메뉴 건너뛰기




Volumn 72, Issue 4, 2016, Pages 1358-1368

PCAN: Probabilistic correlation analysis of two non-normal data sets

Author keywords

Canonical correlation analysis; Correlation; Generalized linear models; Poisson regression; RNA sequencing

Indexed keywords

CORRELATION METHODS; DISEASES; PARAMETER ESTIMATION; POISSON DISTRIBUTION;

EID: 84963647553     PISSN: 0006341X     EISSN: 15410420     Source Type: Journal    
DOI: 10.1111/biom.12516     Document Type: Article
Times cited : (12)

References (32)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis forsequence count data
    • Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology 11, R106.
    • (2010) Genome Biology , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 5
    • 0004161731 scopus 로고    scopus 로고
    • West Sussex, England John Wiley & Sons, 2 edition
    • Congdon, P. (2006). Bayesian Statistical Modelling. West Sussex, England: John Wiley & Sons, 2 edition.
    • (2006) BayesianStatistical Modelling
    • Congdon, P.1
  • 6
    • 84887791432 scopus 로고    scopus 로고
    • A comprehensive evaluation of normalization methods for illumina high-throughput rna sequencing data analysis
    • Dillies, M.-A., Rau, A., Aubert, J., Hennequet-Antier, C., Jeanmougin, M., Servant, N., et al. (2013). A comprehensive evaluation of normalization methods for illumina high-throughput rna sequencing data analysis. Briefings in bioinformatics 14, 671–683.
    • (2013) Briefings in bioinformatics , vol.14 , pp. 671-683
    • Dillies, M.-A.1    Rau, A.2    Aubert, J.3    Hennequet-Antier, C.4    Jeanmougin, M.5    Servant, N.6
  • 7
    • 0030539706 scopus 로고    scopus 로고
    • Measuring the pricing error of the arbitrage pricing theory
    • Geweke, J. and Zhou, G. (1996). Measuring the pricing error of the arbitrage pricing theory. Review of Financial Studies 9, 557–587.
    • (1996) Review of Financial Studies , vol.9 , pp. 557-587
    • Geweke, J.1    Zhou, G.2
  • 11
    • 70350694448 scopus 로고    scopus 로고
    • integrOmics: An R package to unravel relationships between two omics datasets
    • Lê Cao, K.-A., González, I., and Déjean, S. (2009). integrOmics: An R package to unravel relationships between two omics datasets. Bioinformatics 25, 2855–2856.
    • (2009) Bioinformatics , vol.25 , pp. 2855-2856
    • Lê Cao, K.-A.1    González, I.2    Déjean, S.3
  • 12
    • 1842539381 scopus 로고    scopus 로고
    • Bayesian model assessment in factor analysis
    • Lopes, H. F. and West, M. (2004). Bayesian model assessment in factor analysis. Statistica Sinica 14, 41–68.
    • (2004) Statistica Sinica , vol.14 , pp. 41-68
    • Lopes, H.F.1    West, M.2
  • 14
    • 0000335983 scopus 로고
    • In, Models of Neural Networks III, E. Domany, J. L. van HemmenK. Schulten, (eds), chapter 6,, New York, NY Springer
    • Mackay, D. J. C. (1994). Bayesian methods for backpropagation networks. In Models of Neural Networks III, E. Domany, J. L. van Hemmen, and K. Schulten, (eds), chapter 6, 211–254. New York, NY: Springer.
    • (1994) Bayesian methods for backpropagation networks , pp. 211-254
    • Mackay, D.J.C.1
  • 15
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor rna-seqexperiments with respect to biological variation
    • McCarthy, D. J., Chen, Y., and Smyth, G. K. (2012). Differential expression analysis of multifactor rna-seq experiments with respect to biological variation. Nucleic Acids Research 40, 4288–4297.
    • (2012) Nucleic Acids Research , vol.40 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 18
    • 84923922737 scopus 로고    scopus 로고
    • Comparative evaluation of gene set analysis approaches forrna-seq data
    • Rahmatallah, Y., Emmert-Streib, F., and Glazko, G. (2014). Comparative evaluation of gene set analysis approaches for rna-seq data. BMC Bioinformatics 15, 397.
    • (2014) BMC Bioinformatics , vol.15 , pp. 397
    • Rahmatallah, Y.1    Emmert-Streib, F.2    Glazko, G.3
  • 19
    • 65349090170 scopus 로고    scopus 로고
    • Microrna and gene expression patterns in the differentiation of human embryonic stem cells
    • Ren, J., Jin, P., Wang, E., Marincola, F. M., and Stroncek, D. F. (2009). Microrna and gene expression patterns in the differentiation of human embryonic stem cells. Journal of Translational Medicine 7, 20.
    • (2009) Journal of Translational Medicine , vol.7 , pp. 20
    • Ren, J.1    Jin, P.2    Wang, E.3    Marincola, F.M.4    Stroncek, D.F.5
  • 20
    • 77957937001 scopus 로고    scopus 로고
    • PsychometricPersonality Research, Northwestern University, Evanston, Illinois.R package version 1.5.8
    • Revelle, W. (2015). psych: Procedures for Psychological, Psychometric, and Personality Research. Northwestern University, Evanston, Illinois. R package version 1.5.8.
    • (2015) psych Procedures for Psychological
    • Revelle, W.1
  • 21
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of rna-seq data
    • Robinson, M. and Oshlack, A. (2010). A scaling normalization method for differential expression analysis of rna-seq data. Genome Biology 11, R25.
    • (2010) Genome Biology , vol.11 , pp. R25
    • Robinson, M.1    Oshlack, A.2
  • 22
    • 75249087100 scopus 로고    scopus 로고
    • edger: A bioconductor package fordifferential expression analysis of digital gene expression data
    • Robinson, M. D., McCarthy, D. J., and Smyth, G. K. (2010). edger: A bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139–140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 23
    • 79957645229 scopus 로고    scopus 로고
    • Integrated micrornaand mrna expression profiling in a rat colon carcinogenesis model:Effect of a chemo-protective diet
    • Shah, M. S., Schwartz, S. L., Zhao, C., Davidson, L. A., Zhou, B., Lupton, J. R., et al. (2011). Integrated microrna and mrna expression profiling in a rat colon carcinogenesis model: Effect of a chemo-protective diet. Physiological Genomics 43, 640.
    • (2011) Physiological Genomics , vol.43 , pp. 640
    • Shah, M.S.1    Schwartz, S.L.2    Zhao, C.3    Davidson, L.A.4    Zhou, B.5    Lupton, J.R.6
  • 24
    • 83455234736 scopus 로고    scopus 로고
    • Aberrant signaling pathways in squamouscell lung carcinoma
    • Shi, I., Sadraei, N. H., Duan, Z.-H., and Shi, T. (2011). Aberrant signaling pathways in squamous cell lung carcinoma. Cancer Informatics 10, 273.
    • (2011) Cancer Informatics , vol.10 , pp. 273
    • Shi, I.1    Sadraei, N.H.2    Duan, Z.-H.3    Shi, T.4
  • 29
    • 84892565549 scopus 로고    scopus 로고
    • Validation and targetgene screening of hsa-mir-205 in lung squamous cell carcinoma
    • Wei, H., Yi, J., Yunfeng, Y., Chunxue, B., Ying, W., Hongguang, Z., et al. (2014). Validation and target gene screening of hsa-mir-205 in lung squamous cell carcinoma. Chinese Medical Journal 127, 272–278.
    • (2014) Chinese Medical Journal , vol.127 , pp. 272-278
    • Wei, H.1    Yi, J.2    Yunfeng, Y.3    Chunxue, B.4    Ying, W.5    Hongguang, Z.6
  • 30
    • 0001096846 scopus 로고
    • Bivariatedistributions with given marginals
    • Whitt, W. (1976). Bivariate distributions with given marginals. The Annals of Statistics 4, 1280–1289.
    • (1976) The Annals of Statistics , vol.4 , pp. 1280-1289
    • Whitt, W.1
  • 31
    • 70149096300 scopus 로고    scopus 로고
    • A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
    • Witten, D. M., Tibshirani, R., and Hastie, T. (2009). A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 10, 515–534.
    • (2009) Biostatistics , vol.10 , pp. 515-534
    • Witten, D.M.1    Tibshirani, R.2    Hastie, T.3
  • 32
    • 84857048553 scopus 로고    scopus 로고
    • On generating multivariate poisson data in management science applications
    • Yahv, I. and Shmueli, G. (2011). On generating multivariate poisson data in management science applications. Applied Stochastic Models in Business Industry 28, 91–102.
    • (2011) Applied Stochastic Models in Business Industry , vol.28 , pp. 91-102
    • Yahv, I.1    Shmueli, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.