant J. 68: 727-737.
-
(2011)
Plant J
, vol.68
, pp. 727-737
-
-
González Besteiro, M.A.1
Bartels, S.2
Albert, A.3
Ulm, R.4
-
22
-
-
0013832925
-
Cytochrome f and plastocyanin: Their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi
-
Gorman, D.S., and Levine, R.P. (1965). Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi. Proc. Natl. Acad. Sci. USA 54: 1665-1669.
-
(1965)
Proc. Natl. Acad. Sci. USA
, vol.54
, pp. 1665-1669
-
-
Gorman, D.S.1
Levine, R.P.2
-
23
-
-
78650571336
-
Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis
-
Gruber, H., Heijde, M., Heller, W., Albert, A., Seidlitz, H.K., and Ulm, R. (2010). Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis. Proc. Natl. Acad. Sci. USA 107: 20132-20137.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 20132-20137
-
-
Gruber, H.1
Heijde, M.2
Heller, W.3
Albert, A.4
Seidlitz, H.K.5
Ulm, R.6
-
24
-
-
3042648581
-
Chlamydomonas and Arabidopsis. A dynamic duo
-
Gutman, B.L., and Niyogi, K.K. (2004). Chlamydomonas and Arabidopsis. A dynamic duo. Plant Physiol. 135: 607-610.
-
(2004)
Plant Physiol
, vol.135
, pp. 607-610
-
-
Gutman, B.L.1
Niyogi, K.K.2
-
25
-
-
0034438382
-
Effects of solar UV-B radiation on aquatic ecosystems
-
Hader, D.P. (2000). Effects of solar UV-B radiation on aquatic ecosystems. Adv. Space Res. 26: 2029-2040.
-
(2000)
Adv. Space Res
, vol.26
, pp. 2029-2040
-
-
Hader, D.P.1
-
26
-
-
77957959669
-
Contributions of visible and ultraviolet parts of sunlight to photoinhibition
-
Hakala-Yatkin, M., Mäntysaari, M., Mattila, H., and Tyystjärvi, E. (2010). Contributions of visible and ultraviolet parts of sunlight to photoinhibition. Plant Cell Physiol. 51: 1745-1753.
-
(2010)
Plant Cell Physiol
, vol.51
, pp. 1745-1753
-
-
Hakala-Yatkin, M.1
Mäntysaari, M.2
Mattila, H.3
Tyystjärvi, E.4
-
28
-
-
84859646883
-
UV-B photoreceptor-mediated signalling in plants
-
Heijde, M., and Ulm, R. (2012). UV-B photoreceptor-mediated signalling in plants. Trends Plant Sci. 17: 230-237.
-
(2012)
Trends Plant Sci
, vol.17
, pp. 230-237
-
-
Heijde, M.1
Ulm, R.2
-
29
-
-
84874964240
-
Reversion of the Arabidopsis UV-B photoreceptor UVR8 to the homodimeric ground state
-
Heijde, M., and Ulm, R. (2013). Reversion of the Arabidopsis UV-B photoreceptor UVR8 to the homodimeric ground state. Proc. Natl. Acad. Sci. USA 110: 1113-1118.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 1113-1118
-
-
Heijde, M.1
Ulm, R.2
-
30
-
-
84890282620
-
Constitutively active UVR8 photoreceptor variant in Arabidopsis
-
Heijde, M., Binkert, M., Yin, R., Ares-Orpel, F., Rizzini, L., Van De Slijke, E., Persiau, G., Nolf, J., Gevaert, K., De Jaeger, G., and Ulm, R. (2013). Constitutively active UVR8 photoreceptor variant in Arabidopsis. Proc. Natl. Acad. Sci. USA 110: 20326-20331.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 20326-20331
-
-
Heijde, M.1
Binkert, M.2
Yin, R.3
Ares-Orpel, F.4
Rizzini, L.5
Van De Slijke, E.6
Persiau, G.7
Nolf, J.8
Gevaert, K.9
De Jaeger, G.10
Ulm, R.11
-
31
-
-
84871751252
-
Rapid reversion from monomer to dimer regenerates the ultraviolet-B photoreceptor UV RESISTANCE LOCUS8 in intact Arabidopsis plants
-
Heilmann, M., and Jenkins, G.I. (2013). Rapid reversion from monomer to dimer regenerates the ultraviolet-B photoreceptor UV RESISTANCE LOCUS8 in intact Arabidopsis plants. Plant Physiol. 161: 547-555.
-
(2013)
Plant Physiol
, vol.161
, pp. 547-555
-
-
Heilmann, M.1
Jenkins, G.I.2
-
32
-
-
0037687415
-
Phototropin is the blue-light receptor that controls multiple steps in the sexual life cycle of the green alga Chlamydomonas reinhardtii
-
Huang, K., and Beck, C.F. (2003). Phototropin is the blue-light receptor that controls multiple steps in the sexual life cycle of the green alga Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 100: 6269-6274.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6269-6274
-
-
Huang, K.1
Beck, C.F.2
-
33
-
-
84897452651
-
Photoactivated UVR8-COP1 module determines photomorphogenic UV-B signaling output in Arabidopsis
-
Huang, X., Yang, P., Ouyang, X., Chen, L., and Deng, X.W. (2014). Photoactivated UVR8-COP1 module determines photomorphogenic UV-B signaling output in Arabidopsis. PLoS Genet. 10: e1004218.
-
(2014)
PLoS Genet
, vol.10
-
-
Huang, X.1
Yang, P.2
Ouyang, X.3
Chen, L.4
Deng, X.W.5
-
34
-
-
0000808999
-
Low threshold levels of ultraviolet-B in a background of photosynthetically active radiation trigger rapid degradation of the D2 protein of photosystem-II
-
Jansen, M.A.K., Gaba, V., Greenberg, B.M., Mattoo, A.K., and Edelman, M. (1996). Low threshold levels of ultraviolet-B in a background of photosynthetically active radiation trigger rapid degradation of the D2 protein of photosystem-II. Plant J. 9: 693-699.
-
(1996)
Plant J
, vol.9
, pp. 693-699
-
-
Jansen, M.A.K.1
Gaba, V.2
Greenberg, B.M.3
Mattoo, A.K.4
Edelman, M.5
-
35
-
-
84930054524
-
Photosystem II repair in plant chloroplasts-Regulation, assisting proteins and shared components with photosystem II biogenesis
-
Järvi, S., Suorsa, M., and Aro, E.-M. (2015). Photosystem II repair in plant chloroplasts-Regulation, assisting proteins and shared components with photosystem II biogenesis. Biochim. Biophys. Acta 1847: 900-909.
-
(2015)
Biochim. Biophys. Acta
, vol.1847
, pp. 900-909
-
-
Järvi, S.1
Suorsa, M.2
Aro, E.-M.3
-
36
-
-
84896858372
-
The UV-B photoreceptor UVR8: From structure to physiology
-
Jenkins, G.I. (2014). The UV-B photoreceptor UVR8: from structure to physiology. Plant Cell 26: 21-37.
-
(2014)
Plant Cell
, vol.26
, pp. 21-37
-
-
Jenkins, G.I.1
-
37
-
-
0036581417
-
GATEWAY vectors for Agrobacterium-mediated plant transformation
-
Karimi, M., Inzé, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 193-195
-
-
Karimi, M.1
Inzé, D.2
Depicker, A.3
-
38
-
-
3042762373
-
"Vision" in single-celled algae
-
Kateriya, S., Nagel, G., Bamberg, E., and Hegemann, P. (2004). "Vision" in single-celled algae. News Physiol. Sci. 19: 133-137.
-
(2004)
News Physiol. Sci
, vol.19
, pp. 133-137
-
-
Kateriya, S.1
Nagel, G.2
Bamberg, E.3
Hegemann, P.4
-
39
-
-
84891620295
-
Algal photoreceptors: In vivo functions and potential applications
-
Kianianmomeni, A., and Hallmann, A. (2014). Algal photoreceptors: in vivo functions and potential applications. Planta 239: 1-26.
-
(2014)
Planta
, vol.239
, pp. 1-26
-
-
Kianianmomeni, A.1
Hallmann, A.2
-
40
-
-
0036742711
-
Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human regulator of chromatin condensation 1
-
Kliebenstein, D.J., Lim, J.E., Landry, L.G., and Last, R.L. (2002). Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human regulator of chromatin condensation 1. Plant Physiol. 130: 234-243.
-
(2002)
Plant Physiol
, vol.130
, pp. 234-243
-
-
Kliebenstein, D.J.1
Lim, J.E.2
Landry, L.G.3
Last, R.L.4
-
41
-
-
79957616145
-
A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii
-
Kropat, J., Hong-Hermesdorf, A., Casero, D., Ent, P., Castruita, M., Pellegrini, M., Merchant, S.S., and Malasarn, D. (2011). A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii. Plant J. 66: 770-780.
-
(2011)
Plant J
, vol.66
, pp. 770-780
-
-
Kropat, J.1
Hong-Hermesdorf, A.2
Casero, D.3
Ent, P.4
Castruita, M.5
Pellegrini, M.6
Merchant, S.S.7
Malasarn, D.8
-
42
-
-
34547407925
-
A specific c-type cytochrome maturation system is required for oxygenic photosynthesis
-
Kuras, R., Saint-Marcoux, D., Wollman, F.A., and de Vitry, C. (2007). A specific c-type cytochrome maturation system is required for oxygenic photosynthesis. Proc. Natl. Acad. Sci. USA 104: 9906-9910.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 9906-9910
-
-
Kuras, R.1
Saint-Marcoux, D.2
Wollman, F.A.3
de Vitry, C.4
-
43
-
-
84880815362
-
UV-B-induced photomorphogenesis in Arabidopsis
-
Li, J., Yang, L., Jin, D., Nezames, C.D., Terzaghi, W., and Deng, X.W. (2013). UV-B-induced photomorphogenesis in Arabidopsis. Protein Cell 4: 485-492.
-
(2013)
Protein Cell
, vol.4
, pp. 485-492
-
-
Li, J.1
Yang, L.2
Jin, D.3
Nezames, C.D.4
Terzaghi, W.5
Deng, X.W.6
-
44
-
-
84871896687
-
A photochromic histidine kinase rhodopsin (HKR1) that is bimodally switched by ultraviolet and blue light
-
Luck, M., Mathes, T., Bruun, S., Fudim, R., Hagedorn, R., Tran Nguyen, T.M., Kateriya, S., Kennis, J.T.M., Hildebrandt, P., and Hegemann, P. (2012). A photochromic histidine kinase rhodopsin (HKR1) that is bimodally switched by ultraviolet and blue light. J. Biol. Chem. 287: 40083-40090.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 40083-40090
-
-
Luck, M.1
Mathes, T.2
Bruun, S.3
Fudim, R.4
Hagedorn, R.5
Tran Nguyen, T.M.6
Kateriya, S.7
Kennis, J.T.M.8
Hildebrandt, P.9
Hegemann, P.10
-
45
-
-
84934282051
-
Proton-coupled electron transfer constitutes the photoactivation mechanism of the plant photoreceptor UVR8
-
Mathes, T., Heilmann, M., Pandit, A., Zhu, J., Ravensbergen, J., Kloz, M., Fu, Y., Smith, B.O., Christie, J.M., Jenkins, G.I., and Kennis, J.T. (2015). Proton-coupled electron transfer constitutes the photoactivation mechanism of the plant photoreceptor UVR8. J. Am. Chem. Soc. 137: 8113-8120.
-
(2015)
J. Am. Chem. Soc
, vol.137
, pp. 8113-8120
-
-
Mathes, T.1
Heilmann, M.2
Pandit, A.3
Zhu, J.4
Ravensbergen, J.5
Kloz, M.6
Fu, Y.7
Smith, B.O.8
Christie, J.M.9
Jenkins, G.I.10
Kennis, J.T.11
-
46
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
Merchant, S.S., et al. (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250.
-
(2007)
Science
, vol.318
, pp. 245-250
-
-
Merchant, S.S.1
-
47
-
-
63349090914
-
Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii
-
Molnar, A., Bassett, A., Thuenemann, E., Schwach, F., Karkare, S., Ossowski, S., Weigel, D., and Baulcombe, D. (2009). Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. Plant J. 58: 165-174.
-
(2009)
Plant J
, vol.58
, pp. 165-174
-
-
Molnar, A.1
Bassett, A.2
Thuenemann, E.3
Schwach, F.4
Karkare, S.5
Ossowski, S.6
Weigel, D.7
Baulcombe, D.8
-
48
-
-
0037189362
-
Channelrhodopsin-1: A light-gated proton channel in green algae
-
Nagel, G., Ollig, D., Fuhrmann, M., Kateriya, S., Musti, A.M., Bamberg, E., and Hegemann, P. (2002). Channelrhodopsin-1: a light-gated proton channel in green algae. Science 296: 2395-2398.
-
(2002)
Science
, vol.296
, pp. 2395-2398
-
-
Nagel, G.1
Ollig, D.2
Fuhrmann, M.3
Kateriya, S.4
Musti, A.M.5
Bamberg, E.6
Hegemann, P.7
-
49
-
-
0345133280
-
Channelrhodopsin-2, a directly light-gated cation-selective membrane channel
-
Nagel, G., Szellas, T., Huhn, W., Kateriya, S., Adeishvili, N., Berthold, P., Ollig, D., Hegemann, P., and Bamberg, E. (2003). Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proc. Natl. Acad. Sci. USA 100: 13940-13945.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13940-13945
-
-
Nagel, G.1
Szellas, T.2
Huhn, W.3
Kateriya, S.4
Adeishvili, N.5
Berthold, P.6
Ollig, D.7
Hegemann, P.8
Bamberg, E.9
-
50
-
-
84878984467
-
Evolution of flexible nonphotochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis
-
Niyogi, K.K., and Truong, T.B. (2013). Evolution of flexible nonphotochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis. Curr. Opin. Plant Biol. 16: 307-314.
-
(2013)
Curr. Opin. Plant Biol
, vol.16
, pp. 307-314
-
-
Niyogi, K.K.1
Truong, T.B.2
-
51
-
-
84868159269
-
In vivo function of tryptophans in the Arabidopsis UV-B photoreceptor UVR8
-
O’Hara, A., and Jenkins, G.I. (2012). In vivo function of tryptophans in the Arabidopsis UV-B photoreceptor UVR8. Plant Cell 24: 3755-3766.
-
(2012)
Plant Cell
, vol.24
, pp. 3755-3766
-
-
O’Hara, A.1
Jenkins, G.I.2
-
52
-
-
33747470675
-
CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis
-
Oravecz, A., Baumann, A., Máté, Z., Brzezinska, A., Molinier, J., Oakeley, E.J., Adám, E., Schäfer, E., Nagy, F., and Ulm, R. (2006). CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Plant Cell 18: 1975-1990.
-
(2006)
Plant Cell
, vol.18
, pp. 1975-1990
-
-
Oravecz, A.1
Baumann, A.2
Máté, Z.3
Brzezinska, A.4
Molinier, J.5
Oakeley, E.J.6
Adám, E.7
Schäfer, E.8
Nagy, F.9
Ulm, R.10
-
53
-
-
70849095710
-
An ancient light-harvesting protein is critical for the regulation of algal photosynthesis
-
Peers, G., Truong, T.B., Ostendorf, E., Busch, A., Elrad, D., Grossman, A.R., Hippler, M., and Niyogi, K.K. (2009). An ancient light-harvesting protein is critical for the regulation of algal photosynthesis. Nature 462: 518-521.
-
(2009)
Nature
, vol.462
, pp. 518-521
-
-
Peers, G.1
Truong, T.B.2
Ostendorf, E.3
Busch, A.4
Elrad, D.5
Grossman, A.R.6
Hippler, M.7
Niyogi, K.K.8
-
54
-
-
80855147852
-
RaptorX: Exploiting structure information for protein alignment by statistical inference
-
Peng, J., and Xu, J. (2011). RaptorX: exploiting structure information for protein alignment by statistical inference. Proteins 79 (suppl. 10): 161-171.
-
(2011)
Proteins
, vol.79
, pp. 161-171
-
-
Peng, J.1
Xu, J.2
-
55
-
-
84903413244
-
Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation
-
Ranjan, A., Dickopf, S., Ullrich, K.K., Rensing, S.A., and Hoecker, U. (2014). Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. BMC Plant Biol. 14: 178.
-
(2014)
BMC Plant Biol
, vol.14
, pp. 178
-
-
Ranjan, A.1
Dickopf, S.2
Ullrich, K.K.3
Rensing, S.A.4
Hoecker, U.5
-
56
-
-
1942501816
-
The CPH1 gene of Chlamydomonas reinhardtii encodes two forms of cryptochrome whose levels are controlled by light-induced proteolysis
-
Reisdorph, N.A., and Small, G.D. (2004). The CPH1 gene of Chlamydomonas reinhardtii encodes two forms of cryptochrome whose levels are controlled by light-induced proteolysis. Plant Physiol. 134: 1546-1554.
-
(2004)
Plant Physiol
, vol.134
, pp. 1546-1554
-
-
Reisdorph, N.A.1
Small, G.D.2
-
57
-
-
34447618573
-
PAR and UV effects on vertical migration and photosynthesis in Euglena gracilis
-
Richter, P., Helbling, W., Streb, C., and Häder, D.P. (2007). PAR and UV effects on vertical migration and photosynthesis in Euglena gracilis. Photochem. Photobiol. 83: 818-823.
-
(2007)
Photochem. Photobiol
, vol.83
, pp. 818-823
-
-
Richter, P.1
Helbling, W.2
Streb, C.3
Häder, D.P.4
-
58
-
-
79953272725
-
Perception of UV-B by the Arabidopsis UVR8 protein
-
Rizzini, L., Favory, J.J., Cloix, C., Faggionato, D., O’Hara, A., Kaiserli, E., Baumeister, R., Schäfer, E., Nagy, F., Jenkins, G.I., and Ulm, R. (2011). Perception of UV-B by the Arabidopsis UVR8 protein. Science 332: 103-106.
-
(2011)
Science
, vol.332
, pp. 103-106
-
-
Rizzini, L.1
Favory, J.J.2
Cloix, C.3
Faggionato, D.4
O’Hara, A.5
Kaiserli, E.6
Baumeister, R.7
Schäfer, E.8
Nagy, F.9
Jenkins, G.I.10
Ulm, R.11
-
59
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., and Smyth, G.K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
60
-
-
0037010172
-
Chlamydomonas, a model system for studying the assembly and dynamics of photosynthetic complexes
-
Rochaix, J.D. (2002). Chlamydomonas, a model system for studying the assembly and dynamics of photosynthetic complexes. FEBS Lett. 529: 34-38.
-
(2002)
FEBS Lett
, vol.529
, pp. 34-38
-
-
Rochaix, J.D.1
-
61
-
-
0030909289
-
UV-B as an environmental factor in plant life: Stress and regulation
-
Rozema, J., van de Staaij, J., Björn, L.O., and Caldwell, M. (1997). UV-B as an environmental factor in plant life: stress and regulation. Trends Ecol. Evol. (Amst.) 12: 22-28.
-
(1997)
Trends Ecol. Evol. (Amst.)
, vol.12
, pp. 22-28
-
-
Rozema, J.1
Van de Staaij, J.2
Björn, L.O.3
Caldwell, M.4
-
62
-
-
84924858796
-
Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing
-
Schierenbeck, L., Ries, D., Rogge, K., Grewe, S., Weisshaar, B., and Kruse, O. (2015). Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing. BMC Genomics 16: 57.
-
(2015)
BMC Genomics
, vol.16
, pp. 57
-
-
Schierenbeck, L.1
Ries, D.2
Rogge, K.3
Grewe, S.4
Weisshaar, B.5
Kruse, O.6
-
63
-
-
85047693636
-
Turnover of thylakoid photosystem II proteins during photoinhibition of Chlamydomonas reinhardtii
-
Schuster, G., Timberg, R., and Ohad, I. (1988). Turnover of thylakoid photosystem II proteins during photoinhibition of Chlamydomonas reinhardtii. Eur. J. Biochem. 177: 403-410.
-
(1988)
Eur. J. Biochem
, vol.177
, pp. 403-410
-
-
Schuster, G.1
Timberg, R.2
Ohad, I.3
-
64
-
-
0031893765
-
High-efficiency transformation of Chlamydomonas reinhardtii by electroporation
-
Shimogawara, K., Fujiwara, S., Grossman, A., and Usuda, H. (1998). High-efficiency transformation of Chlamydomonas reinhardtii by electroporation. Genetics 148: 1821-1828.
-
(1998)
Genetics
, vol.148
, pp. 1821-1828
-
-
Shimogawara, K.1
Fujiwara, S.2
Grossman, A.3
Usuda, H.4
-
65
-
-
72049098805
-
The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation
-
Stracke, R., Favory, J.J., Gruber, H., Bartelniewoehner, L., Bartels, S., Binkert, M., Funk, M., Weisshaar, B., and Ulm, R. (2010). The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation. Plant Cell Environ. 33: 88-103.
-
(2010)
Plant Cell Environ
, vol.33
, pp. 88-103
-
-
Stracke, R.1
Favory, J.J.2
Gruber, H.3
Bartelniewoehner, L.4
Bartels, S.5
Binkert, M.6
Funk, M.7
Weisshaar, B.8
Ulm, R.9
-
66
-
-
78650964757
-
Photoprotection in plants: A new light on photosystem II damage
-
Takahashi, S., and Badger, M.R. (2011). Photoprotection in plants: a new light on photosystem II damage. Trends Plant Sci. 16: 53-60.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 53-60
-
-
Takahashi, S.1
Badger, M.R.2
-
67
-
-
77954249325
-
The solar action spectrum of photosystem II damage
-
Takahashi, S., Milward, S.E., Yamori, W., Evans, J.R., Hillier, W., and Badger, M.R. (2010). The solar action spectrum of photosystem II damage. Plant Physiol. 153: 988-993.
-
(2010)
Plant Physiol
, vol.153
, pp. 988-993
-
-
Takahashi, S.1
Milward, S.E.2
Yamori, W.3
Evans, J.R.4
Hillier, W.5
Badger, M.R.6
-
68
-
-
84890261466
-
The UVR8 UV-B photoreceptor: Perception, signaling and response
-
Tilbrook, K., Arongaus, A.B., Binkert, M., Heijde, M., Yin, R., and Ulm, R. (2013). The UVR8 UV-B photoreceptor: perception, signaling and response. Arabidopsis Book 11: e0164.
-
(2013)
Arabidopsis Book
, vol.11
-
-
Tilbrook, K.1
Arongaus, A.B.2
Binkert, M.3
Heijde, M.4
Yin, R.5
Ulm, R.6
-
69
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., and Salzberg, S.L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
70
-
-
0842299514
-
Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis
-
Ulm, R., Baumann, A., Oravecz, A., Máté, Z., Adám, E., Oakeley, E.J., Schäfer, E., and Nagy, F. (2004). Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. Proc. Natl. Acad. Sci. USA 101: 1397-1402.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1397-1402
-
-
Ulm, R.1
Baumann, A.2
Oravecz, A.3
Máté, Z.4
Adám, E.5
Oakeley, E.J.6
Schäfer, E.7
Nagy, F.8
-
71
-
-
84907053567
-
Photoreceptor-mediated bending towards UV-B in Arabidopsis
-
Vandenbussche, F., Tilbrook, K., Fierro, A.C., Marchal, K., Poelman, D., Van Der Straeten, D., and Ulm, R. (2014). Photoreceptor-mediated bending towards UV-B in Arabidopsis. Mol. Plant 7: 1041-1052.
-
(2014)
Mol. Plant
, vol.7
, pp. 1041-1052
-
-
Vandenbussche, F.1
Tilbrook, K.2
Fierro, A.C.3
Marchal, K.4
Poelman, D.5
Van Der Straeten, D.6
Ulm, R.7
-
72
-
-
79960269048
-
Increased exposure to UV-B radiation during early development leads to enhanced photoprotection and improved long-term performance in Lactuca sativa
-
Wargent, J.J., Elfadly, E.M., Moore, J.P., and Paul, N.D. (2011). Increased exposure to UV-B radiation during early development leads to enhanced photoprotection and improved long-term performance in Lactuca sativa. Plant Cell Environ. 34: 1401-1413.
-
(2011)
Plant Cell Environ
, vol.34
, pp. 1401-1413
-
-
Wargent, J.J.1
Elfadly, E.M.2
Moore, J.P.3
Paul, N.D.4
-
73
-
-
84927715963
-
Acclimation to UV-B radiation and visible light in Lactuca sativa involves up-regulation of photosynthetic performance and orchestration of metabolome-wide responses
-
Wargent, J.J., Nelson, B.C., McGhie, T.K., and Barnes, P.W. (2015). Acclimation to UV-B radiation and visible light in Lactuca sativa involves up-regulation of photosynthetic performance and orchestration of metabolome-wide responses. Plant Cell Environ. 38: 929-940.
-
(2015)
Plant Cell Environ
, vol.38
, pp. 929-940
-
-
Wargent, J.J.1
Nelson, B.C.2
McGhie, T.K.3
Barnes, P.W.4
-
74
-
-
84862776742
-
Structural basis of ultraviolet-B perception by UVR8
-
Wu, D., Hu, Q., Yan, Z., Chen, W., Yan, C., Huang, X., Zhang, J., Yang, P., Deng, H., Wang, J., Deng, X., and Shi, Y. (2012). Structural basis of ultraviolet-B perception by UVR8. Nature 484: 214-219.
-
(2012)
Nature
, vol.484
, pp. 214-219
-
-
Wu, D.1
Hu, Q.2
Yan, Z.3
Chen, W.4
Yan, C.5
Huang, X.6
Zhang, J.7
Yang, P.8
Deng, H.9
Wang, J.10
Deng, X.11
Shi, Y.12
-
75
-
-
79958000656
-
D1 protein turnover is involved in protection of Photosystem II against UV-B induced damage in the cyanobacterium Arthrospira (Spirulina) platensis
-
Wu, H., Abasova, L., Cheregi, O., Deák, Z., Gao, K., and Vass, I. (2011). D1 protein turnover is involved in protection of Photosystem II against UV-B induced damage in the cyanobacterium Arthrospira (Spirulina) platensis. J. Photochem. Photobiol. B 104: 320-325.
-
(2011)
J. Photochem. Photobiol. B
, vol.104
, pp. 320-325
-
-
Wu, H.1
Abasova, L.2
Cheregi, O.3
Deák, Z.4
Gao, K.5
Vass, I.6
-
76
-
-
27744474619
-
COP1-from plant photomorphogenesis to mammalian tumorigenesis
-
Yi, C., and Deng, X.W. (2005). COP1-from plant photomorphogenesis to mammalian tumorigenesis. Trends Cell Biol. 15: 618-625.
-
(2005)
Trends Cell Biol
, vol.15
, pp. 618-625
-
-
Yi, C.1
Deng, X.W.2
-
77
-
-
84922987941
-
Two distinct domains of the UVR8 photoreceptor interact with COP1 to initiate UV-B signaling in Arabidopsis
-
Yin, R., Arongaus, A.B., Binkert, M., and Ulm, R. (2015). Two distinct domains of the UVR8 photoreceptor interact with COP1 to initiate UV-B signaling in Arabidopsis. Plant Cell 27: 202-213.
-
(2015)
Plant Cell
, vol.27
, pp. 202-213
-
-
Yin, R.1
Arongaus, A.B.2
Binkert, M.3
Ulm, R.4
-
78
-
-
84988044679
-
Dynamic crystallography reveals early signalling events in ultraviolet photoreceptor UVR8
-
Zeng, X., Ren, Z., Wu, Q., Fan, J., Peng, P.-P., Tang, K., Zhang, R., Zhao, K.-H., and Yang, X. (2015). Dynamic crystallography reveals early signalling events in ultraviolet photoreceptor UVR8. Nat. Plants 1: 14006.
-
(2015)
Nat. Plants
, vol.1
-
-
Zeng, X.1
Ren, Z.2
Wu, Q.3
Fan, J.4
Peng, P.-P.5
Tang, K.6
Zhang, R.7
Zhao, K.-H.8
Yang, X.9
-
79
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang, Y. (2008). I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9: 40.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
|