-
1
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
T. Yatsunenko, F. E. Rey, M. J. Manary, I. Trehan, M. G. Dominguez-Bello, M. Contreras, M. Magris, G. Hidalgo, R. N. Baldassano, A. P. Anokhin, A. C. Heath, B. Warner, J. Reeder, J. Kuczynski, J. G. Caporaso, C. A. Lozupone, C. Lauber, J. C. Clemente, D. Knights, R. Knight, J. I. Gordon, Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
2
-
-
84881484788
-
Cohabiting family members share microbiota with one another and with their dogs
-
S. J. Song, C. Lauber, E. K. Costello, C. A. Lozupone, G. Humphrey, D. Berg-Lyons, J. G. Caporaso, D. Knights, J. C. Clemente, S. Nakielny, J. I. Gordon, N. Fierer, R. Knight, Cohabiting family members share microbiota with one another and with their dogs. eLife 2, e00458 (2013).
-
(2013)
ELife
, vol.2
, pp. e00458
-
-
Song, S.J.1
Lauber, C.2
Costello, E.K.3
Lozupone, C.A.4
Humphrey, G.5
Berg-Lyons, D.6
Caporaso, J.G.7
Knights, D.8
Clemente, J.C.9
Nakielny, S.10
Gordon, J.I.11
Fierer, N.12
Knight, R.13
-
3
-
-
84925002456
-
Social networks predict gut microbiome composition in wild baboons
-
J. Tung, L. B. Barreiro, M. B. Burns, J. C. Grenier, J. Lynch, L. E. Grieneisen, J. Altmann, S. C. Alberts, R. Blekhman, E. A. Archie, Social networks predict gut microbiome composition in wild baboons. eLife 4, e05224 (2015).
-
(2015)
ELife
, vol.4
, pp. e05224
-
-
Tung, J.1
Barreiro, L.B.2
Burns, M.B.3
Grenier, J.C.4
Lynch, J.5
Grieneisen, L.E.6
Altmann, J.7
Alberts, S.C.8
Blekhman, R.9
Archie, E.A.10
-
4
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
A. L. Kau, P. P. Ahern, N. W. Griffin, A. L. Goodman, J. I. Gordon, Human nutrition, the gut microbiome and the immune system. Nature 474, 327-336 (2011).
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
5
-
-
84877026861
-
Disruption of the gut microbiome as a risk factor for microbial infections
-
A. Khosravi, S. K. Mazmanian, Disruption of the gut microbiome as a risk factor for microbial infections. Curr. Opin. Microbiol. 16, 221-227 (2013).
-
(2013)
Curr. Opin. Microbiol.
, vol.16
, pp. 221-227
-
-
Khosravi, A.1
Mazmanian, S.K.2
-
6
-
-
0000058959
-
The behaviour of free-living chimpanzees in the Gombe Stream Reserve
-
J. van Lawick-Goodall, The behaviour of free-living chimpanzees in the Gombe Stream Reserve. Anim. Behav. Monogr. 1, 161-311 (1968).
-
(1968)
Anim. Behav. Monogr.
, vol.1
, pp. 161-311
-
-
Van Lawick-Goodall, J.1
-
7
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
J. G. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Peña, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T. Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D. Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Turnbaugh, W. A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, R. Knight, QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
8
-
-
0032974177
-
Fecal microflora in healthy infants born by different methods of delivery: Permanent changes in intestinal flora after cesarean delivery
-
M.-M. Grölund, O.-P. Lehtonen, E. Eerola, P. Kero, Fecal microflora in healthy infants born by different methods of delivery: Permanent changes in intestinal flora after cesarean delivery. J. Pediatr. Gastroenterol. Nutr. 28, 19-25 (1999).
-
(1999)
J. Pediatr. Gastroenterol. Nutr.
, vol.28
, pp. 19-25
-
-
Grölund, M.-M.1
Lehtonen, O.-P.2
Eerola, E.3
Kero, P.4
-
9
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
L. A. David, C. F. Maurice, R. N. Carmody, D. B. Gootenberg, J. E. Button, B. E. Wolfe, A. V. Ling, A. S. Devlin, Y. Varma, M. A. Fischbach, S. B. Biddinger, R. J. Dutton, P. J. Turnbaugh, Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2014).
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
Ling, A.V.7
Devlin, A.S.8
Varma, Y.9
Fischbach, M.A.10
Biddinger, S.B.11
Dutton, R.J.12
Turnbaugh, P.J.13
-
10
-
-
28644450254
-
Diversity of locust gut bacteria protects against pathogen invasion
-
R. J. Dillon, C. T. Vennard, A. Buckling, A. K. Charnley, Diversity of locust gut bacteria protects against pathogen invasion. Ecol. Lett. 8, 1291-1298 (2005).
-
(2005)
Ecol. Lett.
, vol.8
, pp. 1291-1298
-
-
Dillon, R.J.1
Vennard, C.T.2
Buckling, A.3
Charnley, A.K.4
-
11
-
-
82755162640
-
Socially transmitted gut microbiota protect bumble bees against an intestinal parasite
-
H. Koch, P. Schmid-Hempel, Socially transmitted gut microbiota protect bumble bees against an intestinal parasite. Proc. Natl. Acad. Sci. U.S.A. 108, 19288-19292 (2011).
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 19288-19292
-
-
Koch, H.1
Schmid-Hempel, P.2
-
12
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
T. D. Lawley, S. Clare, A. W. Walker, M. D. Stares, T. R. Connor, C. Raisen, D. Goulding, R. Rad, F. Schreiber, C. Brandt, L. J. Deakin, D. J. Pickard, S. H. Duncan, H. J. Flint, T. G. Clark, J. Parkhill, G. Dougan, Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLOS Pathog. 8, e1002995 (2012).
-
(2012)
PLOS Pathog.
, vol.8
, pp. e1002995
-
-
Lawley, T.D.1
Clare, S.2
Walker, A.W.3
Stares, M.D.4
Connor, T.R.5
Raisen, C.6
Goulding, D.7
Rad, R.8
Schreiber, F.9
Brandt, C.10
Deakin, L.J.11
Pickard, D.J.12
Duncan, S.H.13
Flint, H.J.14
Clark, T.G.15
Parkhill, J.16
Dougan, G.17
-
13
-
-
39349107697
-
Decreased diversity of the fecal microbiome in recurrent Clostridium difficile-associated diarrhea
-
J. Y. Chang, D. A. Antonopoulos, A. Kalra, A. Tonelli, W. T. Khalife, T. M. Schmidt, V. B. Young, Decreased diversity of the fecal microbiome in recurrent Clostridium difficile-associated diarrhea. J. Infect. Dis. 197, 435-438 (2008).
-
(2008)
J. Infect. Dis.
, vol.197
, pp. 435-438
-
-
Chang, J.Y.1
Antonopoulos, D.A.2
Kalra, A.3
Tonelli, A.4
Khalife, W.T.5
Schmidt, T.M.6
Young, V.B.7
-
14
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
C. Manichanh, L. Rigottier-Gois, E. Bonnaud, K. Gloux, E. Pelletier, L. Frangeul, R. Nalin, C. Jarrin, P. Chardon, P. Marteau, J. Roca, J. Dore, Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 55, 205-211 (2006).
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
Gloux, K.4
Pelletier, E.5
Frangeul, L.6
Nalin, R.7
Jarrin, C.8
Chardon, P.9
Marteau, P.10
Roca, J.11
Dore, J.12
-
15
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium
-
The Human Microbiome Project Consortium, Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
16
-
-
0027100116
-
Complex interactions in metacommunities, with implications for biodiversity and higher levels of selection
-
D. S. Wilson, Complex interactions in metacommunities, with implications for biodiversity and higher levels of selection. Ecology 73, 1984-2000 (1992).
-
(1992)
Ecology
, vol.73
, pp. 1984-2000
-
-
Wilson, D.S.1
-
17
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
R. E. Ley, M. Hamady, C. Lozupone, P. J. Turnbaugh, R. R. Ramey, J. S. Bircher, M. L. Schlegel, T. A. Tucker, M. D. Schrenzel, R. Knight, J. I. Gordon, Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008).
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
Schlegel, M.L.7
Tucker, T.A.8
Schrenzel, M.D.9
Knight, R.10
Gordon, J.I.11
-
18
-
-
78649752538
-
Characterization of the fecalmicrobiome from non-human wild primates reveals species specific microbial communities
-
S. Yildirim, C. J. Yeoman, M. Sipos, M. Torralba, B. A. Wilson, T. L. Goldberg, R. M. Stumpf, S. R. Leigh, B. A. White, K. E. Nelson, Characterization of the fecalmicrobiome from non-human wild primates reveals species specific microbial communities. PLOS One 5, e13963 (2010).
-
(2010)
PLOS One
, vol.5
, pp. e13963
-
-
Yildirim, S.1
Yeoman, C.J.2
Sipos, M.3
Torralba, M.4
Wilson, B.A.5
Goldberg, T.L.6
Stumpf, R.M.7
Leigh, S.R.8
White, B.A.9
Nelson, K.E.10
-
19
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
H. Ochman, M. Worobey, C.-H. Kuo, J.-B. N. Ndjango, M. Peeters, B. H. Hahn, P. Hugenholtz, Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLOS Biol. 8, e1000546 (2010).
-
(2010)
PLOS Biol.
, vol.8
, pp. e1000546
-
-
Ochman, H.1
Worobey, M.2
Kuo, C.-H.3
Ndjango, J.-B.N.4
Peeters, M.5
Hahn, B.H.6
Hugenholtz, P.7
-
20
-
-
84885060317
-
Sympatric chimpanzees and gorillas harbor convergent gut microbial communities
-
A. H. Moeller, M. Peeters, J.-B. Ndjango, Y. Li, B. H. Hahn, H. Ochman, Sympatric chimpanzees and gorillas harbor convergent gut microbial communities. Genome Res. 23, 1715-1720 (2013).
-
(2013)
Genome Res.
, vol.23
, pp. 1715-1720
-
-
Moeller, A.H.1
Peeters, M.2
Ndjango, J.-B.3
Li, Y.4
Hahn, B.H.5
Ochman, H.6
-
21
-
-
84919473614
-
Rapid changes in the gut microbiome during human evolution
-
A. H. Moeller, Y. Li, E. M. Ngole, S. Ahuka-Mundeke, E. V. Lonsdorf, A. E. Pusey, M. Peeters, B. H. Hahn, H. Ochman, Rapid changes in the gut microbiome during human evolution. Proc. Natl. Acad. Sci. U.S.A. 111, 16431-16435 (2014).
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 16431-16435
-
-
Moeller, A.H.1
Li, Y.2
Ngole, E.M.3
Ahuka-Mundeke, S.4
Lonsdorf, E.V.5
Pusey, A.E.6
Peeters, M.7
Hahn, B.H.8
Ochman, H.9
-
22
-
-
0023083409
-
Transmission modes and evolution of the parasitism-mutualism continuum
-
P. W. Ewald, Transmission modes and evolution of the parasitism-mutualism continuum. Ann. N. Y. Acad. Sci. 503, 295-306 (1987).
-
(1987)
Ann. N. Y. Acad. Sci.
, vol.503
, pp. 295-306
-
-
Ewald, P.W.1
-
23
-
-
84996584385
-
The microbiome of uncontacted Amerindians
-
J. C. Clemente, E. C. Pehrsson, M. J. Blaser, K. Sandhu, Z. Gao, B. Wang, M. Magris, G. Hidalgo, M. Contreras, Ó. Noya-Alarcón, O. Lander, J. McDonald, M. Cox, J. Walter, P. L. Oh, J. F. Ruiz, S. Rodriguez, N. Shen, S. J. Song, J. Metcalf, R. Knight, G. Dantas, M. G. Dominguez-Bello, The microbiome of uncontacted Amerindians. Sci. Adv. 1, e1500183 (2015).
-
(2015)
Sci. Adv.
, vol.1
, pp. e1500183
-
-
Clemente, J.C.1
Pehrsson, E.C.2
Blaser, M.J.3
Sandhu, K.4
Gao, Z.5
Wang, B.6
Magris, M.7
Hidalgo, G.8
Contreras, M.9
Noya-Alarcón, Ó.10
Lander, O.11
McDonald, J.12
Cox, M.13
Walter, J.14
Oh, P.L.15
Ruiz, J.F.16
Rodriguez, S.17
Shen, N.18
Song, S.J.19
Metcalf, J.20
Knight, R.21
Dantas, G.22
Dominguez-Bello, M.G.23
more..
-
24
-
-
70449703996
-
What are the consequences of the disappearing human microbiota? Nat
-
M. J. Blaser, S. Falkow, What are the consequences of the disappearing human microbiota? Nat. Rev. Microbiol. 7, 887-894 (2009).
-
(2009)
Rev. Microbiol.
, vol.7
, pp. 887-894
-
-
Blaser, M.J.1
Falkow, S.2
-
26
-
-
84929623088
-
Social bonds in the dispersing sex: Partner preferences among adult female chimpanzees
-
S. Foerster, K. McLellan, K. Schroepfer-Walker, C. M. Murray, C. Krupenye, I. C. Gilby, A. E. Pusey, Social bonds in the dispersing sex: Partner preferences among adult female chimpanzees. Anim. Behav. 105, 139-152 (2015).
-
(2015)
Anim. Behav.
, vol.105
, pp. 139-152
-
-
Foerster, S.1
McLellan, K.2
Schroepfer-Walker, K.3
Murray, C.M.4
Krupenye, C.5
Gilby, I.C.6
Pusey, A.E.7
-
27
-
-
84864661768
-
Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park
-
P. H. Degnan, A. E. Pusey, E. V. Lonsdorf, J. Goodall, E. E. Wroblewski, M. L. Wilsong, R. S. Rudicell, B. H. Hahn, H. Ochman, Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park. Proc. Natl. Acad. Sci. U.S.A. 109, 13034-13039 (2012).
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 13034-13039
-
-
Degnan, P.H.1
Pusey, A.E.2
Lonsdorf, E.V.3
Goodall, J.4
Wroblewski, E.E.5
Wilsong, M.L.6
Rudicell, R.S.7
Hahn, B.H.8
Ochman, H.9
-
28
-
-
67749145263
-
Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz
-
B. F. Keele, J. H. Jones, K. A. Terio, J. D. Estes, R. S. Rudicell, M. L. Wilson, Y. Li, G. H. Learn, T. M. Beasley, J. Schumacher-Stankey, E. Wroblewski, A. Mosser, J. Raphael, S. Kamenya, E. V. Lonsdorf, D. A. Travis, T. Mlengeya, M. J. Kinsel, J. G. Else, G. Silvestri, J. Goodall, P. M. Sharp, G. M. Shaw, A. E. Pusey, B. H. Hahn, Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. Nature 460, 515-519 (2009).
-
(2009)
Nature
, vol.460
, pp. 515-519
-
-
Keele, B.F.1
Jones, J.H.2
Terio, K.A.3
Estes, J.D.4
Rudicell, R.S.5
Wilson, M.L.6
Li, Y.7
Learn, G.H.8
Beasley, T.M.9
Schumacher-Stankey, J.10
Wroblewski, E.11
Mosser, A.12
Raphael, J.13
Kamenya, S.14
Lonsdorf, E.V.15
Travis, D.A.16
Mlengeya, T.17
Kinsel, M.J.18
Else, J.G.19
Silvestri, G.20
Goodall, J.21
Sharp, P.M.22
Shaw, G.M.23
Pusey, A.E.24
Hahn, B.H.25
more..
-
29
-
-
84883860231
-
SIV-induced instability of the chimpanzee gut microbiome
-
A. H. Moeller, M. Shilts, Y. Li, R. S. Rudicell, E. V. Lonsdorf, A. E. Pusey, M. L. Wilson, B. H. Hahn, H. Ochman, SIV-induced instability of the chimpanzee gut microbiome. Cell Host Microbe 14, 340-345 (2013).
-
(2013)
Cell Host Microbe
, vol.14
, pp. 340-345
-
-
Moeller, A.H.1
Shilts, M.2
Li, Y.3
Rudicell, R.S.4
Lonsdorf, E.V.5
Pusey, A.E.6
Wilson, M.L.7
Hahn, B.H.8
Ochman, H.9
-
30
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
A. L. Goodman, G. Kallstrom, J. J. Faith, A. Reyes, A. Moore, G. Dantas, J. I. Gordon, Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc. Natl. Acad. Sci. U.S.A. 108, 6252-6257 (2011).
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 6252-6257
-
-
Goodman, A.L.1
Kallstrom, G.2
Faith, J.J.3
Reyes, A.4
Moore, A.5
Dantas, G.6
Gordon, J.I.7
|