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Volumn 24, Issue 2, 2016, Pages 216-220

Safeguarding Structural Data Repositories against Bad Apples

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL DATA REPOSITORY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DATA BASE; DATA MINING; HUMAN; PRIORITY JOURNAL; PROTEIN DATA BANK; REVIEW; BIOLOGY; CHEMISTRY; MEASUREMENT ACCURACY; MOLECULAR MODEL; PROCEDURES; PROTEIN CONFORMATION; PROTEIN DATABASE; STANDARDS;

EID: 84963782605     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2015.12.010     Document Type: Review
Times cited : (33)

References (25)
  • 1
    • 84859169880 scopus 로고    scopus 로고
    • Drug development: Raise standards for preclinical cancer research
    • C.G. Begley, and L.M. Ellis Drug development: raise standards for preclinical cancer research Nature 483 2012 531 533
    • (2012) Nature , vol.483 , pp. 531-533
    • Begley, C.G.1    Ellis, L.M.2
  • 3
    • 34247571894 scopus 로고    scopus 로고
    • Structure of MsbA from Vibrio cholera: A multidrug resistance ABC transporter homolog in a closed conformation
    • Retraction of vol. 330, pg 419, 2003
    • G. Chang Structure of MsbA from Vibrio cholera: a multidrug resistance ABC transporter homolog in a closed conformation (Retraction of vol. 330, pg 419, 2003) J. Mol. Biol. 369 2007 596
    • (2007) J. Mol. Biol. , vol.369 , pp. 596
    • Chang, G.1
  • 4
    • 38549129314 scopus 로고    scopus 로고
    • 15S-lipoxygenase: Reinterpretation of the crystallographic data
    • 15S-lipoxygenase: reinterpretation of the crystallographic data Proteins 70 2008 1023 1032
    • (2008) Proteins , vol.70 , pp. 1023-1032
    • Choi, J.1    Chon, J.K.2    Kim, S.3    Shin, W.4
  • 6
    • 84893351797 scopus 로고    scopus 로고
    • Policy: NIH plans to enhance reproducibility
    • F.S. Collins, and L.A. Tabak Policy: NIH plans to enhance reproducibility Nature 505 2014 612 613
    • (2014) Nature , vol.505 , pp. 612-613
    • Collins, F.S.1    Tabak, L.A.2
  • 7
    • 84907810174 scopus 로고    scopus 로고
    • Avoidable errors in deposited macromolecular structures: An impediment to efficient data mining
    • Z. Dauter, A. Wlodawer, W. Minor, M. Jaskolski, and B. Rupp Avoidable errors in deposited macromolecular structures: an impediment to efficient data mining IUCrJ 1 2014 179 193
    • (2014) IUCrJ , vol.1 , pp. 179-193
    • Dauter, Z.1    Wlodawer, A.2    Minor, W.3    Jaskolski, M.4    Rupp, B.5
  • 8
    • 85014823015 scopus 로고    scopus 로고
    • Cryo-EM goes high-resolution
    • A. Doerr Cryo-EM goes high-resolution Nat. Methods 12 2015 598 599
    • (2015) Nat. Methods , vol.12 , pp. 598-599
    • Doerr, A.1
  • 9
    • 84959412874 scopus 로고    scopus 로고
    • The current revolution in Cryo-EM
    • in press
    • E.H. Egelman The current revolution in Cryo-EM Biophys. J. 110 2016 in press
    • (2016) Biophys. J. , vol.110
    • Egelman, E.H.1
  • 10
    • 84934323188 scopus 로고    scopus 로고
    • The economics of reproducibility in preclinical research
    • L.P. Freedman, I.M. Cockburn, and T.S. Simcoe The economics of reproducibility in preclinical research PLoS Biol. 13 2015 e1002165
    • (2015) PLoS Biol. , vol.13
    • Freedman, L.P.1    Cockburn, I.M.2    Simcoe, T.S.3
  • 12
    • 0030736867 scopus 로고    scopus 로고
    • The structure of mammalian 15-lipoxygenase reveals similarity to the lipases and the determinants of substrate specificity
    • S.A. Gillmor, A. Villasenor, R. Fletterick, E. Sigal, and M.F. Browner The structure of mammalian 15-lipoxygenase reveals similarity to the lipases and the determinants of substrate specificity Nat. Struct. Biol. 4 1997 1003 1009
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 1003-1009
    • Gillmor, S.A.1    Villasenor, A.2    Fletterick, R.3    Sigal, E.4    Browner, M.F.5
  • 14
    • 84909979289 scopus 로고    scopus 로고
    • Journals unite for reproducibility
    • M. McNutt Journals unite for reproducibility Science 346 2014 679
    • (2014) Science , vol.346 , pp. 679
    • McNutt, M.1
  • 15
    • 84922479998 scopus 로고    scopus 로고
    • Data, eternal
    • M. McNutt Data, eternal Science 347 2015 7
    • (2015) Science , vol.347 , pp. 7
    • McNutt, M.1
  • 17
    • 80055088241 scopus 로고    scopus 로고
    • Believe it or not: How much can we rely on published data on potential drug targets?
    • F. Prinz, T. Schlange, and K. Asadullah Believe it or not: how much can we rely on published data on potential drug targets? Nat. Rev. Drug Discov. 10 2011 712
    • (2011) Nat. Rev. Drug Discov. , vol.10 , pp. 712
    • Prinz, F.1    Schlange, T.2    Asadullah, K.3
  • 19
    • 84938945566 scopus 로고    scopus 로고
    • Crystallography and chemistry should always go together: A cautionary tale of protein complexes with cisplatin and carboplatin
    • I. Shabalin, Z. Dauter, M. Jaskolski, W. Minor, and A. Wlodawer Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin Acta Crystallogr. D Biol. Crystallogr. 71 2015 1965 1979
    • (2015) Acta Crystallogr. D Biol. Crystallogr. , vol.71 , pp. 1965-1979
    • Shabalin, I.1    Dauter, Z.2    Jaskolski, M.3    Minor, W.4    Wlodawer, A.5
  • 20
    • 58849161857 scopus 로고    scopus 로고
    • Structure validation in chemical crystallography
    • A.L. Spek Structure validation in chemical crystallography Acta Crystallogr. D Biol. Crystallogr. 65 2009 148 155
    • (2009) Acta Crystallogr. D Biol. Crystallogr. , vol.65 , pp. 148-155
    • Spek, A.L.1
  • 22
    • 84940864451 scopus 로고    scopus 로고
    • Response from Tanley et al. to Crystallography and chemistry should always go together: A cautionary tale of protein complexes with cisplatin and carboplatin
    • S.W. Tanley, K. Diederichs, L.M. Kroon-Batenburg, C. Levy, A.M. Schreurs, and J.R. Helliwell Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin Acta Crystallogr. D Biol. Crystallogr. 71 2015 1982 1983
    • (2015) Acta Crystallogr. D Biol. Crystallogr. , vol.71 , pp. 1982-1983
    • Tanley, S.W.1    Diederichs, K.2    Kroon-Batenburg, L.M.3    Levy, C.4    Schreurs, A.M.5    Helliwell, J.R.6
  • 23
    • 84907829283 scopus 로고    scopus 로고
    • Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: The dual role of deposited experimental data
    • T.C. Terwilliger, and G. Bricogne Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data Acta Crystallogr. D Biol. Crystallogr. 70 2014 2533 2543
    • (2014) Acta Crystallogr. D Biol. Crystallogr. , vol.70 , pp. 2533-2543
    • Terwilliger, T.C.1    Bricogne, G.2
  • 24
    • 84918497716 scopus 로고    scopus 로고
    • Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering
    • M.E. Wall, A.H. Van Benschoten, N.K. Sauter, P.D. Adams, J.S. Fraser, and T.C. Terwilliger Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering Proc. Natl. Acad. Sci. USA 111 2014 17887 17892
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 17887-17892
    • Wall, M.E.1    Van Benschoten, A.H.2    Sauter, N.K.3    Adams, P.D.4    Fraser, J.S.5    Terwilliger, T.C.6
  • 25
    • 48849104435 scopus 로고    scopus 로고
    • Data mining of metal ion environments present in protein structures
    • H. Zheng, M. Chruszcz, P. Lasota, L. Lebioda, and W. Minor Data mining of metal ion environments present in protein structures J. Inorg. Biochem. 102 2008 1765 1776
    • (2008) J. Inorg. Biochem. , vol.102 , pp. 1765-1776
    • Zheng, H.1    Chruszcz, M.2    Lasota, P.3    Lebioda, L.4    Minor, W.5


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