메뉴 건너뛰기




Volumn 99, Issue 7, 2016, Pages 5155-5172

Identification of surface-associated proteins of Bifidobacterium animalis ssp. lactis KLDS 2.0603 by enzymatic shaving

Author keywords

Interaction between probiotics and host; Probiotics; Shotgun proteomics; Surface proteins

Indexed keywords

AZIDE; BACTERIAL PROTEIN; MEMBRANE PROTEIN; PROPIDIUM IODIDE; PROPIDIUM MONOAZIDE; TRYPSIN;

EID: 84964691191     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2015-10581     Document Type: Article
Times cited : (17)

References (70)
  • 1
    • 0036192260 scopus 로고    scopus 로고
    • Signal peptides of secreted proteins of the archaeon Sulfolobus solfataricus: A genomic survey
    • Albers S.V., Driessen A.M. Signal peptides of secreted proteins of the archaeon Sulfolobus solfataricus: A genomic survey. Arch. Microbiol. 2002, 177:209-216.
    • (2002) Arch. Microbiol. , vol.177 , pp. 209-216
    • Albers, S.V.1    Driessen, A.M.2
  • 3
    • 84894536387 scopus 로고    scopus 로고
    • Ribosomal protein L13a deficiency in macrophages promotes atherosclerosis by limiting translation control-dependent retardation of inflammation
    • Basu A., Poddar D., Robinet P., Smith J.D., Febbraio M., Baldwin W.M., Mazumder B. Ribosomal protein L13a deficiency in macrophages promotes atherosclerosis by limiting translation control-dependent retardation of inflammation. Arterioscler. Thromb. Vasc. Biol. 2014, 34:533-542.
    • (2014) Arterioscler. Thromb. Vasc. Biol. , vol.34 , pp. 533-542
    • Basu, A.1    Poddar, D.2    Robinet, P.3    Smith, J.D.4    Febbraio, M.5    Baldwin, W.M.6    Mazumder, B.7
  • 5
    • 3042692704 scopus 로고    scopus 로고
    • Feature-based prediction of non-classical and leaderless protein secretion. Protein engineering, design & selection
    • Bendtsen J.D., Jensen L.J., Blom N., Von Heijne G., Brunak S. Feature-based prediction of non-classical and leaderless protein secretion. Protein engineering, design & selection. Protein Eng. Des. Sel. 2004, 17:349-356. a.
    • (2004) Protein Eng. Des. Sel. , vol.17 , pp. 349-356
    • Bendtsen, J.D.1    Jensen, L.J.2    Blom, N.3    Von Heijne, G.4    Brunak, S.5
  • 7
    • 29644437923 scopus 로고    scopus 로고
    • GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: Potential role in interactions with the host and the gastric pathogen Helicobacter pylori
    • Bergonzelli G.E., Granato D., Pridmore R.D., Marvin-Guy L.F., Donnicola D., Corthesy-Theulaz I.E. GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: Potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect. Immun. 2006, 74:425-434.
    • (2006) Infect. Immun. , vol.74 , pp. 425-434
    • Bergonzelli, G.E.1    Granato, D.2    Pridmore, R.D.3    Marvin-Guy, L.F.4    Donnicola, D.5    Corthesy-Theulaz, I.E.6
  • 8
    • 50449108061 scopus 로고    scopus 로고
    • Rapid, cultivation-independent assessment of microbial viability in drinking water
    • Berney M., Vital M., Hülshoff I., Weilenmann H.-U., Egli T., Hammes F. Rapid, cultivation-independent assessment of microbial viability in drinking water. Water Res. 2008, 42:4010-4018.
    • (2008) Water Res. , vol.42 , pp. 4010-4018
    • Berney, M.1    Vital, M.2    Hülshoff, I.3    Weilenmann, H.-U.4    Egli, T.5    Hammes, F.6
  • 13
    • 77953221206 scopus 로고    scopus 로고
    • DnaK from Bifidobacterium animalis ssp. lactis is a surface-exposed human plasminogen receptor upregulated in response to bile salts
    • Candela M., Centanni M., Fiori J., Biagi E., Turroni S., Orrico C., Bergmann S., Hammerschmidt S., Brigidi P. DnaK from Bifidobacterium animalis ssp. lactis is a surface-exposed human plasminogen receptor upregulated in response to bile salts. Microbiology 2010, 156:1609-1618.
    • (2010) Microbiology , vol.156 , pp. 1609-1618
    • Candela, M.1    Centanni, M.2    Fiori, J.3    Biagi, E.4    Turroni, S.5    Orrico, C.6    Bergmann, S.7    Hammerschmidt, S.8    Brigidi, P.9
  • 14
    • 84892898063 scopus 로고    scopus 로고
    • Proteomic profiling of the surface-exposed cell envelope proteins of Caulobacter crescentus
    • Cao Y., Bazemore-Walker C.R. Proteomic profiling of the surface-exposed cell envelope proteins of Caulobacter crescentus. J. Proteomics 2014, 97:187-194.
    • (2014) J. Proteomics , vol.97 , pp. 187-194
    • Cao, Y.1    Bazemore-Walker, C.R.2
  • 15
    • 79953770681 scopus 로고    scopus 로고
    • Enzymatic shaving of the tegument surface of live schistosomes for proteomic analysis: A rational approach to select vaccine candidates
    • Castro-Borges W., Dowle A., Curwen R.S., Thomas-Oates J., Wilson R.A. Enzymatic shaving of the tegument surface of live schistosomes for proteomic analysis: A rational approach to select vaccine candidates. PLoS Negl. Trop. Dis. 2011, 5:e993.
    • (2011) PLoS Negl. Trop. Dis. , vol.5
    • Castro-Borges, W.1    Dowle, A.2    Curwen, R.S.3    Thomas-Oates, J.4    Wilson, R.A.5
  • 16
    • 84870733944 scopus 로고    scopus 로고
    • Pili of gram-positive bacteria: roles in host colonization
    • Danne C., Dramsi S. Pili of gram-positive bacteria: roles in host colonization. Res. Microbiol. 2012, 163:645-658.
    • (2012) Res. Microbiol. , vol.163 , pp. 645-658
    • Danne, C.1    Dramsi, S.2
  • 17
    • 84872668156 scopus 로고    scopus 로고
    • Assessment of probiotic viability during cheddar cheese manufacture and ripening using propidium monoazide-PCR quantification
    • Desfossés-Foucault E., Dussault-Lepage V., Le Boucher C., Savard P., Lapointe G., Roy D. Assessment of probiotic viability during cheddar cheese manufacture and ripening using propidium monoazide-PCR quantification. Front. Microbiol. 2012, 3:350.
    • (2012) Front. Microbiol. , vol.3 , pp. 350
    • Desfossés-Foucault, E.1    Dussault-Lepage, V.2    Le Boucher, C.3    Savard, P.4    Lapointe, G.5    Roy, D.6
  • 20
    • 85046982764 scopus 로고    scopus 로고
    • Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection
    • Fanning S., Hall L.J., van Sinderen D. Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection. Gut Microbes 2012, 3:420-425. b.
    • (2012) Gut Microbes , vol.3 , pp. 420-425
    • Fanning, S.1    Hall, L.J.2    van Sinderen, D.3
  • 22
    • 78650090945 scopus 로고    scopus 로고
    • Identification and quantification of viable Bifidobacterium breve strain Yakult in human faeces by using strain-specific primers and propidium monoazide
    • Fujimoto J., Tanigawa K., Kudo Y., Makino H., Watanabe K. Identification and quantification of viable Bifidobacterium breve strain Yakult in human faeces by using strain-specific primers and propidium monoazide. J. Appl. Microbiol. 2011, 110:209-217.
    • (2011) J. Appl. Microbiol. , vol.110 , pp. 209-217
    • Fujimoto, J.1    Tanigawa, K.2    Kudo, Y.3    Makino, H.4    Watanabe, K.5
  • 23
    • 79958094511 scopus 로고    scopus 로고
    • The extracellular proteome of Bifidobacterium animalis ssp. lactis BB-12 reveals proteins with putative roles in probiotic effects
    • Gilad O., Svensson B., Viborg A.H., Stuer-Lauridsen B., Jacobsen S. The extracellular proteome of Bifidobacterium animalis ssp. lactis BB-12 reveals proteins with putative roles in probiotic effects. Proteomics 2011, 11:2503-2514. a.
    • (2011) Proteomics , vol.11 , pp. 2503-2514
    • Gilad, O.1    Svensson, B.2    Viborg, A.H.3    Stuer-Lauridsen, B.4    Jacobsen, S.5
  • 24
    • 84876410923 scopus 로고    scopus 로고
    • Anchorless surface associated glycolytic enzymes from Lactobacillus plantarum 299v bind to epithelial cells and extracellular matrix proteins
    • Glenting J., Beck H.C., Vrang A., Riemann H., Ravn P., Hansen A.M., Antonsson M., Ahrne S., Israelsen H., Madsen S. Anchorless surface associated glycolytic enzymes from Lactobacillus plantarum 299v bind to epithelial cells and extracellular matrix proteins. Microbiol. Res. 2013, 168:245-253.
    • (2013) Microbiol. Res. , vol.168 , pp. 245-253
    • Glenting, J.1    Beck, H.C.2    Vrang, A.3    Riemann, H.4    Ravn, P.5    Hansen, A.M.6    Antonsson, M.7    Ahrne, S.8    Israelsen, H.9    Madsen, S.10
  • 27
    • 1842431723 scopus 로고    scopus 로고
    • Cell surface-associated elongation factor Tu mediates the attachment of Lactobacillus johnsonii NCC533 (La1) to human intestinal cells and mucins
    • Granato D., Bergonzelli G.E., Pridmore R.D., Marvin L., Rouvet M., Corthesy-Theulaz I.E. Cell surface-associated elongation factor Tu mediates the attachment of Lactobacillus johnsonii NCC533 (La1) to human intestinal cells and mucins. Infect. Immun. 2004, 72:2160-2169.
    • (2004) Infect. Immun. , vol.72 , pp. 2160-2169
    • Granato, D.1    Bergonzelli, G.E.2    Pridmore, R.D.3    Marvin, L.4    Rouvet, M.5    Corthesy-Theulaz, I.E.6
  • 30
    • 77950517218 scopus 로고    scopus 로고
    • Gel and gel-free proteomics to identify Saccharomyces cerevisiae cell surface proteins
    • Insenser M.R., Hernaez M.L., Nombela C., Molina M., Molero G., Gil C. Gel and gel-free proteomics to identify Saccharomyces cerevisiae cell surface proteins. J. Proteomics 2010, 73:1183-1195.
    • (2010) J. Proteomics , vol.73 , pp. 1183-1195
    • Insenser, M.R.1    Hernaez, M.L.2    Nombela, C.3    Molina, M.4    Molero, G.5    Gil, C.6
  • 31
    • 0030139090 scopus 로고    scopus 로고
    • Improvement of lactose digestion in humans by ingestion of unfermented milk containing Bifidobacterium longum
    • Jiang T., Mustapha A., Savaiano D.A. Improvement of lactose digestion in humans by ingestion of unfermented milk containing Bifidobacterium longum. J. Dairy Sci. 1996, 79:750-757.
    • (1996) J. Dairy Sci. , vol.79 , pp. 750-757
    • Jiang, T.1    Mustapha, A.2    Savaiano, D.A.3
  • 36
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A., Larsson B., Von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 2001, 305:567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 38
    • 76949107790 scopus 로고    scopus 로고
    • Host interactions of probiotic bacterial surface molecules: Comparison with commensals and pathogens
    • Lebeer S., Vanderleyden J., De Keersmaecker S.C. Host interactions of probiotic bacterial surface molecules: Comparison with commensals and pathogens. Nat. Rev. Microbiol. 2010, 8:171-184.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 171-184
    • Lebeer, S.1    Vanderleyden, J.2    De Keersmaecker, S.C.3
  • 39
    • 0034442652 scopus 로고    scopus 로고
    • Identification and immunogenicity of group a Streptococcus culture supernatant proteins
    • Lei B., Mackie S., Lukomski S., Musser J.M. Identification and immunogenicity of group a Streptococcus culture supernatant proteins. Infect. Immun. 2000, 68:6807-6818.
    • (2000) Infect. Immun. , vol.68 , pp. 6807-6818
    • Lei, B.1    Mackie, S.2    Lukomski, S.3    Musser, J.M.4
  • 40
    • 37749043209 scopus 로고    scopus 로고
    • Pili in gram-positive bacteria: Assembly, involvement in colonization and biofilm development
    • Mandlik A., Swierczynski A., Das A., Ton-That H. Pili in gram-positive bacteria: Assembly, involvement in colonization and biofilm development. Trends Microbiol. 2008, 16:33-40.
    • (2008) Trends Microbiol. , vol.16 , pp. 33-40
    • Mandlik, A.1    Swierczynski, A.2    Das, A.3    Ton-That, H.4
  • 41
    • 0036709728 scopus 로고    scopus 로고
    • Probiotics and intestinal health effects: A clinical perspective
    • Marteau P., Seksik P., Jian R. Probiotics and intestinal health effects: A clinical perspective. Br. J. Nutr. 2002, 88(Suppl 1):S51-S57.
    • (2002) Br. J. Nutr. , vol.88 , pp. S51-S57
    • Marteau, P.1    Seksik, P.2    Jian, R.3
  • 46
    • 84862238853 scopus 로고    scopus 로고
    • Another turn of the screw in shaving gram-positive bacteria: Optimization of proteomics surface protein identification in Streptococcus pneumoniae
    • Olaya-Abril A., Gomez-Gascon L., Jimenez-Munguia I., Obando I., Rodriguez-Ortega M.J. Another turn of the screw in shaving gram-positive bacteria: Optimization of proteomics surface protein identification in Streptococcus pneumoniae. J. Proteomics 2012, 75:3733-3746.
    • (2012) J. Proteomics , vol.75 , pp. 3733-3746
    • Olaya-Abril, A.1    Gomez-Gascon, L.2    Jimenez-Munguia, I.3    Obando, I.4    Rodriguez-Ortega, M.J.5
  • 47
    • 84880730624 scopus 로고    scopus 로고
    • Identification of potential new protein vaccine candidates through pan-surfomic analysis of pneumococcal clinical isolates from adults
    • Olaya-Abril A., Jimenez-Munguia I., Gomez-Gascon L., Obando I., Rodriguez-Ortega M.J. Identification of potential new protein vaccine candidates through pan-surfomic analysis of pneumococcal clinical isolates from adults. PLoS ONE 2013, 8:e70365.
    • (2013) PLoS ONE , vol.8
    • Olaya-Abril, A.1    Jimenez-Munguia, I.2    Gomez-Gascon, L.3    Obando, I.4    Rodriguez-Ortega, M.J.5
  • 49
    • 0022003173 scopus 로고
    • Interaction of bifidobacterial lipoteichoic acid with human intestinal epithelial cells
    • Op den Camp H.J., Oosterhof A., Veerkamp J.H. Interaction of bifidobacterial lipoteichoic acid with human intestinal epithelial cells. Infect. Immun. 1985, 47:332-334.
    • (1985) Infect. Immun. , vol.47 , pp. 332-334
    • Op den Camp, H.J.1    Oosterhof, A.2    Veerkamp, J.H.3
  • 51
    • 0037317228 scopus 로고    scopus 로고
    • Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • Rappsilber J., Ishihama Y., Mann M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem. 2003, 75:663-670.
    • (2003) Anal. Chem. , vol.75 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 54
    • 84873705655 scopus 로고    scopus 로고
    • Adaptation of bifidobacteria to the gastrointestinal tract and functional consequences
    • Sánchez B., Ruiz L., Gueimonde M., Ruas-Madiedo P., Margolles A. Adaptation of bifidobacteria to the gastrointestinal tract and functional consequences. Pharmacol. Res. 2013, 69:127-136.
    • (2013) Pharmacol. Res. , vol.69 , pp. 127-136
    • Sánchez, B.1    Ruiz, L.2    Gueimonde, M.3    Ruas-Madiedo, P.4    Margolles, A.5
  • 55
    • 78049494627 scopus 로고    scopus 로고
    • Extracellular proteins secreted by probiotic bacteria as mediators of effects that promote mucosa-bacteria interactions
    • Sánchez B., Urdaci M.C., Margolles A. Extracellular proteins secreted by probiotic bacteria as mediators of effects that promote mucosa-bacteria interactions. Microbiology 2010, 156:3232-3242.
    • (2010) Microbiology , vol.156 , pp. 3232-3242
    • Sánchez, B.1    Urdaci, M.C.2    Margolles, A.3
  • 58
    • 0034494479 scopus 로고    scopus 로고
    • Effects of milk-derived bioactives: An overview
    • Shah N.P. Effects of milk-derived bioactives: An overview. Br. J. Nutr. 2000, 84(Suppl 1):S3-S10.
    • (2000) Br. J. Nutr. , vol.84 , pp. S3-S10
    • Shah, N.P.1
  • 59
    • 84873648816 scopus 로고    scopus 로고
    • Fermented milks and milk products as functional foods-A review
    • Shiby V.K., Mishra H.N. Fermented milks and milk products as functional foods-A review. Crit. Rev. Food Sci. Nutr. 2013, 53:482-496.
    • (2013) Crit. Rev. Food Sci. Nutr. , vol.53 , pp. 482-496
    • Shiby, V.K.1    Mishra, H.N.2
  • 60
    • 77952372626 scopus 로고    scopus 로고
    • Improved accuracy of cell surface shaving proteomics in Staphylococcus aureus using a false-positive control
    • Solis N., Larsen M.R., Cordwell S.J. Improved accuracy of cell surface shaving proteomics in Staphylococcus aureus using a false-positive control. Proteomics 2010, 10:2037-2049.
    • (2010) Proteomics , vol.10 , pp. 2037-2049
    • Solis, N.1    Larsen, M.R.2    Cordwell, S.J.3
  • 61
    • 62249123251 scopus 로고    scopus 로고
    • Surface display of the receptor-binding domain of the F17a-G fimbrial adhesin through the autotransporter AIDA-I leads to permeability of bacterial cells
    • Van Gerven N., Sleutel M., Deboeck F., De Greve H., Hernalsteens J.P. Surface display of the receptor-binding domain of the F17a-G fimbrial adhesin through the autotransporter AIDA-I leads to permeability of bacterial cells. Microbiology 2009, 155:468-476.
    • (2009) Microbiology , vol.155 , pp. 468-476
    • Van Gerven, N.1    Sleutel, M.2    Deboeck, F.3    De Greve, H.4    Hernalsteens, J.P.5
  • 63
    • 84893118202 scopus 로고    scopus 로고
    • Advantageous direct quantification of viable closely related probiotics in petit-suisse cheeses under in vitro gastrointestinal conditions by propidium monoazide-qPCR
    • Villarreal M.L., Padilha M., Vieira A.D., Franco B.D., Martinez R.C., Saad S.M. Advantageous direct quantification of viable closely related probiotics in petit-suisse cheeses under in vitro gastrointestinal conditions by propidium monoazide-qPCR. PLoS ONE 2013, 8:e82102.
    • (2013) PLoS ONE , vol.8
    • Villarreal, M.L.1    Padilha, M.2    Vieira, A.D.3    Franco, B.D.4    Martinez, R.C.5    Saad, S.M.6
  • 64
    • 67650177056 scopus 로고    scopus 로고
    • Identification of uropathogenic Escherichia coli surface proteins by shotgun proteomics
    • Walters M.S., Mobley H.L. Identification of uropathogenic Escherichia coli surface proteins by shotgun proteomics. J. Microbiol. Methods 2009, 78:131-135.
    • (2009) J. Microbiol. Methods , vol.78 , pp. 131-135
    • Walters, M.S.1    Mobley, H.L.2
  • 65
    • 84887995250 scopus 로고    scopus 로고
    • Live/dead state is not the factor influencing adhesion ability of Bifidobacterium animalis KLDS2.0603
    • Wang L.Q., Zhao F., Liu F., Meng X.C. Live/dead state is not the factor influencing adhesion ability of Bifidobacterium animalis KLDS2.0603. J. Microbiol. 2013, 51:584-589.
    • (2013) J. Microbiol. , vol.51 , pp. 584-589
    • Wang, L.Q.1    Zhao, F.2    Liu, F.3    Meng, X.C.4
  • 66
    • 33847021973 scopus 로고    scopus 로고
    • Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth
    • Yan F., Cao H., Cover T.L., Whitehead R., Washington M.K., Polk D.B. Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth. Gastroenterology 2007, 132:562-575. a.
    • (2007) Gastroenterology , vol.132 , pp. 562-575
    • Yan, F.1    Cao, H.2    Cover, T.L.3    Whitehead, R.4    Washington, M.K.5    Polk, D.B.6
  • 67
    • 33847021973 scopus 로고    scopus 로고
    • Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth
    • Yan F., Cao H., Cover T.L., Whitehead R., Washington M.K., Polk D.B. Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth. Gastroenterology 2007, 132:562-575. b.
    • (2007) Gastroenterology , vol.132 , pp. 562-575
    • Yan, F.1    Cao, H.2    Cover, T.L.3    Whitehead, R.4    Washington, M.K.5    Polk, D.B.6
  • 69
    • 85028169223 scopus 로고    scopus 로고
    • Proteomic characterization of the acid tolerance response in Lactobacillus delbrueckii ssp. bulgaricus CAUH1 and functional identification of a novel acid stress-related transcriptional regulator Ldb0677
    • Zhai Z., Douillard F.P., An H., Wang G., Guo X., Luo Y., Hao Y. Proteomic characterization of the acid tolerance response in Lactobacillus delbrueckii ssp. bulgaricus CAUH1 and functional identification of a novel acid stress-related transcriptional regulator Ldb0677. Environ Microbiol. 2013, 16:1524-1537.
    • (2013) Environ Microbiol. , vol.16 , pp. 1524-1537
    • Zhai, Z.1    Douillard, F.P.2    An, H.3    Wang, G.4    Guo, X.5    Luo, Y.6    Hao, Y.7
  • 70


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.