-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. the gene ontology consortium
-
Ashburner M, Ball CA, Blake JA, Botstein, D, Butler H, Cherry JM, Davis AP, Dolinski, K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. 2000. Gene ontology: Tool for the unification of biology. the gene ontology consortium. Nature Genetics 25: 25-29. doi: 10.1038/75556
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
2
-
-
80051898233
-
A transcriptomic atlas of mouse neocortical layers
-
Belgard TG, Marques AC, Oliver PL, Abaan HO, Sirey TM, Hoerder-Suabedissen, A, García-Moreno F, Molnár Z, Margulies EH, Ponting CP. 2011. A transcriptomic atlas of mouse neocortical layers. Neuron 71: 605-616. doi: 10.1016/j.neuron.2011.06.039
-
(2011)
Neuron
, vol.71
, pp. 605-616
-
-
Belgard, T.G.1
Marques, A.C.2
Oliver, P.L.3
Abaan, H.O.4
Sirey, T.M.5
Hoerder-Suabedissen, A.6
García-Moreno, F.7
Molnár, Z.8
Margulies, E.H.9
Ponting, C.P.10
-
3
-
-
84960466176
-
Spatial gene-expression gradients underlie prominent heterogeneity of CA1 pyramidal neurons
-
Cembrowski MS, Bachman JL, Wang, L, Sugino K, Shields BC, Spruston, N. 2016. Spatial gene-expression gradients underlie prominent heterogeneity of CA1 pyramidal neurons. Neuron 89: 351-368. doi: 10.1016/j.neuron.2015.12.013
-
(2016)
Neuron
, vol.89
, pp. 351-368
-
-
Cembrowski, M.S.1
Bachman, J.L.2
Wang, L.3
Sugino, K.4
Shields, B.C.5
Spruston, N.6
-
4
-
-
79953212530
-
Temporally matched subpopulations of selectively interconnected principal neurons in the hippocampus
-
Deguchi Y, Donato F, Galimberti I, Cabuy E, Caroni P. 2011. Temporally matched subpopulations of selectively interconnected principal neurons in the hippocampus. Nature Neuroscience 14: 495-504. doi: 10.1038/nn.2768
-
(2011)
Nature Neuroscience
, vol.14
, pp. 495-504
-
-
Deguchi, Y.1
Donato, F.2
Galimberti, I.3
Cabuy, E.4
Caroni, P.5
-
5
-
-
84871809302
-
Star: Ultrafast universal rna-seq aligner
-
Dobin A, Davis CA, Schlesinger, F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. 2013. Star: Ultrafast universal rna-seq aligner. Bioinformatics 29: 15-21. doi: 10.1093/bioinformatics/bts635
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
6
-
-
67650925051
-
Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1
-
Dong HW, Swanson LW, Chen, L, Fanselow MS, Toga AW. 2009. Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1. Proceedings of the National Academy of Sciences of the United States of America 106: 11794-11799. doi: 10.1073/pnas.0812608106
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 11794-11799
-
-
Dong, H.W.1
Swanson, L.W.2
Chen, L.3
Fanselow, M.S.4
Toga, A.W.5
-
8
-
-
73549123839
-
Are the dorsal and ventral hippocampus functionally distinct structures?
-
Fanselow MS, Dong HW. 2010. Are the dorsal and ventral hippocampus functionally distinct structures? Neuron 65: 7-19. doi: 10.1016/j.neuron.2009.11.031
-
(2010)
Neuron
, vol.65
, pp. 7-19
-
-
Fanselow, M.S.1
Dong, H.W.2
-
9
-
-
0030883847
-
Distribution of calretinin immunoreactivity in the mouse dentate gyrus: Ii. mossy cells, with special reference to their dorsoventral difference in calretinin immunoreactivity
-
Fujise N, Liu Y, Hori N, Kosaka T. 1998. Distribution of calretinin immunoreactivity in the mouse dentate gyrus: Ii. mossy cells, with special reference to their dorsoventral difference in calretinin immunoreactivity. Neuroscience 82: 181-200. doi: 10.1016/S0306-4522(97)00261-3
-
(1998)
Neuroscience
, vol.82
, pp. 181-200
-
-
Fujise, N.1
Liu, Y.2
Hori, N.3
Kosaka, T.4
-
10
-
-
84889670948
-
-
R package version 2.8.0. 2013
-
Goff L, Trapnell C, Kelley D. cummeRbund: Analysis, exploration, manipulation, and visualization of cufflinks high-throughput sequencing data. R package version 2.8.0. 2013
-
Cummerbund: Analysis, exploration, manipulation, and visualization of cufflinks high-throughput sequencing data
-
-
Goff, L.1
Trapnell, C.2
Kelley, D.3
-
11
-
-
0242401835
-
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
-
Gong S, Zheng C, Doughty ML, Losos, K, Didkovsky N, Schambra UB, Nowak NJ, Joyner, A, Leblanc G, Hatten ME, Heintz N. 2003. A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature 425: 917-925. doi: 10.1038/nature02033
-
(2003)
Nature
, vol.425
, pp. 917-925
-
-
Gong, S.1
Zheng, C.2
Doughty, M.L.3
Losos, K.4
Didkovsky, N.5
Schambra, U.B.6
Nowak, N.J.7
Joyner, A.8
Leblanc, G.9
Hatten, M.E.10
Heintz, N.11
-
12
-
-
34548651693
-
Targeting cre recombinase to specific neuron populations with bacterial artificial chromosome constructs
-
Gong S, Doughty M, Harbaugh CR, Cummins, A, Hatten ME, Heintz, N, Gerfen CR. 2007. Targeting cre recombinase to specific neuron populations with bacterial artificial chromosome constructs. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience 27: 9817-9823. doi: 10.1523/JNEUROSCI.2707-07.2007
-
(2007)
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
, vol.27
, pp. 9817-9823
-
-
Gong, S.1
Doughty, M.2
Harbaugh, C.R.3
Cummins, A.4
Hatten, M.E.5
Heintz, N.6
Gerfen, C.R.7
-
13
-
-
62149130772
-
Quantitative transcriptional neuroanatomy of the rat hippocampus: Evidence for wide-ranging, pathway-specific heterogeneity among three principal cell layers
-
Greene JG, Borges, K, Dingledine R. 2009. Quantitative transcriptional neuroanatomy of the rat hippocampus: Evidence for wide-ranging, pathway-specific heterogeneity among three principal cell layers. Hippocampus 19: 253-264. doi: 10.1002/hipo.20502
-
(2009)
Hippocampus
, vol.19
, pp. 253-264
-
-
Greene, J.G.1
Borges, K.2
Dingledine, R.3
-
14
-
-
0032465104
-
Stratum radiatum giant cells: A type of principal cell in the rat hippocampus
-
Gulyás AI, Tóth K, McBain CJ, Freund TF. 1998. Stratum radiatum giant cells: A type of principal cell in the rat hippocampus. The European Journal of Neuroscience 10: 3813-3822. doi: 10.1046/j.1460-9568.1998.00402.x
-
(1998)
The European Journal of Neuroscience
, vol.10
, pp. 3813-3822
-
-
Gulyás, A.I.1
Tóth, K.2
McBain, C.J.3
Freund, T.F.4
-
15
-
-
39149103759
-
A manual method for the purification of fluorescently labeled neurons from the mammalian brain
-
Hempel CM, Sugino, K, Nelson SB. 2007. A manual method for the purification of fluorescently labeled neurons from the mammalian brain. Nature Protocols 2: 2924-2929. doi: 10.1038/nprot.2007.416
-
(2007)
Nature Protocols
, vol.2
, pp. 2924-2929
-
-
Hempel, C.M.1
Sugino, K.2
Nelson, S.B.3
-
16
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang DW, Sherman BT, Lempicki RA. 2009a. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Research 37: 1-13. doi: 10.1093/nar/gkn923
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
17
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. 2009b. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4: 44-57. doi: 10.1038/nprot.2008.211
-
(2009)
Nature Protocols
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
18
-
-
0037868952
-
Single-cell microarray analysis in hippocampus CA1: Demonstration and validation of cellular heterogeneity
-
Kamme F, Salunga R, Yu J, Tran DT, Zhu J, Luo L, Bittner A, Guo HQ, Miller N, Wan J, Erlander M. 2003. Single-cell microarray analysis in hippocampus CA1: Demonstration and validation of cellular heterogeneity. Journal of Neuroscience 23: 3607-3615.
-
(2003)
Journal of Neuroscience
, vol.23
, pp. 3607-3615
-
-
Kamme, F.1
Salunga, R.2
Yu, J.3
Tran, D.T.4
Zhu, J.5
Luo, L.6
Bittner, A.7
Guo, H.Q.8
Miller, N.9
Wan, J.10
Erlander, M.11
-
19
-
-
0033982936
-
Kegg: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. 2000. Kegg: Kyoto encyclopedia of genes and genomes. Nucleic acids research 28: 27-30. doi: 10.1093/nar/28.1.27
-
(2000)
Nucleic acids research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
20
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M. 2014. Data, information, knowledge and principle: Back to metabolism in KEGG. Nucleic Acids Research 42: D199-205. doi: 10.1093/nar/gkt1076
-
(2014)
Nucleic Acids Research
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
21
-
-
1942457291
-
Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization
-
Lein ES, Zhao, X, Gage FH. 2004. Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization. Journal of Neuroscience 24: 3879-3889. doi: 10.1523/JNEUROSCI.4710-03.2004
-
(2004)
Journal of Neuroscience
, vol.24
, pp. 3879-3889
-
-
Lein, E.S.1
Zhao, X.2
Gage, F.H.3
-
22
-
-
16844366957
-
Redefining the boundaries of the hippocampal CA2 subfield in the mouse using gene expression and 3-dimensional reconstruction
-
Lein ES, Callaway EM, Albright TD, Gage FH. 2005. Redefining the boundaries of the hippocampal CA2 subfield in the mouse using gene expression and 3-dimensional reconstruction. The Journal of Comparative Neurology 485: 1-10. doi: 10.1002/cne.20426
-
(2005)
The Journal of Comparative Neurology
, vol.485
, pp. 1-10
-
-
Lein, E.S.1
Callaway, E.M.2
Albright, T.D.3
Gage, F.H.4
-
23
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
Lein ES, Hawrylycz MJ, Ao N, Ayres, M, Bensinger A, Bernard, A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, et al. 2007. Genome-wide atlas of gene expression in the adult mouse brain. Nature 445: 168-176. doi: 10.1038/nature05453
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
Ayres, M.4
Bensinger, A.5
Bernard, A.6
Boe, A.F.7
Boguski, M.S.8
Brockway, K.S.9
Byrnes, E.J.10
Chen, L.11
Chen, L.12
Chen, T.M.13
Chin, M.C.14
Chong, J.15
Crook, B.E.16
Czaplinska, A.17
Dang, C.N.18
Datta, S.19
Dee, N.R.20
more..
-
24
-
-
73949140059
-
A robust and high-throughput cre reporting and characterization system for the whole mouse brain
-
Madisen L, Zwingman TA, Sunkin SM, Oh SW, Zariwala HA, Gu H, Ng LL, Palmiter RD, Hawrylycz MJ, Jones AR, Lein ES, Zeng H. 2010. A robust and high-throughput cre reporting and characterization system for the whole mouse brain. Nature Neuroscience 13: 133-140. doi: 10.1038/nn.2467
-
(2010)
Nature Neuroscience
, vol.13
, pp. 133-140
-
-
Madisen, L.1
Zwingman, T.A.2
Sunkin, S.M.3
Oh, S.W.4
Zariwala, H.A.5
Gu, H.6
Ng, L.L.7
Palmiter, R.D.8
Hawrylycz, M.J.9
Jones, A.R.10
Lein, E.S.11
Zeng, H.12
-
25
-
-
84863780340
-
Activity dynamics and behavioral correlates of CA3 and CA1 hippocampal pyramidal neurons
-
Mizuseki K, Royer S, Diba K, Buzsáki G. 2012. Activity dynamics and behavioral correlates of CA3 and CA1 hippocampal pyramidal neurons. Hippocampus 22: 1659-1680. doi: 10.1002/hipo.22002
-
(2012)
Hippocampus
, vol.22
, pp. 1659-1680
-
-
Mizuseki, K.1
Royer, S.2
Diba, K.3
Buzsáki, G.4
-
26
-
-
80054851740
-
Quantitative gene-expression analysis of the ligand-receptor system for classical neurotransmitters and neuropeptides in hippocampal CA1, CA3, and dentate gyrus
-
Nakamura NH, Akiyama, K, Naito T. 2011. Quantitative gene-expression analysis of the ligand-receptor system for classical neurotransmitters and neuropeptides in hippocampal CA1, CA3, and dentate gyrus. Hippocampus 21: 1228-1239. doi: 10.1002/hipo.20830
-
(2011)
Hippocampus
, vol.21
, pp. 1228-1239
-
-
Nakamura, N.H.1
Akiyama, K.2
Naito, T.3
-
27
-
-
84892687827
-
Ca3 retrieves coherent representations from degraded input: Direct evidence for CA3 pattern completion and dentate gyrus pattern separation
-
Neunuebel JP, Knierim JJ. 2014. Ca3 retrieves coherent representations from degraded input: Direct evidence for CA3 pattern completion and dentate gyrus pattern separation. Neuron 81: 416-427. doi: 10.1016/j.neuron.2013.11.017
-
(2014)
Neuron
, vol.81
, pp. 416-427
-
-
Neunuebel, J.P.1
Knierim, J.J.2
-
28
-
-
79956315360
-
Cell type-specific transcriptomics in the brain
-
Okaty BW, Sugino, K, Nelson SB. 2011a. Cell type-specific transcriptomics in the brain. Journal of Neuroscience 31: 6939-6943. doi: 10.1523/JNEUROSCI.0626-11.2011
-
(2011)
Journal of Neuroscience
, vol.31
, pp. 6939-6943
-
-
Okaty, B.W.1
Sugino, K.2
Nelson, S.B.3
-
29
-
-
79551520605
-
A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain
-
Okaty BW, Sugino, K, Nelson SB. 2011b. A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain. PLoS ONE 6: e16493. doi: 10.1371/journal.pone.0016493
-
(2011)
PLoS ONE
, vol.6
-
-
Okaty, B.W.1
Sugino, K.2
Nelson, S.B.3
-
30
-
-
84922230193
-
Laminar and dorsoventral molecular organization of the medial entorhinal cortex revealed by large-scale anatomical analysis of gene expression
-
Ramsden HL, Sürmeli G, McDonagh SG, Nolan MF. 2015. Laminar and dorsoventral molecular organization of the medial entorhinal cortex revealed by large-scale anatomical analysis of gene expression. PLoS Computational Biology 11: e1004032. doi: 10.1371/journal.pcbi.1004032
-
(2015)
PLoS Computational Biology
, vol.11
-
-
Ramsden, H.L.1
Sürmeli, G.2
McDonagh, S.G.3
Nolan, M.F.4
-
31
-
-
0034718595
-
Regional and strain-specific gene expression mapping in the adult mouse brain
-
Sandberg R, Yasuda R, Pankratz DG, Carter TA, Del Rio JA, Wodicka, L, Mayford M, Lockhart DJ, Barlow, C. 2000. Regional and strain-specific gene expression mapping in the adult mouse brain. Proceedings of the National Academy of Sciences of the United States of America 97: 11038-11043. doi: 10.1073/pnas.97.20.11038
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, pp. 11038-11043
-
-
Sandberg, R.1
Yasuda, R.2
Pankratz, D.G.3
Carter, T.A.4
Del Rio, J.A.5
Wodicka, L.6
Mayford, M.7
Lockhart, D.J.8
Barlow, C.9
-
32
-
-
77950803446
-
Gradients in the brain: The control of the development of form and function in the cerebral cortex
-
Sansom SN, Livesey FJ. 2009. Gradients in the brain: The control of the development of form and function in the cerebral cortex. Cold Spring Harbor perspectives in biology 1. a002519. doi: 10.1101/cshperspect.a002519
-
(2009)
Cold Spring Harbor perspectives in biology
, vol.1
-
-
Sansom, S.N.1
Livesey, F.J.2
-
33
-
-
84908542111
-
Decoding neural transcriptomes and epigenomes via high-throughput sequencing
-
Shin J, Ming GL, Song H. 2014. Decoding neural transcriptomes and epigenomes via high-throughput sequencing. Nature Neuroscience 17: 1463-1475 doi: 10.1038/nn.3814. doi: 10.1038/nn.3814
-
(2014)
Nature Neuroscience
, vol.17
, pp. 1463-1475
-
-
Shin, J.1
Ming, G.L.2
Song, H.3
-
34
-
-
84857658829
-
Transcriptional code and disease map for adult retinal cell types
-
Siegert S, Cabuy E, Scherf BG, Kohler, H, Panda S, Le Y-Z, Fehling HJ, Gaidatzis, D, Stadler MB, Roska, B. 2012. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience 15: 487-495. doi: 10.1038/nn.3032
-
(2012)
Nature Neuroscience
, vol.15
, pp. 487-495
-
-
Siegert, S.1
Cabuy, E.2
Scherf, B.G.3
Kohler, H.4
Panda, S.5
Le, Y.-Z.6
Fehling, H.J.7
Gaidatzis, D.8
Stadler, M.B.9
Roska, B.10
-
35
-
-
84925016216
-
Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity
-
Sorensen SA, Bernard, A, Menon V, Royall JJ, Glattfelder KJ, Desta, T, Hirokawa K, Mortrud M, Miller JA, Zeng, H, Hohmann JG, Jones AR, Lein ES. 2015. Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral Cortex 25: 433-449. doi: 10.1093/cercor/bht243
-
(2015)
Cerebral Cortex
, vol.25
, pp. 433-449
-
-
Sorensen, S.A.1
Bernard, A.2
Menon, V.3
Royall, J.J.4
Glattfelder, K.J.5
Desta, T.6
Hirokawa, K.7
Mortrud, M.8
Miller, J.A.9
Zeng, H.10
Hohmann, J.G.11
Jones, A.R.12
Lein, E.S.13
-
36
-
-
29444452573
-
Molecular taxonomy of major neuronal classes in the adult mouse forebrain
-
Sugino K, Hempel CM, Miller MN, Hattox AM, Shapiro, P, Wu C, Huang ZJ, Nelson SB. 2006. Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nature Neuroscience 9: 99-107. doi: 10.1038/nn1618
-
(2006)
Nature Neuroscience
, vol.9
, pp. 99-107
-
-
Sugino, K.1
Hempel, C.M.2
Miller, M.N.3
Hattox, A.M.4
Shapiro, P.5
Wu, C.6
Huang, Z.J.7
Nelson, S.B.8
-
37
-
-
77953775787
-
Granule cells in the CA3 area
-
Szabadics J, Varga C, Brunner J, Chen K, Soltesz I. 2010. Granule cells in the CA3 area. Journal of Neuroscience 30: 8296-8307. doi: 10.1523/JNEUROSCI.5602-09.2010
-
(2010)
Journal of Neuroscience
, vol.30
, pp. 8296-8307
-
-
Szabadics, J.1
Varga, C.2
Brunner, J.3
Chen, K.4
Soltesz, I.5
-
38
-
-
80053128156
-
A resource of cre driver lines for genetic targeting of gabaergic neurons in cerebral cortex
-
Taniguchi H, He M, Wu P, Kim S, Paik, R, Sugino K, Kvitsiani D, Kvitsani D, Fu Y, Lu J, Lin Y, Miyoshi G, Shima Y, Fishell G, Nelson SB, Huang ZJ. 2011. A resource of cre driver lines for genetic targeting of gabaergic neurons in cerebral cortex. Neuron 71: 995-1013. doi: 10.1016/j.neuron.2011.07.026
-
(2011)
Neuron
, vol.71
, pp. 995-1013
-
-
Taniguchi, H.1
He, M.2
Wu, P.3
Kim, S.4
Paik, R.5
Sugino, K.6
Kvitsiani, D.7
Kvitsani, D.8
Fu, Y.9
Lu, J.10
Lin, Y.11
Miyoshi, G.12
Shima, Y.13
Fishell, G.14
Nelson, S.B.15
Huang, Z.J.16
-
39
-
-
57649230076
-
Genomic anatomy of the hippocampus
-
Thompson CL, Pathak SD, Jeromin, A, Ng LL, MacPherson CR, Mortrud MT, Cusick, A, Riley ZL, Sunkin SM, Bernard, A, Puchalski RB, Gage FH, Jones AR, Bajic VB, Hawrylycz MJ, Lein ES. 2008. Genomic anatomy of the hippocampus. Neuron 60: 1010-1021. doi: 10.1016/j.neuron.2008.12.008
-
(2008)
Neuron
, vol.60
, pp. 1010-1021
-
-
Thompson, C.L.1
Pathak, S.D.2
Jeromin, A.3
Ng, L.L.4
MacPherson, C.R.5
Mortrud, M.T.6
Cusick, A.7
Riley, Z.L.8
Sunkin, S.M.9
Bernard, A.10
Puchalski, R.B.11
Gage, F.H.12
Jones, A.R.13
Bajic, V.B.14
Hawrylycz, M.J.15
Lein, E.S.16
-
40
-
-
65449136284
-
Tophat: Discovering splice junctions with rna-seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. Tophat: Discovering splice junctions with rna-seq. Bioinformatics 25: 1105-1111. doi: 10.1093/bioinformatics/btp120
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
41
-
-
77952123055
-
Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea, G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter, L. 2010. Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology 28: 511-515. doi: 10.1038/nbt.1621
-
(2010)
Nature Biotechnology
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
42
-
-
37249000787
-
Semilunar granule cells: Glutamatergic neurons in the rat dentate gyrus with axon collaterals in the inner molecular layer
-
Williams PA, Larimer, P, Gao Y, Strowbridge BW. 2007. Semilunar granule cells: Glutamatergic neurons in the rat dentate gyrus with axon collaterals in the inner molecular layer. Journal of Neuroscience 27: 13756-13761. doi: 10.1523/JNEUROSCI.4053-07.2007
-
(2007)
Journal of Neuroscience
, vol.27
, pp. 13756-13761
-
-
Williams, P.A.1
Larimer, P.2
Gao, Y.3
Strowbridge, B.W.4
-
43
-
-
84924565530
-
Brain structure. cell types in the mouse cortex and hippocampus revealed by single-cell rna-seq
-
Zeisel A, Muñoz-Manchado AB, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S. 2015. Brain structure. cell types in the mouse cortex and hippocampus revealed by single-cell rna-seq. Science 347: 1138-1142. doi: 10.1126/ science.aaa1934
-
(2015)
Science
, vol.347
, pp. 1138-1142
-
-
Zeisel, A.1
Muñoz-Manchado, A.B.2
Codeluppi, S.3
Lönnerberg, P.4
La Manno, G.5
Juréus, A.6
Marques, S.7
Munguba, H.8
He, L.9
Betsholtz, C.10
Rolny, C.11
Castelo-Branco, G.12
Hjerling-Leffler, J.13
Linnarsson, S.14
-
45
-
-
84906901689
-
An rna-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex
-
Zhang Y, Chen K, Sloan SA, Bennett ML, Scholze AR, O’Keeffe, S, Phatnani HP, Guarnieri, P, Caneda C, Ruderisch N, Deng S, Liddelow SA, Zhang C, Daneman R, Maniatis T, Barres BA, Wu JQ. 2014. An rna-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. Journal of Neuroscience 34: 11929-11947. doi: 10.1523/JNEUROSCI.1860-14.2014
-
(2014)
Journal of Neuroscience
, vol.34
, pp. 11929-11947
-
-
Zhang, Y.1
Chen, K.2
Sloan, S.A.3
Bennett, M.L.4
Scholze, A.R.5
O’Keeffe, S.6
Phatnani, H.P.7
Guarnieri, P.8
Caneda, C.9
Ruderisch, N.10
Deng, S.11
Liddelow, S.A.12
Zhang, C.13
Daneman, R.14
Maniatis, T.15
Barres, B.A.16
Wu, J.Q.17
-
46
-
-
0035905027
-
Transcriptional profiling reveals strict boundaries between hippocampal subregions
-
Zhao X, Lein ES, He A, Smith SC, Aston, C, Gage FH. 2001. Transcriptional profiling reveals strict boundaries between hippocampal subregions. Journal of Comparative Neurology 441: 187-196 doi: 10.1002/cne.1406.
-
(2001)
Journal of Comparative Neurology
, vol.441
, pp. 187-196
-
-
Zhao, X.1
Lein, E.S.2
He, A.3
Smith, S.C.4
Aston, C.5
Gage, F.H.6
|