-
1
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
PMID:22495304
-
Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 2012; 485:381-5; PMID:22495304; http://dx.doi.org/10.1038/nature11049
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
Piolot, T.7
Van Berkum, N.L.8
Meisig, J.9
Sedat, J.10
-
2
-
-
84869003748
-
Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains
-
PMID:23041285
-
Hou C, Li L, Qin ZS, Corces VG. Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains. Mol Cell 2012; 48:471-84; PMID:23041285; http://dx.doi.org/10.1016/j.molcel.2012.08.031
-
(2012)
Mol Cell
, vol.48
, pp. 471-484
-
-
Hou, C.1
Li, L.2
Qin, Z.S.3
Corces, V.G.4
-
3
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
PMID:22495300
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012; 485:376-80; PMID:22495300; http://dx.doi.org/10.1038/nature11082
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
4
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
PMID:22265598
-
Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 2012; 148:458-72; PMID:22265598; http://dx.doi.org/10.1016/j.cell.2012.01.010
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
5
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
PMID:23706625
-
Phillips-Cremins JE, Sauria ME, Sanyal A, Gerasimova TI, Lajoie BR, Bell JS, Ong CT, Hookway TA, Guo C, Sun Y, et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 2013; 153:1281-95; PMID:23706625; http://dx.doi.org/10.1016/j.cell.2013.04.053
-
(2013)
Cell
, vol.153
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
Sauria, M.E.2
Sanyal, A.3
Gerasimova, T.I.4
Lajoie, B.R.5
Bell, J.S.6
Ong, C.T.7
Hookway, T.A.8
Guo, C.9
Sun, Y.10
-
6
-
-
84919949716
-
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
-
PMID:25497547
-
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, et al. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping. Cell 2014; 159:1665-80; PMID:25497547; http://dx.doi.org/10.1016/j.cell.2014.11.021
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
-
7
-
-
84928206081
-
Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing
-
PMID:25818644
-
Li L, Lyu X, Hou C, Takenaka N, Nguyen HQ, Ong CT, Cubenas-Potts C, Hu M, Lei EP, Bosco G, et al. Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing. Mol Cell 2015; 58:216-31; PMID:25818644; http://dx.doi.org/10.1016/j.molcel.2015.02.023
-
(2015)
Mol Cell
, vol.58
, pp. 216-231
-
-
Li, L.1
Lyu, X.2
Hou, C.3
Takenaka, N.4
Nguyen, H.Q.5
Ong, C.T.6
Cubenas-Potts, C.7
Hu, M.8
Lei, E.P.9
Bosco, G.10
-
8
-
-
84907512608
-
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
-
PMID:25274727
-
LeDily F, Bau D, Pohl A, Vicent GP, Serra F, Soronellas D, Castellano G, Wright RH, Ballare C, Filion G, et al. Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. Genes Dev 2014; 28:2151-62; PMID:25274727; http://dx.doi.org/10.1101/gad.241422.114
-
(2014)
Genes Dev
, vol.28
, pp. 2151-2162
-
-
Ledily, F.1
Bau, D.2
Pohl, A.3
Vicent, G.P.4
Serra, F.5
Soronellas, D.6
Castellano, G.7
Wright, R.H.8
Ballare, C.9
Filion, G.10
-
9
-
-
84900297485
-
Predictive polymermodeling reveals coupled fluctuations in chromosome conformation and transcription
-
PMID:24813616
-
Giorgetti L, Galupa R, Nora EP, Piolot T, Lam F, Dekker J, Tiana G, Heard E. Predictive polymermodeling reveals coupled fluctuations in chromosome conformation and transcription. Cell 2014; 157:950-63; PMID:24813616; http://dx.doi.org/10.1016/j.cell.2014.03.025
-
(2014)
Cell
, vol.157
, pp. 950-963
-
-
Giorgetti, L.1
Galupa, R.2
Nora, E.P.3
Piolot, T.4
Lam, F.5
Dekker, J.6
Tiana, G.7
Heard, E.8
-
10
-
-
85006305723
-
Insulator function and topological domain border strength scale with architectural protein occupancy
-
PMID:24981874
-
Van Bortle K, Nichols MH, Li L, Ong CT, Takenaka N, Qin ZS, Corces VG. Insulator function and topological domain border strength scale with architectural protein occupancy. Genome Biol 2014; 15:R82; PMID:24981874; http://dx.doi.org/10.1186/gb-2014-15-5-r82
-
(2014)
Genome Biol
, vol.15
, pp. R82
-
-
Van Bortle, K.1
Nichols, M.H.2
Li, L.3
Ong, C.T.4
Takenaka, N.5
Qin, Z.S.6
Corces, V.G.7
-
11
-
-
84924533047
-
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
-
PMID:25732821
-
Vietri Rudan M, Barrington C, Henderson S, Ernst C, Odom DT, Tanay A, Hadjur S. Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture. Cell Rep 2015; 10:1297-309; PMID:25732821; http://dx.doi.org/10.1016/j. celrep.2015.02.004
-
(2015)
Cell Rep
, vol.10
, pp. 1297-1309
-
-
Vietri Rudan, M.1
Barrington, C.2
Henderson, S.3
Ernst, C.4
Odom, D.T.5
Tanay, A.6
Hadjur, S.7
-
12
-
-
84935924135
-
Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
-
PMID:26034287
-
Gomez-Marin C, Tena JJ, Acemel RD, Lopez-Mayorga M, Naranjo S, de la Calle-Mustienes E, Maeso I, Beccari L, Aneas I, Vielmas E, et al. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders. Proc Natl Acad Sci U S A 2015; 112:7542-7; PMID:26034287; http://dx.doi.org/10.1073/pnas.1505463112
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 7542-7547
-
-
Gomez-Marin, C.1
Tena, J.J.2
Acemel, R.D.3
Lopez-Mayorga, M.4
Naranjo, S.5
De La Calle-Mustienes, E.6
Maeso, I.7
Beccari, L.8
Aneas, I.9
Vielmas, E.10
-
13
-
-
84911478490
-
Topologically associating domains are stable units of replication-timing regulation
-
PMID:25409831
-
Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, et al. Topologically associating domains are stable units of replication-timing regulation. Nature 2014; 515:402-5; PMID:25409831; http://dx.doi.org/10.1038/nature13986
-
(2014)
Nature
, vol.515
, pp. 402-405
-
-
Pope, B.D.1
Ryba, T.2
Dileep, V.3
Yue, F.4
Wu, W.5
Denas, O.6
Vera, D.L.7
Wang, Y.8
Hansen, R.S.9
Canfield, T.K.10
-
14
-
-
84890566970
-
Cohesin-mediated interactions organize chromosomal domain architecture
-
PMID:24185899
-
Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S. Cohesin-mediated interactions organize chromosomal domain architecture. EMBO J 2013; 32:3119-29; PMID:24185899; http://dx.doi.org/10.1038/emboj.2013.237
-
(2013)
EMBO J
, vol.32
, pp. 3119-3129
-
-
Sofueva, S.1
Yaffe, E.2
Chan, W.C.3
Georgopoulou, D.4
Vietri Rudan, M.5
Mira-Bontenbal, H.6
Pollard, S.M.7
Schroth, G.P.8
Tanay, A.9
Hadjur, S.10
-
15
-
-
84923796255
-
Gene regulation. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
-
PMID:25678556
-
Arner E, Daub CO, Vitting-Seerup K, Andersson R, Lilje B, Drablos F, Lennartsson A, Ronnerblad M, Hrydziuszko O, Vitezic M, et al. Gene regulation. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 2015; 347:1010-4; PMID:25678556; http://dx.doi.org/10.1126/science.1259418
-
(2015)
Science
, vol.347
, pp. 1010-1014
-
-
Arner, E.1
Daub, C.O.2
Vitting-Seerup, K.3
Ersson, R.4
Lilje, B.5
Drablos, F.6
Lennartsson, A.7
Ronnerblad, M.8
Hrydziuszko, O.9
Vitezic, M.10
-
16
-
-
84930091577
-
Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions
-
PMID:25959774
-
Lupianez DG, Kraft K, Heinrich V, Krawitz P, Brancati F, Klopocki E, Horn D, Kayserili H, Opitz JM, Laxova R, et al. Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions. Cell 2015; 161:1012-25; PMID:25959774; http://dx.doi.org/10.1016/j.cell.2015.04.004
-
(2015)
Cell
, vol.161
, pp. 1012-1025
-
-
Lupianez, D.G.1
Kraft, K.2
Heinrich, V.3
Krawitz, P.4
Brancati, F.5
Klopocki, E.6
Horn, D.7
Kayserili, H.8
Opitz, J.M.9
Laxova, R.10
-
17
-
-
84939246295
-
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
-
PMID:26276636
-
Guo Y, Xu Q, Canzio D, Shou J, Li J, Gorkin David U, Jung I, Wu H, Zhai Y, Tang Y, et al. CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function. Cell; 162:900-10; PMID:26276636; http://dx.doi.org/10.1016/j.cell.2015.07.038
-
Cell
, vol.162
, pp. 900-910
-
-
Guo, Y.1
Xu, Q.2
Canzio, D.3
Shou, J.4
Li, J.5
Gorkin David, U.6
Jung, I.7
Wu, H.8
Zhai, Y.9
Tang, Y.10
-
18
-
-
84865836579
-
Widespread plasticity in CTCF occupancy linked to DNA methylation
-
PMID:22955980
-
Wang H, Maurano MT, Qu H, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, et al. Widespread plasticity in CTCF occupancy linked to DNA methylation. Genome Res 2012; 22:1680-8; PMID:22955980; http://dx.doi.org/10.1101/gr.136101.111
-
(2012)
Genome Res
, vol.22
, pp. 1680-1688
-
-
Wang, H.1
Maurano, M.T.2
Qu, H.3
Varley, K.E.4
Gertz, J.5
Pauli, F.6
Lee, K.7
Canfield, T.8
Weaver, M.9
Sandstrom, R.10
-
19
-
-
3543010196
-
Antagonism between DNA hypermethylation and enhancer-blocking activity at the H19 DMD is uncovered by CpG mutations
-
PMID:15273688
-
Engel N, West AG, Felsenfeld G, Bartolomei MS. Antagonism between DNA hypermethylation and enhancer-blocking activity at the H19 DMD is uncovered by CpG mutations. Nat Genetics 2004; 36:883-8; PMID:15273688; http://dx.doi.org/10.1038/ng1399
-
(2004)
Nat Genetics
, vol.36
, pp. 883-888
-
-
Engel, N.1
West, A.G.2
Felsenfeld, G.3
Bartolomei, M.S.4
-
20
-
-
84923366733
-
Chromatin architecture reorganization during stemcell differentiation
-
PMID:25693564
-
Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, et al. Chromatin architecture reorganization during stemcell differentiation. Nature 2015; 518:331-6; PMID:25693564; http://dx.doi.org/10.1038/nature14222
-
(2015)
Nature
, vol.518
, pp. 331-336
-
-
Dixon, J.R.1
Jung, I.2
Selvaraj, S.3
Shen, Y.4
Antosiewicz-Bourget, J.E.5
Lee, A.Y.6
Ye, Z.7
Kim, A.8
Rajagopal, N.9
Xie, W.10
-
21
-
-
84918510740
-
Spatial genome organization: Contrasting views from chromosome conformation capture and fluorescence in situ hybridization
-
PMID:25512564
-
Williamson I, Berlivet S, Eskeland R, Boyle S, Illingworth RS, Paquette D, Dostie J, Bickmore WA. Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization. Genes Dev 2014; 28:2778-91; PMID:25512564; http://dx.doi.org/10.1101/gad.251694.114
-
(2014)
Genes Dev
, vol.28
, pp. 2778-2791
-
-
Williamson, I.1
Berlivet, S.2
Eskeland, R.3
Boyle, S.4
Illingworth, R.S.5
Paquette, D.6
Dostie, J.7
Bickmore, W.A.8
-
22
-
-
84890504911
-
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
-
PMID:24002784
-
Seitan VC, Faure AJ, Zhan Y, McCord RP, Lajoie BR, Ing-Simmons E, Lenhard B, Giorgetti L, Heard E, Fisher AG, et al. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome Res 2013; 23:2066-77; PMID:24002784; http://dx.doi.org/10.1101/gr.161620.113
-
(2013)
Genome Res
, vol.23
, pp. 2066-2077
-
-
Seitan, V.C.1
Faure, A.J.2
Zhan, Y.3
McCord, R.P.4
Lajoie, B.R.5
Ing-Simmons, E.6
Lenhard, B.7
Giorgetti, L.8
Heard, E.9
Fisher, A.G.10
-
23
-
-
84892934183
-
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
-
Zuin J, Dixon JR, van der Reijden MI, Ye Z, Kolovos P, Brouwer RW, van de Corput MP, van de Werken HJ, Knoch TA, van IWF, et al. Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells. Proc Natl Acad Sci U S A 2014; 111:996-1001
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 996-1001
-
-
Zuin, J.1
Dixon, J.R.2
Van Der Reijden, M.I.3
Ye, Z.4
Kolovos, P.5
Brouwer, R.W.6
Van De Corput, M.P.7
Van De Werken, H.J.8
Knoch, T.A.9
Van, I.10
-
24
-
-
70349873824
-
Comprehensive mapping of longrange interactions reveals folding principles of the human genome
-
PMID:19815776
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, et al. Comprehensive mapping of longrange interactions reveals folding principles of the human genome. Science 2009; 326:289-93; PMID:19815776; http://dx.doi.org/10.1126/science.1181369
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
|