메뉴 건너뛰기




Volumn 75, Issue 5, 2016, Pages 891-898

Genome-wide search followed by replication reveals genetic interaction of CD80 and ALOX5AP associated with systemic lupus erythematosus in asian populations

(45)  Zhang, Yan a   Yang, Jing a   Zhang, Jing a   Sun, Liangdan b   Hirankarn, Nattiya c   Pan, Hai Feng b   Lau, Chak Sing a   Chan, Tak Mao a   Lee, Tsz Leung a   Leung, Alexander Moon Ho d   Mok, Chi Chiu e   Zhang, Lu a   Wang, Yongfei a   Shen, Jiangshan Jane a   Wong, Sik Nin e   Lee, Ka Wing f   Ho, Marco Hok Kung a   Lee, Pamela Pui Wah a   Chung, Brian Hon Yin a   Chong, Chun Yin a   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARACHIDONATE 5 LIPOXYGENASE ACTIVATING PROTEIN; B7 ANTIGEN; FAS ANTIGEN; ALOX5AP PROTEIN, HUMAN; LHFP PROTEIN, HUMAN; ONCOPROTEIN;

EID: 84963529456     PISSN: 00034967     EISSN: 14682060     Source Type: Journal    
DOI: 10.1136/annrheumdis-2014-206367     Document Type: Article
Times cited : (29)

References (43)
  • 1
    • 0026503767 scopus 로고
    • Systemic lupus erythematosus and related systemic diseases in a nationwide twin cohort: An increased prevalence of disease in MZ twins and concordance of disease features
    • Jarvinen P, Kaprio J, Makitalo R, et al. Systemic lupus erythematosus and related systemic diseases in a nationwide twin cohort: an increased prevalence of disease in MZ twins and concordance of disease features. J Intern Med 1992;231:67-72.
    • (1992) J Intern Med , vol.231 , pp. 67-72
    • Jarvinen, P.1    Kaprio, J.2    Makitalo, R.3
  • 2
    • 0031008047 scopus 로고    scopus 로고
    • Family and twin studies in systemic lupus erythematosus
    • Grennan DM, Parfitt A, Manolios N, et al. Family and twin studies in systemic lupus erythematosus. Dis Markers 1997;13:93-8.
    • (1997) Dis Markers , vol.13 , pp. 93-98
    • Grennan, D.M.1    Parfitt, A.2    Manolios, N.3
  • 3
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie human diseases
    • Cordell HJ. Detecting gene-gene interactions that underlie human diseases. Nat Rev Genet 2009;10:392-404.
    • (2009) Nat Rev Genet , vol.10 , pp. 392-404
    • Cordell, H.J.1
  • 4
    • 33744937046 scopus 로고    scopus 로고
    • Machine learning for detecting gene-gene interactions: A review
    • McKinney BA, Reif DM, Ritchie MD, et al. Machine learning for detecting gene-gene interactions: a review. Appl Bioinformatics 2006;5:77-88.
    • (2006) Appl Bioinformatics , vol.5 , pp. 77-88
    • McKinney, B.A.1    Reif, D.M.2    Ritchie, M.D.3
  • 5
    • 0036260234 scopus 로고    scopus 로고
    • New strategies for identifying gene-gene interactions in hypertension
    • Moore JH, Williams SM. New strategies for identifying gene-gene interactions in hypertension. Ann Med 2002;34:88-95.
    • (2002) Ann Med , vol.34 , pp. 88-95
    • Moore, J.H.1    Williams, S.M.2
  • 6
    • 0037433052 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions
    • Hahn LW, Ritchie MD, Moore JH. Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics 2003;19:376-82.
    • (2003) Bioinformatics , vol.19 , pp. 376-382
    • Hahn, L.W.1    Ritchie, M.D.2    Moore, J.H.3
  • 7
    • 1842866369 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction shows a two-locus interaction associated with Type 2 diabetes mellitus
    • Cho YM, Ritchie MD, Moore JH, et al. Multifactor-dimensionality reduction shows a two-locus interaction associated with Type 2 diabetes mellitus. Diabetologia 2004;47:549-54.
    • (2004) Diabetologia , vol.47 , pp. 549-554
    • Cho, Y.M.1    Ritchie, M.D.2    Moore, J.H.3
  • 8
    • 34250006823 scopus 로고    scopus 로고
    • Identification of a two-loci epistatic interaction associated with susceptibility to rheumatoid arthritis through reverse engineering and multifactor dimensionality reduction
    • Julia A, Moore J, Miquel L, et al. Identification of a two-loci epistatic interaction associated with susceptibility to rheumatoid arthritis through reverse engineering and multifactor dimensionality reduction. Genomics 2007;90:6-13.
    • (2007) Genomics , vol.90 , pp. 6-13
    • Julia, A.1    Moore, J.2    Miquel, L.3
  • 9
    • 84863026696 scopus 로고    scopus 로고
    • Evidence for gene-gene epistatic interactions among susceptibility loci for systemic lupus erythematosus
    • Hughes T, Adler A, Kelly JA, et al. Evidence for gene-gene epistatic interactions among susceptibility loci for systemic lupus erythematosus. Arthritis Rheum 2012;64:485-92.
    • (2012) Arthritis Rheum , vol.64 , pp. 485-492
    • Hughes, T.1    Adler, A.2    Kelly, J.A.3
  • 10
    • 84870941026 scopus 로고    scopus 로고
    • Gene-gene and gene-sex epistatic interactions of MiR146a, IRF5, IKZF1, ETS1 and IL21 in systemic lupus erythematosus
    • Leng RX, Wang W, Cen H, et al. Gene-gene and gene-sex epistatic interactions of MiR146a, IRF5, IKZF1, ETS1 and IL21 in systemic lupus erythematosus. PLoS One 2012;7:e51090.
    • (2012) PLoS One , vol.7 , pp. e51090
    • Leng, R.X.1    Wang, W.2    Cen, H.3
  • 11
    • 84855295760 scopus 로고    scopus 로고
    • Gene-gene interaction of BLK, TNFSF4, TRAF1, TNFAIP3, and REL in systemic lupus erythematosus
    • Zhou XJ, Lu XL, Nath SK, et al. Gene-gene interaction of BLK, TNFSF4, TRAF1, TNFAIP3, and REL in systemic lupus erythematosus. Arthritis Rheum 2012;64:222-31.
    • (2012) Arthritis Rheum , vol.64 , pp. 222-231
    • Zhou, X.J.1    Lu, X.L.2    Nath, S.K.3
  • 12
    • 84885143124 scopus 로고    scopus 로고
    • Genetic interactions between BANK1 and BLK in Chinese patients with systemic lupus erythematosus
    • Zhou XJ, Qi YY, Cheng FJ, et al. Genetic interactions between BANK1 and BLK in Chinese patients with systemic lupus erythematosus. J Rheumatol 2013;40:1772-3.
    • (2013) J Rheumatol , vol.40 , pp. 1772-1773
    • Zhou, X.J.1    Qi, Y.Y.2    Cheng, F.J.3
  • 13
    • 84900502897 scopus 로고    scopus 로고
    • Gene-gene Interactions of IRF5, STAT4, IKZF1 and ETS1 in systemic lupus erythematosus
    • Dang J, Shan S, Li J, et al. Gene-gene Interactions of IRF5, STAT4, IKZF1 and ETS1 in systemic lupus erythematosus. Tissue Antigens 2014;83:401-8.
    • (2014) Tissue Antigens , vol.83 , pp. 401-408
    • Dang, J.1    Shan, S.2    Li, J.3
  • 14
    • 77649206245 scopus 로고    scopus 로고
    • Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
    • Yang W, Shen N, Ye DQ, et al. Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus. PLoS Genet 2010;6:e1000841.
    • (2010) PLoS Genet , vol.6 , pp. e1000841
    • Yang, W.1    Shen, N.2    Ye, D.Q.3
  • 15
    • 70350629871 scopus 로고    scopus 로고
    • Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus
    • Han JW, Zheng HF, Cui Y, et al. Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus. Nat Genet 2009;41:1234-7.
    • (2009) Nat Genet , vol.41 , pp. 1234-1237
    • Han, J.W.1    Zheng, H.F.2    Cui, Y.3
  • 16
    • 84872328824 scopus 로고    scopus 로고
    • Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians
    • Yang W, Tang H, Zhang Y, et al. Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. Am J Hum Genet 2013;92:41-51.
    • (2013) Am J Hum Genet , vol.92 , pp. 41-51
    • Yang, W.1    Tang, H.2    Zhang, Y.3
  • 17
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007;81:559-75.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3
  • 18
    • 0001677717 scopus 로고
    • Controlling the false discovery rate -A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate-a practical and powerful approach to multiple testing. J Roy Stat Soc B Met 1995;57:289-300.
    • (1995) J Roy Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 19
    • 77955894071 scopus 로고    scopus 로고
    • METAL: Fast and efficient meta-analysis of genomewide association scans
    • Willer CJ, Li Y, Abecasis GR. METAL: fast and efficient meta-analysis of genomewide association scans. Bioinformatics 2010;26:2190-1.
    • (2010) Bioinformatics , vol.26 , pp. 2190-2191
    • Willer, C.J.1    Li, Y.2    Abecasis, G.R.3
  • 20
    • 78651086505 scopus 로고    scopus 로고
    • ELF1 is associated with systemic lupus erythematosus in Asian populations
    • Yang J, Yang W, Hirankarn N, et al. ELF1 is associated with systemic lupus erythematosus in Asian populations. Hum Mol Genet 2011;20:601-7.
    • (2011) Hum Mol Genet , vol.20 , pp. 601-607
    • Yang, J.1    Yang, W.2    Hirankarn, N.3
  • 21
    • 38649125210 scopus 로고    scopus 로고
    • Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci
    • Harley JB, Alarcon-Riquelme ME, Criswell LA, et al. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. Nat Genet 2008;40:204-10.
    • (2008) Nat Genet , vol.40 , pp. 204-210
    • Harley, J.B.1    Alarcon-Riquelme, M.E.2    Criswell, L.A.3
  • 22
    • 70350650472 scopus 로고    scopus 로고
    • A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus
    • Gateva V, Sandling JK, Hom G, et al. A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus. Nat Genet 2009;41:1228-33.
    • (2009) Nat Genet , vol.41 , pp. 1228-1233
    • Gateva, V.1    Sandling, J.K.2    Hom, G.3
  • 23
    • 84875463042 scopus 로고    scopus 로고
    • Molecular mechanisms of T cell co-stimulation and co-inhibition
    • Chen L, Flies DB. Molecular mechanisms of T cell co-stimulation and co-inhibition. Nat Rev Immunol 2013;13:227-42.
    • (2013) Nat Rev Immunol , vol.13 , pp. 227-242
    • Chen, L.1    Flies, D.B.2
  • 24
    • 17644434779 scopus 로고    scopus 로고
    • Analysis of CD80 and CD86 expression on peripheral blood B lymphocytes reveals increased expression of CD86 in lupus patients
    • Folzenlogen D, Hofer MF, Leung DY, et al. Analysis of CD80 and CD86 expression on peripheral blood B lymphocytes reveals increased expression of CD86 in lupus patients. Clin Immunol Immunopathol 1997;83:199-204.
    • (1997) Clin Immunol Immunopathol , vol.83 , pp. 199-204
    • Folzenlogen, D.1    Hofer, M.F.2    Leung, D.Y.3
  • 25
    • 79952117837 scopus 로고    scopus 로고
    • Expression and significance of CD80/CD86 in renal tissue of lupus nephritis
    • Sui MS, Zhou J, Jia XB, et al. [Expression and significance of CD80/CD86 in renal tissue of lupus nephritis]. Zhonghua Nei Ke Za Zhi 2010;49:691-5.
    • (2010) Zhonghua Nei Ke Za Zhi , vol.49 , pp. 691-695
    • Sui, M.S.1    Zhou, J.2    Jia, X.B.3
  • 26
    • 77950243833 scopus 로고    scopus 로고
    • Multiple common variants for celiac disease influencing immune gene expression
    • Dubois PC, Trynka G, Franke L, et al. Multiple common variants for celiac disease influencing immune gene expression. Nat Genet 2010;42:295-302.
    • (2010) Nat Genet , vol.42 , pp. 295-302
    • Dubois, P.C.1    Trynka, G.2    Franke, L.3
  • 27
    • 84863199471 scopus 로고    scopus 로고
    • Replication study of 10 genes showing evidence for association with multiple sclerosis: Validation of TMEM39A, IL12B and CBLB [correction of CLBL] genes
    • Varade J, Comabella M, Ortiz MA, et al. Replication study of 10 genes showing evidence for association with multiple sclerosis: validation of TMEM39A, IL12B and CBLB [correction of CLBL] genes. Mult Scler 2012;18:959-65.
    • (2012) Mult Scler , vol.18 , pp. 959-965
    • Varade, J.1    Comabella, M.2    Ortiz, M.A.3
  • 28
    • 84867248201 scopus 로고    scopus 로고
    • Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population
    • Nakamura M, Nishida N, Kawashima M, et al. Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population. Am J Hum Genet 2012;91:721-8.
    • (2012) Am J Hum Genet , vol.91 , pp. 721-728
    • Nakamura, M.1    Nishida, N.2    Kawashima, M.3
  • 29
    • 77952214662 scopus 로고    scopus 로고
    • GREAT improves functional interpretation of cis-regulatory regions
    • McLean CY, Bristor D, Hiller M, et al. GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 2010;28:495-501.
    • (2010) Nat Biotechnol , vol.28 , pp. 495-501
    • McLean, C.Y.1    Bristor, D.2    Hiller, M.3
  • 30
    • 84870231915 scopus 로고    scopus 로고
    • Disruption of the alox5ap gene ameliorates focal ischemic stroke: Possible consequence of impaired leukotriene biosynthesis
    • Strom JO, Strid T, Hammarstrom S. Disruption of the alox5ap gene ameliorates focal ischemic stroke: possible consequence of impaired leukotriene biosynthesis. BMC Neurosci 2012;13:146.
    • (2012) BMC Neurosci , vol.13 , pp. 146
    • Strom, J.O.1    Strid, T.2    Hammarstrom, S.3
  • 31
    • 34548805282 scopus 로고    scopus 로고
    • A genome-wide association study of global gene expression
    • Dixon AL, Liang L, Moffatt MF, et al. A genome-wide association study of global gene expression. Nat Genet 2007;39:1202-7.
    • (2007) Nat Genet , vol.39 , pp. 1202-1207
    • Dixon, A.L.1    Liang, L.2    Moffatt, M.F.3
  • 32
    • 34547216747 scopus 로고    scopus 로고
    • Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma
    • Moffatt MF, Kabesch M, Liang L, et al. Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma. Nature 2007;448:470-3.
    • (2007) Nature , vol.448 , pp. 470-473
    • Moffatt, M.F.1    Kabesch, M.2    Liang, L.3
  • 33
    • 77957232748 scopus 로고    scopus 로고
    • Genevar: A database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
    • Yang TP, Beazley C, Montgomery SB, et al. Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. Bioinformatics 2010;26:2474-6.
    • (2010) Bioinformatics , vol.26 , pp. 2474-2476
    • Yang, T.P.1    Beazley, C.2    Montgomery, S.B.3
  • 34
    • 69949176863 scopus 로고    scopus 로고
    • Common regulatory variation impacts gene expression in a cell type-dependent manner
    • Dimas AS, Deutsch S, Stranger BE, et al. Common regulatory variation impacts gene expression in a cell type-dependent manner. Science 2009;325:1246-50.
    • (2009) Science , vol.325 , pp. 1246-1250
    • Dimas, A.S.1    Deutsch, S.2    Stranger, B.E.3
  • 35
    • 84855267424 scopus 로고    scopus 로고
    • Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans
    • Rotival M, Zeller T, Wild PS, et al. Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans. PLoS Genet 2011;7:e1002367.
    • (2011) PLoS Genet , vol.7 , pp. e1002367
    • Rotival, M.1    Zeller, T.2    Wild, P.S.3
  • 36
    • 84885645853 scopus 로고    scopus 로고
    • Transcriptome and genome sequencing uncovers functional variation in humans
    • Lappalainen T, Sammeth M, Friedlander MR, et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature 2013;501:506-11.
    • (2013) Nature , vol.501 , pp. 506-511
    • Lappalainen, T.1    Sammeth, M.2    Friedlander, M.R.3
  • 37
    • 84885018609 scopus 로고    scopus 로고
    • Systematic identification of trans eQTLs as putative drivers of known disease associations
    • Westra HJ, Peters MJ, Esko T, et al. Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat Genet 2013;45:1238-43.
    • (2013) Nat Genet , vol.45 , pp. 1238-1243
    • Westra, H.J.1    Peters, M.J.2    Esko, T.3
  • 38
    • 84896759364 scopus 로고    scopus 로고
    • Common genetic variants modulate pathogen-sensing responses in human dendritic cells
    • Lee MN, Ye C, Villani AC, et al. Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science 2014;343:1246980.
    • (2014) Science , vol.343 , pp. 1246980
    • Lee, M.N.1    Ye, C.2    Villani, A.C.3
  • 39
    • 84900338300 scopus 로고    scopus 로고
    • Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes
    • Raj T, Rothamel K, Mostafavi S, et al. Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes. Science 2014;344:519-23.
    • (2014) Science , vol.344 , pp. 519-523
    • Raj, T.1    Rothamel, K.2    Mostafavi, S.3
  • 40
    • 84860317030 scopus 로고    scopus 로고
    • Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles
    • Fairfax BP, Makino S, Radhakrishnan J, et al. Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles. Nat Genet 2012;44:502-10.
    • (2012) Nat Genet , vol.44 , pp. 502-510
    • Fairfax, B.P.1    Makino, S.2    Radhakrishnan, J.3
  • 41
    • 67349113436 scopus 로고    scopus 로고
    • Population differences in SLE susceptibility genes: STAT4 and BLK, but not PXK, are associated with systemic lupus erythematosus in Hong Kong Chinese
    • Yang W, Ng P, Zhao M, et al. Population differences in SLE susceptibility genes: STAT4 and BLK, but not PXK, are associated with systemic lupus erythematosus in Hong Kong Chinese. Genes Immun 2009;10:219-26.
    • (2009) Genes Immun , vol.10 , pp. 219-226
    • Yang, W.1    Ng, P.2    Zhao, M.3
  • 42
    • 84883145815 scopus 로고    scopus 로고
    • Epistatic interaction between genetic variants in susceptibility gene ETS1 correlates with IL-17 levels in SLE patients
    • Zhang J, Zhang Y, Zhang L, et al. Epistatic interaction between genetic variants in susceptibility gene ETS1 correlates with IL-17 levels in SLE patients. Ann Hum Genet 2013;77:344-50.
    • (2013) Ann Hum Genet , vol.77 , pp. 344-350
    • Zhang, J.1    Zhang, Y.2    Zhang, L.3
  • 43
    • 84891788593 scopus 로고    scopus 로고
    • The Mouse Genome Database: Integration of and access to knowledge about the laboratory mouse
    • Database issue
    • Blake JA, Bult CJ, Eppig JT, et al. Mouse Genome Database Group. The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res 2014 (Database issue); 42:D810-817.
    • (2014) Nucleic Acids Res , vol.42 , pp. D810-D817
    • Blake, J.A.1    Bult, C.J.2    Eppig, J.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.