-
1
-
-
0037276155
-
A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits
-
Alkemar G, Nygard O (2003) A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits. RNA 9(1):20-24.
-
(2003)
RNA
, vol.9
, Issue.1
, pp. 20-24
-
-
Alkemar, G.1
Nygard, O.2
-
2
-
-
36949048920
-
Central Dogma Reversed
-
Anonymous
-
Anonymous (1970). "Central Dogma Reversed." Nature 226(5252): 1198-1199.
-
(1970)
Nature
, vol.226
, Issue.5252
, pp. 1198-1199
-
-
-
3
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban N, Nissen P et al (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289(5481):905-920.
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
-
4
-
-
0019786340
-
Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs
-
Branlant C, Krol A et al (1981) Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs. Nucleic Acids Res 9(17):4303-4324.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.17
, pp. 4303-4324
-
-
Branlant, C.1
Krol, A.2
-
6
-
-
2942571539
-
The comparative RNA web (CRW) site: An online data-base of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S et al (2002) The comparative RNA web (CRW) site: an online data-base of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3(1):2.
-
(2002)
BMC Bioinformatics
, vol.3
, Issue.1
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
-
7
-
-
0029796982
-
RNA tertiary structure mediation by adenosine platforms
-
Cate JH, Gooding AR et al (1996) RNA tertiary structure mediation by adenosine platforms. Science 273(5282):1696-1699.
-
(1996)
Science
, vol.273
, Issue.5282
, pp. 1696-1699
-
-
Cate, J.H.1
Gooding, A.R.2
-
8
-
-
0024214064
-
Conserved sequences and structures of group I introns: Building an active site for RNA catalysis-a review
-
Cech TR (1988) Conserved sequences and structures of group I introns: building an active site for RNA catalysis-a review. Gene 73(2):259-271.
-
(1988)
Gene
, vol.73
, Issue.2
, pp. 259-271
-
-
Cech, T.R.1
-
9
-
-
0032566329
-
A functional ribosomal RNA tertiary structure involves a base triple interaction
-
Conn GL, Gutell RR et al (1998) A functional ribosomal RNA tertiary structure involves a base triple interaction. Biochem 37(34):11980-11988.
-
(1998)
Biochem
, vol.37
, Issue.34
, pp. 11980-11988
-
-
Conn, G.L.1
Gutell, R.R.2
-
11
-
-
70449209123
-
On protein synthesis
-
Crick FH (1958) On protein synthesis. Symp Soc Exp Biol 12:138-163.
-
(1958)
Symp Soc Exp Biol
, vol.12
, pp. 138-163
-
-
Crick, F.H.1
-
12
-
-
0014378880
-
The origin of the genetic code
-
Crick FH (1968) The origin of the genetic code. J Mol Biol 38(3):367-379.
-
(1968)
J Mol Biol
, vol.38
, Issue.3
, pp. 367-379
-
-
Crick, F.H.1
-
14
-
-
0035919726
-
AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16S and 23S rRNA helices
-
Elgavish T, Cannone JJ et al (2001) AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16S and 23S rRNA helices. J Mol Biol 310(4):735-753.
-
(2001)
J Mol Biol
, vol.310
, Issue.4
, pp. 735-753
-
-
Elgavish, T.1
Cannone, J.J.2
-
15
-
-
0016792988
-
5S RNA secondary structure
-
Fox GE, Woese CR (1975) 5S RNA secondary structure. Nature 256(5517):505-507.
-
(1975)
Nature
, vol.256
, Issue.5517
, pp. 505-507
-
-
Fox, G.E.1
Woese, C.R.2
-
16
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
Database Issue
-
Gardner PP, Daub J et al (2009) Rfam: updates to the RNA families database. Nucleic Acids Res 37(Database issue):D136-D140.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D136-D140
-
-
Gardner, P.P.1
Daub, J.2
-
17
-
-
0028916219
-
Identification of base-triples in RNA using comparative sequence analysis
-
Gautheret D, Damberger SH et al (1995) Identification of base-triples in RNA using comparative sequence analysis. J Mol Biol 248(1):27-43.
-
(1995)
J Mol Biol
, vol.248
, Issue.1
, pp. 27-43
-
-
Gautheret, D.1
Damberger, S.H.2
-
18
-
-
0027956537
-
A major family of motifs involving G.A mismatches in ribosomal RNA
-
Gautheret D, Konings D et al (1994) A major family of motifs involving G.A mismatches in ribosomal RNA. J Mol Biol 242(1):1-8.
-
(1994)
J Mol Biol
, vol.242
, Issue.1
, pp. 1-8
-
-
Gautheret, D.1
Konings, D.2
-
19
-
-
0019887387
-
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes
-
Glotz C, Zwieb C et al (1981) Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes. Nucleic Acids Res 9(14):3287-3306.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.14
, pp. 3287-3306
-
-
Glotz, C.1
Zwieb, C.2
-
20
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C, Gardiner K et al (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35(3 Pt 2):849-857.
-
(1983)
Cell
, vol.35
, Issue.3
, pp. 849-857
-
-
Guerrier-takada, C.1
Gardiner, K.2
-
21
-
-
0027236838
-
Comparative studies of RNA: Inferring higher-order structure from patterns of sequence variation
-
Gutell R (1993) Comparative studies of RNA: inferring higher-order structure from patterns of sequence variation. Curr Opin Struct Biol 3:313-322.
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 313-322
-
-
Gutell, R.1
-
22
-
-
0001791833
-
Comparative sequence analysis and the structure of 16S and 23S rRNA
-
Zimmermann RA, Dahlberg AE (eds), CRC Press, Boca Raton, FL
-
Gutell RR (1996) Comparative sequence analysis and the structure of 16S and 23S rRNA. In: Zimmermann RA, Dahlberg AE (eds) Ribosomal RNA: Structure, Evolution, Processing, and Function in Protein Biosynthesis. CRC Press, Boca Raton, FL, pp 111-128.
-
(1996)
Ribosomal RNA: Structure, Evolution, Processing, and Function in Protein Biosynthesis
, pp. 111-128
-
-
Gutell, R.R.1
-
23
-
-
0034405491
-
A story: Unpaired adenosine bases in ribosomal RNAs
-
Gutell RR, Cannone JJ et al (2000) A story: unpaired adenosine bases in ribosomal RNAs. J Mol Biol 304(3):335-354.
-
(2000)
J Mol Biol
, vol.304
, Issue.3
, pp. 335-354
-
-
Gutell, R.R.1
Cannone, J.J.2
-
24
-
-
0028261409
-
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell RR, Larsen N et al (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58(1):10-26.
-
(1994)
Microbiol Rev
, vol.58
, Issue.1
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
-
25
-
-
0036600570
-
The accuracy of ribosomal RNA comparative structure models
-
Gutell RR, Lee JC et al (2002) The accuracy of ribosomal RNA comparative structure models. Curr Opin Struct Biol 12(3):301-310.
-
(2002)
Curr Opin Struct Biol
, vol.12
, Issue.3
, pp. 301-310
-
-
Gutell, R.R.1
Lee, J.C.2
-
26
-
-
0022719007
-
Higher order structure in ribosomal RNA
-
Gutell RR, Noller HF et al (1986) Higher order structure in ribosomal RNA. EMBO J 5(5):1111-1113.
-
(1986)
EMBO J
, vol.5
, Issue.5
, pp. 1111-1113
-
-
Gutell, R.R.1
Noller, H.F.2
-
27
-
-
0026466830
-
Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
-
Gutell RR, Power A et al (1992) Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res 20(21):5785-5795.
-
(1992)
Nucleic Acids Res
, vol.20
, Issue.21
, pp. 5785-5795
-
-
Gutell, R.R.1
Power, A.2
-
29
-
-
0025191217
-
Higher order structural elements in ribosomal RNAs: Pseudo-knots and the use of noncanonical pairs
-
Gutell RR, Woese CR (1990) Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs. Proc Natl Acad Sci USA 87(2):663-667.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, Issue.2
, pp. 663-667
-
-
Gutell, R.R.1
Woese, C.R.2
-
31
-
-
80052982281
-
The dynamic nature of RNA as key to understanding riboswitch mechanisms
-
Haller A, Souliere MF et al (2011) The dynamic nature of RNA as key to understanding riboswitch mechanisms. Acc Chem Res 44(12):1339-1348.
-
(2011)
Acc Chem Res
, vol.44
, Issue.12
, pp. 1339-1348
-
-
Haller, A.1
Souliere, M.F.2
-
33
-
-
0001195354
-
Structure of a ribonucleic acid
-
Holley RW, Apgar J et al (1965) Structure of a ribonucleic acid. Science 147:1462-1465.
-
(1965)
Science
, vol.147
, pp. 1462-1465
-
-
Holley, R.W.1
Apgar, J.2
-
34
-
-
0024286617
-
The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme
-
James BD, Olsen GJ et al (1988) The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme. Cell 52(1):19-26.
-
(1988)
Cell
, vol.52
, Issue.1
, pp. 19-26
-
-
James, B.D.1
Olsen, G.J.2
-
35
-
-
0016911248
-
Three-dimensional structure of transfer RNA
-
Kim SH (1976) Three-dimensional structure of transfer RNA. Prog Nucleic Acid Res Mol Biol 17:181-216.
-
(1976)
Prog Nucleic Acid Res Mol Biol
, vol.17
, pp. 181-216
-
-
Kim, S.H.1
-
36
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim SH, Suddath FL et al (1974) Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185(149):435-440.
-
(1974)
Science
, vol.185
, Issue.149
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
-
37
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger K, Grabowski PJ et al (1982) Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31(1):147-157.
-
(1982)
Cell
, vol.31
, Issue.1
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
-
38
-
-
0037258776
-
The lonepair triloop: A new motif in RNA structure
-
Lee JC, Cannone JJ et al (2003) The lonepair triloop: a new motif in RNA structure. J Mol Biol 325(1):65-83.
-
(2003)
J Mol Biol
, vol.325
, Issue.1
, pp. 65-83
-
-
Lee, J.C.1
Cannone, J.J.2
-
39
-
-
0014688034
-
Detailed molecular model for transfer ribonucleic acid
-
Levitt M (1969) Detailed molecular model for transfer ribonucleic acid. Nature 224(221):759-763.
-
(1969)
Nature
, vol.224
, Issue.221
, pp. 759-763
-
-
Levitt, M.1
-
40
-
-
0013997322
-
On the nucleotide sequence of yeast tyrosine transfer RNA
-
Madison JT, Everett GA et al (1966) On the nucleotide sequence of yeast tyrosine transfer RNA. Cold Spring Harb Symp Quant Biol 31:409-416.
-
(1966)
Cold Spring Harb Symp Quant Biol
, vol.31
, pp. 409-416
-
-
Madison, J.T.1
Everett, G.A.2
-
41
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns-a review
-
Michel F, Umesono K et al (1989) Comparative and functional anatomy of group II catalytic introns-a review. Gene 82(1):5-30.
-
(1989)
Gene
, vol.82
, Issue.1
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
-
42
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F, Westhof E (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216(3):585-610.
-
(1990)
J Mol Biol
, vol.216
, Issue.3
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
43
-
-
0032870204
-
Structural motifs in RNA
-
Moore PB (1999) Structural motifs in RNA. Annu Rev Biochem 68:287-300.
-
(1999)
Annu Rev Biochem
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
45
-
-
33748184856
-
Biochemical characterization of the ribosomal decoding site
-
Noller HF (2006) Biochemical characterization of the ribosomal decoding site. Biochimie 88(8):935-941.
-
(2006)
Biochimie
, vol.88
, Issue.8
, pp. 935-941
-
-
Noller, H.F.1
-
46
-
-
0015424835
-
Functional modification of 16S ribosomal RNA by kethoxal
-
Noller HF, Chaires JB (1972) Functional modification of 16S ribosomal RNA by kethoxal. Proc Natl Acad Sci USA 69(11):3115-3118.
-
(1972)
Proc Natl Acad Sci USA
, vol.69
, Issue.11
, pp. 3115-3118
-
-
Noller, H.F.1
Chaires, J.B.2
-
47
-
-
0019888579
-
Secondary structure model for 23S ribosomal RNA
-
Noller HF, Kop J et al (1981) Secondary structure model for 23S ribosomal RNA. Nucleic Acids Res 9(22):6167-6189.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.22
, pp. 6167-6189
-
-
Noller, H.F.1
Kop, J.2
-
48
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
Ogle JM, Brodersen DE et al (2001) Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292(5518):897-902.
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
-
50
-
-
0014369024
-
Evolution of the genetic apparatus
-
Orgel LE (1968) Evolution of the genetic apparatus. J Mol Biol 38(3):381-393.
-
(1968)
J Mol Biol
, vol.38
, Issue.3
, pp. 381-393
-
-
Orgel, L.E.1
-
52
-
-
0016912825
-
Transfer RNA: Molecular structure, sequence, and properties
-
Rich A, RajBhandary UL (1976) Transfer RNA: molecular structure, sequence, and properties. Annu Rev Biochem 45:805-860.
-
(1976)
Annu Rev Biochem
, vol.45
, pp. 805-860
-
-
Rich, A.1
RajBhandary, U.L.2
-
53
-
-
0016354122
-
Structure of yeast phenylalanine tRNA at 3 A resolution
-
Robertus JD, Ladner JE et al (1974) Structure of yeast phenylalanine tRNA at 3 A resolution. Nature 250(5467):546-551.
-
(1974)
Nature
, vol.250
, Issue.5467
, pp. 546-551
-
-
Robertus, J.D.1
Ladner, J.E.2
-
54
-
-
0025944831
-
A conserved secondary structure for telomerase RNA
-
Romero DP, Blackburn EH (1991) A conserved secondary structure for telomerase RNA. Cell 67(2):343-353.
-
(1991)
Cell
, vol.67
, Issue.2
, pp. 343-353
-
-
Romero, D.P.1
Blackburn, E.H.2
-
55
-
-
0025082690
-
Effects of GA mismatches on the structure and thermodynamics of RNA internal loops
-
SantaLucia J Jr, Kierzek R et al (1990) Effects of GA mismatches on the structure and thermodynamics of RNA internal loops. Biochem 29(37):8813-8819.
-
(1990)
Biochem
, vol.29
, Issue.37
, pp. 8813-8819
-
-
SantaLucia, J.1
Kierzek, R.2
-
56
-
-
84862523226
-
Structural constraints identified with covariation analysis in ribosomal RNA
-
Shang L, Xu W et al (2012) Structural constraints identified with covariation analysis in ribosomal RNA. PLoS ONE, 7(6):e39383.
-
(2012)
PLoS ONE
, vol.7
, Issue.6
, pp. e39383
-
-
Shang, L.1
Xu, W.2
-
57
-
-
0019743220
-
A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits
-
Stiegler P, Carbon P et al (1981) A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits. Eur J Biochem 120(3):487-495.
-
(1981)
Eur J Biochem
, vol.120
, Issue.3
, pp. 487-495
-
-
Stiegler, P.1
Carbon, P.2
-
58
-
-
0020489743
-
Adenine-guanine base pairing ribosomal RNA
-
Traub W, Sussman JL (1982) Adenine-guanine base pairing ribosomal RNA. Nucleic Acids Res 10(8):2701-2708.
-
(1982)
Nucleic Acids Res
, vol.10
, Issue.8
, pp. 2701-2708
-
-
Traub, W.1
Sussman, J.L.2
-
59
-
-
0023973247
-
CUUCGG hairpins: Extraordinarily stable RNA secondary structures associated with various biochemical processes
-
Tuerk C, Gauss P et al (1988) CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc Natl Acad Sci USA 85(5):1364-1368.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, Issue.5
, pp. 1364-1368
-
-
Tuerk, C.1
Gauss, P.2
-
60
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE et al (2000) Structure of the 30S ribosomal subunit. Nature 407(6802):327-339.
-
(2000)
Nature
, vol.407
, Issue.6802
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
-
62
-
-
0018936473
-
Secondary structure model for bacterial 16S ribosomal RNA: Phylogenetic, enzymatic and chemical evidence
-
Woese CR, Magrum LJ et al (1980) Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res 8(10):2275-2293.
-
(1980)
Nucleic Acids Res
, vol.8
, Issue.10
, pp. 2275-2293
-
-
Woese, C.R.1
Magrum, L.J.2
-
63
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops"
-
Woese CR, Winker S et al (1990) Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops". Proc Natl Acad Sci USA 87(21):8467-8471.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, Issue.21
, pp. 8467-8471
-
-
Woese, C.R.1
Winker, S.2
-
64
-
-
0024368074
-
Structure and function of signal recognition particle RNA
-
Zwieb C (1989) Structure and function of signal recognition particle RNA. Prog Nucleic Acid Res Mol Biol 37:207-234.
-
(1989)
Prog Nucleic Acid Res Mol Biol
, vol.37
, pp. 207-234
-
-
Zwieb, C.1
-
65
-
-
0019878165
-
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species
-
Zwieb C, Glotz C et al (1981) Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res 9(15):3621-3640.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.15
, pp. 3621-3640
-
-
Zwieb, C.1
Glotz, C.2
|