Quenching of Unincorporated Amplification Signal Reporters in Reverse-Transcription Loop-Mediated Isothermal Amplification Enabling Bright, Single-Step, Closed-Tube, and Multiplexed Detection of RNA Viruses

Analytical Chemistry

Volumn 88, Issue 7, 2016, Pages 3562-3568

  Ball, Cameron S ^a   Light, Yooli K ^a   Koh, Chung Yan ^a   Wheeler, Sarah S ^b   Coffey, Lark L ^b   Meagher, Robert J ^a  

^a SANDIA NATIONAL LABORATORIES   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFICATION; ISOTHERMS; MULTIPLEXING; QUENCHING; REACTION RATES; RNA; SIGNAL DETECTION; TRANSCRIPTION;

AMPLIFICATION EFFICIENCIES; BACKGROUND SUBTRACTION; ENABLING TECHNOLOGIES; LOOP MEDIATED ISOTHERMAL AMPLIFICATIONS; MULTIPLEXED DETECTION; OPENING REACTIONS; REVERSE TRANSCRIPTION; SPECIFIC DETECTION;

VIRUSES;

GENETICS; ISOLATION AND PURIFICATION; NUCLEIC ACID AMPLIFICATION; RNA VIRUS; TEMPERATURE;

NUCLEIC ACID AMPLIFICATION TECHNIQUES; RNA VIRUSES; TEMPERATURE;

EID: 84964389455     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/acs.analchem.5b04054     Document Type: Article

References (24)

1. Notomi, T.; Okayama, H.; Masubuchi, H.; Yonekawa, T.; Watanabe, K.; Amino, N.; Hase, T. Nucleic Acids Res. 2000, 28 (12) e63-e63 10.1093/nar/28.12.e63
2. Parida, M.; Posadas, G.; Inoue, S.; Hasebe, F.; Morita, K. Journal of Clinical Microbiology 2004, 42 (1) 257-263 10.1128/JCM.42.1.257-263.2004
3. Mori, Y.; Nagamine, K.; Tomita, N.; Notomi, T. Biochem. Biophys. Res. Commun. 2001, 289 (1) 150-154 10.1006/bbrc.2001.5921
4. Iwamoto, T.; Sonobe, T.; Hayashi, K. Journal of Clinical Microbiology 2003, 41 (6) 2616-2622 10.1128/JCM.41.6.2616-2622.2003
5. Njiru, Z. K.; Mikosza, A. S. J.; Armstrong, T.; Enyaru, J. C.; Ndung'u, J. M.; Thompson, A. R. C. PLoS Neglected Trop. Dis. 2008, 2 (2) e147 10.1371/journal.pntd.0000147
6. Tomita, N.; Mori, Y.; Kanda, H.; Notomi, T. Nat. Protoc. 2008, 3 (5) 877-882 10.1038/nprot.2008.57
7. Goto, M.; Honda, E.; Ogura, A.; Nomoto, A.; Hanaki, K.-I. BioTechniques 2009, 46 (3) 167-172 10.2144/000113072
8. Tanner, N. A.; Zhang, Y.; Evans, T. C., Jr. Biotechniques 2015, 58 (2) 59-68 10.2144/000114253
9. Iseki, H.; Alhassan, A.; Ohta, N.; Thekisoe, O. M. M.; Yokoyama, N.; Inoue, N.; Nambota, A.; Yasuda, J.; Igarashi, I. J. Microbiol. Methods 2007, 71 (3) 281-287 10.1016/j.mimet.2007.09.019
10. Yi, J.; Zhang, W.; Zhang, D. Y. Nucleic Acids Res. 2006, 34 (11) e81-e81 10.1093/nar/gkl261
11. Kubota, R.; Alvarez, A. M.; Su, W. W.; Jenkins, D. M. Biol. Eng. Trans. 2011, 4 (2) 81-100 10.13031/2013.38509
12. Kouguchi, Y.; Fujiwara, T.; Teramoto, M.; Kuramoto, M. Mol. Cell. Probes 2010, 24 (4) 190-195 10.1016/j.mcp.2010.03.001
13. Tanner, N. A.; Zhang, Y.; Evans, T. C. Biotechniques 2012, 53, 81-89 10.2144/0000113902
14. Parida, M. M.; Santhosh, S. R.; Dash, P. K.; Tripathi, N. K.; Lakshmi, V.; Mamidi, N.; Shrivastva, A.; Gupta, N.; Saxena, P.; Babu, J. P.; Rao, P. V. L; Morita, K. Journal of Clinical Microbiology 2007, 45 (2) 351-357 10.1128/JCM.01734-06
15. Ninove, L.; Nougairede, A.; Gazin, C.; Thirion, L.; Delogu, I.; Zandotti, C.; Charrel, R. N.; De Lamballerie, X. PLoS One 2011, 6 (2) e16142 10.1371/journal.pone.0016142
16. Ninove, L.; Nougairede, A.; Gazin, C.; Thirion, L.; Delogu, I.; Zandotti, C.; Charrel, R. N.; De Lamballerie, X. PLoS One 2011, 6 (2) e16142-e16147 10.1371/journal.pone.0016142
17. Hayes, E. B.; Komar, N.; Nasci, R. S.; Montgomery, S. P.; O'Leary, D. R.; Campbell, G. L. Emerging Infect. Dis. 2005, 11 (8) 1167-1173 10.3201/eid1108.050289a
18. Thiboutot, M. M.; Kannan, S.; Kawalekar, O. U.; Shedlock, D. J.; Khan, A. S.; Sarangan, G.; Srikanth, P.; Weiner, D. B.; Muthumani, K. PLoS Neglected Trop. Dis. 2010, 4 (4) e623 10.1371/journal.pntd.0000623
19. Kendrick, K.; Stanek, D.; Blackmore, C. Centers for Disease Control and Prevention (CDC) MMWR Morb. Mortal. Wkly. Rep. 2014, 63 (48) 1137
20. Naze, F.; Le Roux, K.; Schuffenecker, I.; Zeller, H.; Staikowsky, F.; Grivard, P.; Michault, A.; Laurent, P. J. Virol. Methods 2009, 162 (1-2) 1-7 10.1016/j.jviromet.2009.03.006
21. Sun, B.; Shen, F.; McCalla, S. E.; Kreutz, J. E.; Karymov, M. A.; Ismagilov, R. F. Anal. Chem. 2013, 85 (3) 1540-1546 10.1021/ac3037206
22. Curtis, K. A.; Rudolph, D. L.; Owen, S. M. J. Virol. Methods 2008, 151 (2) 264-270 10.1016/j.jviromet.2008.04.011
23. Dauner, A. L.; Mitra, I.; Gilliland, T., Jr.; Seales, S.; Pal, S.; Yang, S.-C.; Guevara, C.; Chen, J.-H.; Liu, Y.-C.; Kochel, T. J.; Wu, S.-J. L. Diagn. Microbiol. Infect. Dis. 2015, 83 (1) 30-36 10.1016/j.diagmicrobio.2015.05.004
24. Rudolph, D. L.; Sullivan, V.; Owen, S. M.; Curtis, K. A. PLoS One 2015, 10 (5) e0126609-e0126613 10.1371/journal.pone.0126609