Persistent infections by nontyphoidal salmonella in humans: Epidemiology and genetics

Clinical Infectious Diseases

Volumn 62, Issue 7, 2016, Pages 879-886

  Marzel, Alex ^a,b   Desai, Prerak T ^c   Goren, Alina ^a,b   Schorr, Yosef Ilan ^d   Nissan, Israel ^d   Porwollik, Steffen ^c   Valinsky, Lea ^d   Mcclelland, Michael ^c   Rahav, Galia ^a,b   Gal Mor, Ohad ^a,b  

^a SHEBA MEDICAL CENTER   (Israel)

^b TEL AVIV UNIVERSITY   (Israel)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d Ministry of Health Central Laboratories   (Israel)

Author keywords

epidemiology; persistent infection; Salmonella enterica; salmonellosis; WGS

Indexed keywords

AMINO ACID SUBSTITUTION; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL VIRULENCE; BACTERIOPHAGE; CASE CONTROL STUDY; CHILD; COLITIS; CONTROLLED STUDY; DIARRHEA; FEMALE; GENE SEQUENCE; GENOME; HUMAN; IN VITRO STUDY; IN VIVO STUDY; ISRAEL; MALE; MOUSE; NONHUMAN; NONTYPHOIDAL SALMONELLA; PERSISTENT INFECTION; PHENOTYPE; PLASMID; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RETROSPECTIVE STUDY; RISK FACTOR; SALMONELLA; SALMONELLOSIS; ADOLESCENT; ADULT; AGED; ANIMAL; BACTERIAL GENOME; CHRONIC DISEASE; DISEASE MODEL; DNA SEQUENCE; GENETICS; INFANT; MICROBIOLOGY; PATHOGENICITY; PRESCHOOL CHILD; SALMONELLA ENTERICA; SALMONELLA INFECTIONS; YOUNG ADULT;

BACTERIAL DNA;

ADOLESCENT; ADULT; AGED; ANIMALS; CHILD; CHILD, PRESCHOOL; CHRONIC DISEASE; DISEASE MODELS, ANIMAL; DNA, BACTERIAL; FEMALE; GENOME, BACTERIAL; HUMANS; INFANT; ISRAEL; MALE; MICE; RETROSPECTIVE STUDIES; SALMONELLA ENTERICA; SALMONELLA INFECTIONS; SEQUENCE ANALYSIS, DNA; YOUNG ADULT;

EID: 84963949141     PISSN: 10584838     EISSN: 15376591     Source Type: Journal    
DOI: 10.1093/cid/civ1221     Document Type: Article

References (33)

1. Galanis E, Lo Fo Wong DM, Patrick ME, et al. Web-based surveillance and global Salmonella distribution, 2000-2002. Emerg Infect Dis. 2006; 12: 381-8.
2. Desai PT, Porwollik S, Long F, et al. Evolutionary genomics of the Salmonella enterica subspecies. mBio. 2013; 4: e00579-12.
3. Edwards RA, Olsen GJ, Maloy SR. Comparative genomics of closely related salmonellae. Trends Microbiol. 2002; 10: 94-9.
4. Parry CM, Hien TT, Dougan G, White NJ, Farrar JJ. Typhoid fever. N Engl J Med. 2002; 347: 1770-82.
5. Coburn B, Grassl GA, Finlay BB. Salmonella, the host and disease: a brief review. Immunol Cell Biol. 2006; 85: 112-8.
6. Dongol S, Thompson CN, Clare S, et al. The microbiological and clinical characteristics of invasive Salmonella in gallbladders from cholecystectomy patients in Kathmandu, Nepal. PloS one. 2012; 7: e47342.
7. Guibourdenche M, Roggentin P, Mikoleit M, et al. Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme. Res Microbiol. 2010; 161: 26-9.
8. Marzel A, Desai PT, Nissan I, et al. Integrative analysis of salmonellosis in Israel, 1995-2012 reveals association of serovar 9, 12: l, v: -with extraintestinal infections, dissemination of endemic S. typhimurium DT104 biotypes and a severe underreporting of outbreaks. J Clin Microbiol 2014. JCM. 00399-14.
9. Ribot EM, Fair MA, Gautom R, et al. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis. 2006; 3: 59-67.
10. Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008; 18: 821-9.
11. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006; 22: 2688-90.
12. Webb C, Moreno M, Wilmes-Riesenberg M, Curtiss R III, Foster JW. Effects of DksA and ClpP protease on sigma S production and virulence in Salmonella typhimurium. Mol Microbiol. 1999; 34: 112-23.
13. Azriel S, Goren A, Rahav G, Gal-Mor O. The stringent response regulator DksA is required for Salmonella typhimurium growth in minimal media, motility, biofilm formation and intestinal colonization. Infect Immun. 2016; 375-84.
14. Lee IS, Lin J, Hall HK, Bearson B, Foster JW. The stationary-phase sigma factor sigma S (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium. Mol Microbiol. 1995; 17: 155-67.
15. Ellermeier JR, Slauch JM. Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium. Curr Opin Microbiol. 2007; 10: 24-9.
16. Webster C, Gardner L, Busby S. The Escherichia coli melR gene encodes a DNAbinding protein with affinity for specific sequences located in the melibiose-operon regulatory region. Gene. 1989; 83: 207-13.
17. Kong Q, Yang J, Liu Q, Alamuri P, Roland KL, Curtiss R 3rd. Effect of deletion of genes involved in lipopolysaccharide core and O-Antigen synthesis on virulence and immunogenicity of Salmonella enterica serovar typhimurium. Infect Immun. 2011; 79: 4227-39.
18. Teplitski M, Goodier RI, Ahmer BM. Pathways leading from BarA/SirA to motility and virulence gene expression in Salmonella. J Bacteriol. 2003; 185: 7257-65.
19. Kingsley RA, van Amsterdam K, Kramer N, Baumler AJ. The shdA gene is restricted to serotypes of Salmonella enterica subspecies I and contributes to efficient and prolonged fecal shedding. Infect Immun. 2000; 68: 2720-7.
20. Buchwald DS, Blaser MJ A review of human salmonellosis: II. Duration of excretion following infection with nontyphi Salmonella. Rev Infect Dis. 1984; 6: 345-56.
21. Sirinavin S, Garner P. Antibiotics for treating salmonella gut infections. Cochrane Database Syst Rev. 1999; doi: 10.1002/14651858.CD001167.
22. Lonnermark E, Lappas G, Friman V, Wold AE, Backhaus E, Adlerberth I. Effects of probiotic intake and gender on nontyphoid Salmonella infection. J Clin Gastroenterol. 2015; 49: 116-23.
23. Hohmann EL. Approach to the patient with nontyphoidal Salmonella in a stool culture. Available at: http://www.uptodate.com/contents/approach-To-Thepatient-with-nontyphoidal-salmonella-in-A-stool-culture. Accessed 27 April 2015.
24. Coombes BK, Wickham ME, Brown NF, et al. Genetic and molecular analysis of GogB, a phage-encoded type III-secreted substrate in Salmonella enterica serovar typhimurium with autonomous expression from its associated phage. J Mol Biol. 2005; 348: 817-30.
25. Hayden HS, Lim R, Brittnacher MJ, et al. Evolution of Burkholderia pseudomallei in recurrent melioidosis. PloS One. 2012; 7: e36507.
26. Zdziarski J, Brzuszkiewicz E, Wullt B, et al. Host imprints on bacterial genomes-rapid, divergent evolution in individual patients. PLoS Pathog. 2010; 6: e1001078.
27. Okoro CK, Kingsley RA, Quail MA, et al. High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella typhimurium disease. Clin Infect Dis. 2012; 54: 955-63.
28. Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R. Genomic variability of serial human isolates of Salmonella enterica serovar Typhimurium associated with prolonged carriage. J Clin Microbiol. 2015; 53: 3507-14.
29. Ellermeier CD, Ellermeier JR, Slauch JM. HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium. Mol Microbiol. 2005; 57: 691-705.
30. Martinez LC, Yakhnin H, Camacho MI, et al. Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD. Mol Microbiol. 2011; 80: 1637-56.
31. Rice CJ, Ramachandran VK, Shearer N, Thompson A. Transcriptional and Post-Transcriptional Modulation of SPI1 and SPI2 Expression by ppGpp, RpoS and DksA in Salmonella enterica sv Typhimurium. PloS One. 2015; 10: e0127523.
32. Rychlik I, Barrow PA. Salmonella stress management and its relevance to behaviour during intestinal colonisation and infection. FEMS Microbiol Rev. 2005; 29: 1021-40.
33. Koskiniemi S, Gibbons HS, Sandegren L, et al. Pathoadaptive mutations in Salmonella enterica isolated after serial passage in mice. PloS One. 2013; 8: e70147.