-
1
-
-
59849113547
-
Microbes in gastrointestinal health and disease
-
Neish, A. S. (2009) Microbes in gastrointestinal health and disease. Gastroenterology 136, 65-80
-
(2009)
Gastroenterology
, vol.136
, pp. 65-80
-
-
Neish, A.S.1
-
2
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley, R. E., Peterson, D. A., and Gordon, J. I. (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
3
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., Yamada, T., Mende, D. R., Li, J., Xu, J., Li, S., Li, D., Cao, J., Wang, B., Liang, H., Zheng, H., Xie, Y., Tap, J., Lepage, P., Bertalan, M., Batto, J. M., Hansen, T., Le Paslier, D., Linneberg, A., Nielsen, H. B., Pelletier, E., Renault, P., Sicheritz-Ponten, T., Turner, K., Zhu, H., Yu, C., Li, S., Jian, M., Zhou, Y., Li, Y., Zhang, X., Li, S., Qin, N., Yang, H., Wang, J., Brunak, S., Doré, J., Guarner, F., Kristiansen, K., Pedersen, O., Parkhill, J., Weissenbach, J., Bork, P., Ehrlich, S. D., and Wang, J.; MetaHIT Consortium. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Li, S.35
Jian, M.36
Zhou, Y.37
Li, Y.38
Zhang, X.39
Li, S.40
Qin, N.41
Yang, H.42
Wang, J.43
Brunak, S.44
Doré, J.45
Guarner, F.46
Kristiansen, K.47
Pedersen, O.48
Parkhill, J.49
Weissenbach, J.50
Bork, P.51
Ehrlich, S.D.52
Wang, J.53
more..
-
4
-
-
84866066519
-
Early life: Gut microbiota and immune development in infancy
-
Martin, R., Nauta, A. J., Ben Amor, K., Knippels, L. M., Knol, J., and Garssen, J. (2010) Early life: gut microbiota and immune development in infancy. Benef. Microbes 1, 367-382
-
(2010)
Benef. Microbes
, vol.1
, pp. 367-382
-
-
Martin, R.1
Nauta, A.J.2
Ben Amor, K.3
Knippels, L.M.4
Knol, J.5
Garssen, J.6
-
5
-
-
0345830652
-
Dysbiosis in inflammatory bowel disease
-
Tamboli, C. P., Neut, C., Desreumaux, P., and Colombel, J. F. (2004) Dysbiosis in inflammatory bowel disease. Gut 53, 1-4
-
(2004)
Gut
, vol.53
, pp. 1-4
-
-
Tamboli, C.P.1
Neut, C.2
Desreumaux, P.3
Colombel, J.F.4
-
6
-
-
2342442430
-
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
-
Ott, S. J., Musfeldt, M., Wenderoth, D. F., Hampe, J., Brant, O., Fölsch, U. R., Timmis, K. N., and Schreiber, S. (2004) Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut 53, 685-693
-
(2004)
Gut
, vol.53
, pp. 685-693
-
-
Ott, S.J.1
Musfeldt, M.2
Wenderoth, D.F.3
Hampe, J.4
Brant, O.5
Fölsch, U.R.6
Timmis, K.N.7
Schreiber, S.8
-
7
-
-
0037302961
-
Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon
-
Seksik, P., Rigottier-Gois, L., Gramet, G., Sutren, M., Pochart, P., Marteau, P., Jian, R., and Doré, J. (2003) Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut 52, 237-242
-
(2003)
Gut
, vol.52
, pp. 237-242
-
-
Seksik, P.1
Rigottier-Gois, L.2
Gramet, G.3
Sutren, M.4
Pochart, P.5
Marteau, P.6
Jian, R.7
Doré, J.8
-
8
-
-
4344632902
-
Early intestinal bacterial colonization and necrotizing enterocolitis in premature infants: The putative role of Clostridium
-
De la Cochetiere, M. F., Piloquet, H., des Robert, C., Darmaun, D., Galmiche, J. P., and Roze, J. C. (2004) Early intestinal bacterial colonization and necrotizing enterocolitis in premature infants: the putative role of Clostridium. Pediatr. Res. 56, 366-370
-
(2004)
Pediatr. Res.
, vol.56
, pp. 366-370
-
-
De La-Cochetiere, M.F.1
Piloquet, H.2
Des Robert, C.3
Darmaun, D.4
Galmiche, J.P.5
Roze, J.C.6
-
9
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley, R. E., Turnbaugh, P. J., Klein, S., and Gordon, J. I. (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
10
-
-
84858376593
-
The impact of the gut microbiota on human health: An integrative view
-
Clemente, J. C., Ursell, L. K., Parfrey, L. W., and Knight, R. (2012) The impact of the gut microbiota on human health: an integrative view. Cell 148, 1258-1270
-
(2012)
Cell
, vol.148
, pp. 1258-1270
-
-
Clemente, J.C.1
Ursell, L.K.2
Parfrey, L.W.3
Knight, R.4
-
11
-
-
34547129847
-
Development of the human in fant intestinal microbiota
-
Palmer, C., Bik, E.M., DiGiulio, D. B., Relman, D. A., and Brown, P.O. (2007) Development of the human in fant intestinal microbiota. PLoS Biol. 5, e177
-
(2007)
PLoS Biol.
, vol.5
, pp. e177
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
12
-
-
33750573933
-
Dynamics of gut colonization and source of intestinal flora in healthy newborn infants
-
Tapiainen, T., Ylitalo, S., Eerola, E., and Uhari, M. (2006) Dynamics of gut colonization and source of intestinal flora in healthy newborn infants. APMIS 114, 812-817
-
(2006)
APMIS
, vol.114
, pp. 812-817
-
-
Tapiainen, T.1
Ylitalo, S.2
Eerola, E.3
Uhari, M.4
-
13
-
-
77954423424
-
Intestinal microbiota of 6-week-old infants across Europe: Geographic influence beyond delivery mode, breast-feeding, and antibiotics
-
Fallani, M., Young, D., Scott, J., Norin, E., Amarri, S., Adam, R., Aguilera, M., Khanna, S., Gil, A., Edwards, C. A., and Doré, J.; Other Members of the INFABIO Team. (2010) Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics. J. Pediatr. Gastroenterol. Nutr. 51, 77-84
-
(2010)
J. Pediatr. Gastroenterol. Nutr.
, vol.51
, pp. 77-84
-
-
Fallani, M.1
Young, D.2
Scott, J.3
Norin, E.4
Amarri, S.5
Adam, R.6
Aguilera, M.7
Khanna, S.8
Gil, A.9
Edwards, C.A.10
Doré, J.11
-
14
-
-
84929300450
-
Antibiotics, pediatric dysbiosis, and disease
-
Vangay, P., Ward, T., Gerber, J. S., and Knights, D. (2015) Antibiotics, pediatric dysbiosis, and disease. Cell Host Microbe 17, 553-564
-
(2015)
Cell Host Microbe
, vol.17
, pp. 553-564
-
-
Vangay, P.1
Ward, T.2
Gerber, J.S.3
Knights, D.4
-
15
-
-
84937901925
-
The intestinal microbiome in early life: Health and disease
-
Arrieta, M. C., Stiemsma, L. T., Amenyogbe, N., Brown, E. M., and Finlay, B. (2014) The intestinal microbiome in early life: health and disease. Front. Immunol. 5, 427
-
(2014)
Front. Immunol.
, vol.5
, pp. 427
-
-
Arrieta, M.C.1
Stiemsma, L.T.2
Amenyogbe, N.3
Brown, E.M.4
Finlay, B.5
-
16
-
-
84875851340
-
Development of intestinal microbiota in infants and its impact on health
-
Matamoros, S., Gras-Leguen, C., Le Vacon, F., Potel, G., and de La Cochetiere, M. F. (2013) Development of intestinal microbiota in infants and its impact on health. Trends Microbiol. 21, 167-173
-
(2013)
Trends Microbiol.
, vol.21
, pp. 167-173
-
-
Matamoros, S.1
Gras-Leguen, C.2
Le Vacon, F.3
Potel, G.4
De La-Cochetiere, M.F.5
-
17
-
-
78649883215
-
IS-pro: High-throughput molecular fingerprinting of the intestinal microbiota
-
Budding, A. E., Grasman, M. E., Lin, F., Bogaards, J. A., Soeltan-Kaersenhout, D. J., Vandenbroucke-Grauls, C. M., van Bodegraven, A. A., and Savelkoul, P. H. (2010) IS-pro: high-throughput molecular fingerprinting of the intestinal microbiota. FASEB J. 24, 4556-4564
-
(2010)
FASEB J.
, vol.24
, pp. 4556-4564
-
-
Budding, A.E.1
Grasman, M.E.2
Lin, F.3
Bogaards, J.A.4
Soeltan-Kaersenhout, D.J.5
Vandenbroucke-Grauls, C.M.6
Van Bodegraven, A.A.7
Savelkoul, P.H.8
-
18
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen, L., Huse, S., Sogin, M. L., and Relman, D. A. (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 6, e280
-
(2008)
PLoS Biol.
, vol.6
, pp. e280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
19
-
-
72949107142
-
Introducingmothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D.H., Robinson, C. J., Sahl, J.W., Stres, B., Thallinger, G. G., VanHorn, D. J., and Weber, C. F. (2009) Introducingmothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
VanHorn, D.J.14
Weber, C.F.15
-
20
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Peña, A.G., Goodrich, J.K., Gordon, J. I., Huttley, G. A., Kelley, S. T., Knights, D., Koenig, J. E., Ley, R. E., Lozupone, C. A., McDonald, D., Muegge, B.D., Pirrung, M., Reeder, J., Sevinsky, J. R., Turnbaugh, P. J., Walters, W. A., Widmann, J., Yatsunenko, T., Zaneveld, J., and Knight, R. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
21
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D., Price, M. N., Goodrich, J., Nawrocki, E. P., DeSantis, T. Z., Probst, A., Andersen, G. L., Knight, R., and Hugenholtz, P. (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6, 610-618
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
22
-
-
38149059040
-
Human-computer interaction. Interaction platforms and techniques
-
Mitsue, K. (2007) Human-Computer Interaction. Interaction Platforms and Techniques. Lect. Notes Comput. Sci. 4551, 106-114
-
(2007)
Lect. Notes Comput. Sci.
, vol.4551
, pp. 106-114
-
-
Mitsue, K.1
-
23
-
-
84880001502
-
RCytoscape: Tools for exploratory network analysis
-
Shannon, P. T., Grimes, M., Kutlu, B., Bot, J. J., and Galas, D. J. (2013) RCytoscape: tools for exploratory network analysis. BMC Bioinformatics 14, 217
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 217
-
-
Shannon, P.T.1
Grimes, M.2
Kutlu, B.3
Bot, J.J.4
Galas, D.J.5
-
24
-
-
84865730611
-
A set of measures of centrality based on betweenness
-
Freeman, L. C. (1977) A set of measures of centrality based on betweenness. Sociometry 40, 35-41
-
(1977)
Sociometry
, vol.40
, pp. 35-41
-
-
Freeman, L.C.1
-
25
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
-
Zoetendal, E. G., Akkermans, A. D., and De Vos, W. M. (1998) Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64, 3854-3859
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
De Vos, W.M.3
-
26
-
-
2442616728
-
Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers
-
Vanhoutte, T., Huys, G., Brandt, E., and Swings, J. (2004) Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol. Ecol. 48, 437-446
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, pp. 437-446
-
-
Vanhoutte, T.1
Huys, G.2
Brandt, E.3
Swings, J.4
-
27
-
-
33750932588
-
Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease
-
Scanlan, P. D., Shanahan, F., O'Mahony, C., and Marchesi, J. R. (2006) Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease. J. Clin. Microbiol. 44, 3980-3988
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 3980-3988
-
-
Scanlan, P.D.1
Shanahan, F.2
O'Mahony, C.3
Marchesi, J.R.4
-
28
-
-
33645870138
-
Interindividual differences in microbial counts and biochemicalas sociated variables in the feces of healthy Spanishadults
-
Delgado, S., Ruas-Madiedo, P., Suárez, A., and Mayo, B. (2006) Interindividual differences in microbial counts and biochemicalas sociated variables in the feces of healthy Spanishadults. Dig. Dis. Sci. 51, 737-743
-
(2006)
Dig. Dis. Sci.
, vol.51
, pp. 737-743
-
-
Delgado, S.1
Ruas-Madiedo, P.2
Suárez, A.3
Mayo, B.4
-
29
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg, P. B., Bik, E.M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., and Relman, D. A. (2005) Diversity of the human intestinal microbial flora. Science 308, 1635-1638
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
30
-
-
84863779749
-
Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction
-
Durbán, A., Abellán, J. J., Jiménez-Hernández, N., Latorre, A., and Moya, A. (2012) Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction. FEMS Microbiol. Ecol. 81, 427-437
-
(2012)
FEMS Microbiol. Ecol.
, vol.81
, pp. 427-437
-
-
Durbán, A.1
Abellán, J.J.2
Jiménez-Hernández, N.3
Latorre, A.4
Moya, A.5
-
31
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I., and Knight, R. (2009) Bacterial community variation in human body habitats across space and time. Science 326, 1694-1697
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
32
-
-
79952757721
-
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
-
Claesson, M. J., Cusack, S., O'Sullivan, O., Greene-Diniz, R., de Weerd, H., Flannery, E., Marchesi, J. R., Falush, D., Dinan, T., Fitzgerald, G., Stanton, C., van Sinderen, D., O'Connor, M., Harnedy, N., O'Connor, K., Henry, C., O'Mahony, D., Fitzgerald, A. P., Shanahan, F., Twomey, C., Hill, C., Ross, R. P., and O'Toole, P. W. (2011) Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc. Natl. Acad. Sci. USA 108 (Suppl 1), 4586-4591
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4586-4591
-
-
Claesson, M.J.1
Cusack, S.2
O'Sullivan, O.3
Greene-Diniz, R.4
De Weerd, H.5
Flannery, E.6
Marchesi, J.R.7
Falush, D.8
Dinan, T.9
Fitzgerald, G.10
Stanton, C.11
Van Sinderen, D.12
O'Connor, M.13
Harnedy, N.14
O'Connor, K.15
Henry, C.16
O'Mahony, D.17
Fitzgerald, A.P.18
Shanahan, F.19
Twomey, C.20
Hill, C.21
Ross, R.P.22
O'Toole, P.W.23
more..
-
33
-
-
79960854386
-
Intestinal microbiota in healthy adults: Temporal analysis reveals individual and common core and relation to intestinal symptoms
-
Jalanka-Tuovinen, J., Salonen, A., Nikkilä, J., Immonen, O., Kekkonen, R., Lahti, L., Palva, A., and de Vos, W. M. (2011) Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One 6, e23035
-
(2011)
PLoS One
, vol.6
, pp. e23035
-
-
Jalanka-Tuovinen, J.1
Salonen, A.2
Nikkilä, J.3
Immonen, O.4
Kekkonen, R.5
Lahti, L.6
Palva, A.7
De Vos, W.M.8
-
34
-
-
79952756960
-
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
-
Dethlefsen, L., and Relman, D. A. (2011) Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl. Acad. Sci. USA 108(Suppl 1), 4554-4561
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4554-4561
-
-
Dethlefsen, L.1
Relman, D.A.2
-
35
-
-
84910057313
-
Host lifestyle affects human microbiota on daily timescales
-
David, L. A., Materna, A. C., Friedman, J., Campos-Baptista, M. I., Blackburn, M. C., Perrotta, A., Erdman, S. E., and Alm, E. J. (2014) Host lifestyle affects human microbiota on daily timescales. Genome Biol. 15, R89
-
(2014)
Genome Biol.
, vol.15
, pp. R89
-
-
David, L.A.1
Materna, A.C.2
Friedman, J.3
Campos-Baptista, M.I.4
Blackburn, M.C.5
Perrotta, A.6
Erdman, S.E.7
Alm, E.J.8
-
36
-
-
84875904427
-
Long-term monitoring of the human intestinal microbiota composition
-
[published online ahead of print October 15, 2012]
-
Rajilić-Stojanović, M., Heilig, H. G., Tims, S., Zoetendal, E. G., and de Vos, W. M. (2012) Long-term monitoring of the human intestinal microbiota composition [published online ahead of print October 15, 2012]. Environ. Microbiol., doi: 10.1111/1462-2920
-
(2012)
Environ. Microbiol.
-
-
Rajilić-Stojanović, M.1
Heilig, H.G.2
Tims, S.3
Zoetendal, E.G.4
De Vos, W.M.5
-
37
-
-
84879744885
-
The long-term stability of the human gut microbiota
-
Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J.C., Knight, R., Heath, A. C., Leibel, R. L., Rosenbaum, M., and Gordon, J. I. (2013) The long-term stability of the human gut microbiota. Science 341, 1237439
-
(2013)
Science
, vol.341
, pp. 1237439
-
-
Faith, J.J.1
Guruge, J.L.2
Charbonneau, M.3
Subramanian, S.4
Seedorf, H.5
Goodman, A.L.6
Clemente, J.C.7
Knight, R.8
Heath, A.C.9
Leibel, R.L.10
Rosenbaum, M.11
Gordon, J.I.12
-
38
-
-
84880471652
-
Long-termtemporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species
-
Martínez, I., Muller, C. E., and Walter, J. (2013) Long-termtemporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species. PLoS One 8, e69621
-
(2013)
PLoS One
, vol.8
, pp. e69621
-
-
Martínez, I.1
Muller, C.E.2
Walter, J.3
-
39
-
-
84872825519
-
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States
-
Lin, A., Bik, E.M., Costello, E.K., Dethlefsen, L., Haque, R., Relman, D. A., and Singh, U. (2013) Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS One 8, e53838
-
(2013)
PLoS One
, vol.8
, pp. e53838
-
-
Lin, A.1
Bik, E.M.2
Costello, E.K.3
Dethlefsen, L.4
Haque, R.5
Relman, D.A.6
Singh, U.7
-
40
-
-
84897475563
-
Seasonal variation in human gut microbiome composition
-
Davenport, E. R., Mizrahi-Man, O., Michelini, K., Barreiro, L. B., Ober, C., and Gilad, Y. (2014) Seasonal variation in human gut microbiome composition. PLoS One 9, e90731
-
(2014)
PLoS One
, vol.9
, pp. e90731
-
-
Davenport, E.R.1
Mizrahi-Man, O.2
Michelini, K.3
Barreiro, L.B.4
Ober, C.5
Gilad, Y.6
-
41
-
-
0034636310
-
The diversity-stability debate
-
McCann, K. S. (2000) The diversity-stability debate. Nature 405, 228-233
-
(2000)
Nature
, vol.405
, pp. 228-233
-
-
McCann, K.S.1
-
42
-
-
33645372270
-
Effects of species diversity on disease risk
-
Keesing, F., Holt, R. D., and Ostfeld, R. S. (2006) Effects of species diversity on disease risk. Ecol. Lett. 9, 485-498
-
(2006)
Ecol. Lett.
, vol.9
, pp. 485-498
-
-
Keesing, F.1
Holt, R.D.2
Ostfeld, R.S.3
-
43
-
-
0036135946
-
Molecular monitoring of succession of bacterial communities in human neonates
-
Favier, C. F., Vaughan, E. E., De Vos, W. M., and Akkermans, A. D. (2002) Molecular monitoring of succession of bacterial communities in human neonates. Appl. Environ. Microbiol. 68, 219-226
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 219-226
-
-
Favier, C.F.1
Vaughan, E.E.2
De Vos, W.M.3
Akkermans, A.D.4
-
44
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., Heath, A. C., Warner, B., Reeder, J., Kuczynski, J., Caporaso, J. G., Lozupone, C. A., Lauber, C., Clemente, J. C., Knights, D., Knight, R., and Gordon, J. I. (2012) Human gut microbiome viewed across age and geography. Nature 486, 222-227
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
45
-
-
79960199887
-
Distal gut microbiota of adolescent children is different from that of adults
-
Agans, R., Rigsbee, L., Kenche, H., Michail, S., Khamis, H. J., and Paliy, O. (2011) Distal gut microbiota of adolescent children is different from that of adults. FEMS Microbiol. Ecol. 77, 404-412
-
(2011)
FEMS Microbiol. Ecol.
, vol.77
, pp. 404-412
-
-
Agans, R.1
Rigsbee, L.2
Kenche, H.3
Michail, S.4
Khamis, H.J.5
Paliy, O.6
-
46
-
-
57449095009
-
Bacterial succession in the colon during childhood and adolescence:molecular studies in a southern Indian village
-
Balamurugan, R., Janardhan, H. P., George, S., Chittaranjan, S. P., and Ramakrishna, B. S. (2008) Bacterial succession in the colon during childhood and adolescence:molecular studies in a southern Indian village. Am. J. Clin. Nutr. 88, 1643-1647
-
(2008)
Am. J. Clin. Nutr.
, vol.88
, pp. 1643-1647
-
-
Balamurugan, R.1
Janardhan, H.P.2
George, S.3
Chittaranjan, S.P.4
Ramakrishna, B.S.5
-
47
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M., Brunak, S., Doré, J., Antolín, M., Artiguenave, F., Blottiere, H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon, E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., Mérieux, A., Melo Minardi, R., M'rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D., and Bork, P.; MetaHIT Consortium. (2011) Enterotypes of the human gut microbiome. Nature 473, 174-180
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poulain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
Torrents, D.31
Ugarte, E.32
Zoetendal, E.G.33
Wang, J.34
Guarner, F.35
Pedersen, O.36
De Vos, W.M.37
Brunak, S.38
Doré, J.39
Antolín, M.40
Artiguenave, F.41
Blottiere, H.M.42
Almeida, M.43
Brechot, C.44
Cara, C.45
Chervaux, C.46
Cultrone, A.47
Delorme, C.48
Denariaz, G.49
Dervyn, R.50
Foerstner, K.U.51
Friss, C.52
Van De-Guchte, M.53
Guedon, E.54
Haimet, F.55
Huber, W.56
Van Hylckama-Vlieg, J.57
Jamet, A.58
Juste, C.59
Kaci, G.60
Knol, J.61
Lakhdari, O.62
Layec, S.63
Le Roux, K.64
Maguin, E.65
Mérieux, A.66
Melo Minardi, R.67
M'Rini, C.68
Muller, J.69
Oozeer, R.70
Parkhill, J.71
Renault, P.72
Rescigno, M.73
Sanchez, N.74
Sunagawa, S.75
Torrejon, A.76
Turner, K.77
Vandemeulebrouck, G.78
Varela, E.79
Winogradsky, Y.80
Zeller, G.81
Weissenbach, J.82
Ehrlich, S.D.83
Bork, P.84
more..
-
48
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R.E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., Egholm, M., Henrissat, B., Heath, A.C., Knight, R., and Gordon, J. I. (2009) A core gut microbiome in obese and lean twins. Nature 457, 480-484
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
Egholm, M.11
Henrissat, B.12
Heath, A.C.13
Knight, R.14
Gordon, J.I.15
-
49
-
-
70349233883
-
Towards the human intestinal microbiota phylogenetic core
-
Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J. P., Ugarte, E., Muñoz-Tamayo, R., Paslier, D. L., Nalin, R., Dore, J., and Leclerc, M. (2009) Towards the human intestinal microbiota phylogenetic core. Environ. Microbiol. 11, 2574-2584
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2574-2584
-
-
Tap, J.1
Mondot, S.2
Levenez, F.3
Pelletier, E.4
Caron, C.5
Furet, J.P.6
Ugarte, E.7
Muñoz-Tamayo, R.8
Paslier, D.L.9
Nalin, R.10
Dore, J.11
Leclerc, M.12
-
50
-
-
79960854386
-
Intestinal microbiota in healthy adults: Temporal analysis reveals individual and common core and relation to intestinal symptoms
-
Jalanka-Tuovinen, J., Salonen, A., Nikkilä, J., Immonen, O., Kekkonen, R., Lahti, L., Palva, A., and de Vos, W. M. (2011) Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One 6, e23035
-
(2011)
PLoS One
, vol.6
, pp. e23035
-
-
Jalanka-Tuovinen, J.1
Salonen, A.2
Nikkilä, J.3
Immonen, O.4
Kekkonen, R.5
Lahti, L.6
Palva, A.7
De Vos, W.M.8
-
51
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
Schloissnig, S., Arumugam, M., Sunagawa, S., Mitreva, M., Tap, J., Zhu, A., Waller, A., Mende, D. R., Kultima, J. R., Martin, J., Kota, K., Sunyaev, S. R., Weinstock, G. M., and Bork, P. (2013) Genomic variation landscape of the human gut microbiome. Nature 493, 45-50
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
Arumugam, M.2
Sunagawa, S.3
Mitreva, M.4
Tap, J.5
Zhu, A.6
Waller, A.7
Mende, D.R.8
Kultima, J.R.9
Martin, J.10
Kota, K.11
Sunyaev, S.R.12
Weinstock, G.M.13
Bork, P.14
-
52
-
-
79957574938
-
Moving pictures of the human microbiome
-
Caporaso, J. G., Lauber, C. L., Costello, E. K., Berg-Lyons, D., Gonzalez, A., Stombaugh, J., Knights, D., Gajer, P., Ravel, J., Fierer, N., Gordon, J. I., and Knight, R. (2011) Moving pictures of the human microbiome. Genome Biol. 12, R50
-
(2011)
Genome Biol.
, vol.12
, pp. R50
-
-
Caporaso, J.G.1
Lauber, C.L.2
Costello, E.K.3
Berg-Lyons, D.4
Gonzalez, A.5
Stombaugh, J.6
Knights, D.7
Gajer, P.8
Ravel, J.9
Fierer, N.10
Gordon, J.I.11
Knight, R.12
-
53
-
-
4344599461
-
Influence of mode of delivery on gut microbiota composition in seven year old children
-
Salminen, S., Gibson, G. R., McCartney, A. L., and Isolauri, E. (2004) Influence of mode of delivery on gut microbiota composition in seven year old children. Gut 53, 1388-1389
-
(2004)
Gut
, vol.53
, pp. 1388-1389
-
-
Salminen, S.1
Gibson, G.R.2
McCartney, A.L.3
Isolauri, E.4
-
54
-
-
33748415364
-
Factors influencing the composition of the intestinal microbiota in early infancy
-
Penders, J., Thijs, C., Vink, C., Stelma, F. F., Snijders, B., Kummeling, I., van den Brandt, P. A., and Stobberingh, E. E. (2006) Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics 118, 511-521
-
(2006)
Pediatrics
, vol.118
, pp. 511-521
-
-
Penders, J.1
Thijs, C.2
Vink, C.3
Stelma, F.F.4
Snijders, B.5
Kummeling, I.6
Van Den-Brandt, P.A.7
Stobberingh, E.E.8
|