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Volumn 67, Issue 6, 2016, Pages 1907-1917

Evidence for maternal control of seed size in maize from phenotypic and transcriptional analysis

Author keywords

Endosperm; gene expression; maize; maternal effect; seed development; seed size

Indexed keywords

ANATOMY AND HISTOLOGY; CROSS BREEDING; ENDOSPERM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC TRANSCRIPTION; GENETICS; HYBRIDIZATION; INBREEDING; MAIZE; ORGAN SIZE; PHENOTYPE; PLANT GENE; PLANT SEED;

EID: 84962869312     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erw006     Document Type: Article
Times cited : (34)

References (65)
  • 2
    • 84922241533 scopus 로고    scopus 로고
    • Imprinting in plants as a mechanism to generate seed phenotypic diversity
    • Bai F, Settles AM. 2014. Imprinting in plants as a mechanism to generate seed phenotypic diversity. Frontiers in Plant Science 5, 780.
    • (2014) Frontiers in Plant Science , vol.5 , pp. 780
    • Bai, F.1    Settles, A.M.2
  • 5
    • 0000943524 scopus 로고
    • Grain weight and its components in maize inbred lines
    • Capitanio R, Gentinetta E, Motto M. 1983. Grain weight and its components in maize inbred lines. Maydica 28, 365-379.
    • (1983) Maydica , vol.28 , pp. 365-379
    • Capitanio, R.1    Gentinetta, E.2    Motto, M.3
  • 7
    • 46149133782 scopus 로고
    • The number and sizes of starch granules in the wheat endosperm, and their association with grain weight
    • Chojkecki AJS, Gale MD, Bayliss MW. 1986. The number and sizes of starch granules in the wheat endosperm, and their association with grain weight. Annals of Botany 58, 819-831.
    • (1986) Annals of Botany , vol.58 , pp. 819-831
    • Chojkecki, A.J.S.1    Gale, M.D.2    Bayliss, M.W.3
  • 8
    • 0034891417 scopus 로고    scopus 로고
    • High temperatures during endosperm cell division in maize
    • Commuri PD, Jones RJ. 2001. High temperatures during endosperm cell division in maize. Crop Science 41, 1122-1130.
    • (2001) Crop Science , vol.41 , pp. 1122-1130
    • Commuri, P.D.1    Jones, R.J.2
  • 10
    • 33845618112 scopus 로고    scopus 로고
    • The molecular genetics of crop domestication
    • Doebley JF, Gaut BS, Smith BD. 2006. The molecular genetics of crop domestication. Cell 127, 1309-1321.
    • (2006) Cell , vol.127 , pp. 1309-1321
    • Doebley, J.F.1    Gaut, B.S.2    Smith, B.D.3
  • 12
    • 84862190456 scopus 로고    scopus 로고
    • Maternal control of seed size by eod3/cyp78a6 in Arabidopsis thaliana
    • Fang W, Wang Z, Cui R, Li J, Li Y. 2012. Maternal control of seed size by eod3/cyp78a6 in Arabidopsis thaliana. The Plant Journal 70, 929-939.
    • (2012) The Plant Journal , vol.70 , pp. 929-939
    • Fang, W.1    Wang, Z.2    Cui, R.3    Li, J.4    Li, Y.5
  • 13
    • 84885236036 scopus 로고    scopus 로고
    • Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds
    • Fatihi A, Zbierzak AM, Dörmann P. 2013. Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds. Plant Physiology 163, 973-985.
    • (2013) Plant Physiology , vol.163 , pp. 973-985
    • Fatihi, A.1    Zbierzak, A.M.2    Dörmann, P.3
  • 14
    • 34047093266 scopus 로고    scopus 로고
    • Convergent evolution of genomic imprinting in plants and mammals
    • Feil R, Berger F. 2007. Convergent evolution of genomic imprinting in plants and mammals. Trends in Genetics 23, 192-199.
    • (2007) Trends in Genetics , vol.23 , pp. 192-199
    • Feil, R.1    Berger, F.2
  • 16
    • 84899842837 scopus 로고    scopus 로고
    • Rice fie1 regulates seed size under heat stress by controlling early endosperm development
    • Folsom JJ, Begcy K, Hao X, Wang D, Walia H. 2014. Rice fie1 regulates seed size under heat stress by controlling early endosperm development. Plant Physiology 165, 238-248.
    • (2014) Plant Physiology , vol.165 , pp. 238-248
    • Folsom, J.J.1    Begcy, K.2    Hao, X.3    Wang, D.4    Walia, H.5
  • 18
    • 0036009915 scopus 로고    scopus 로고
    • Establishment of cereal endosperm expression domains: Identification and properties of a maize transfer cell-specific transcription factor, ZmMRP-1
    • Gómez E, Royo J, Guo Y, Thompson R, Hueros G. 2002. Establishment of cereal endosperm expression domains: identification and properties of a maize transfer cell-specific transcription factor, ZmMRP-1. The Plant Cell 14, 599-610.
    • (2002) The Plant Cell , vol.14 , pp. 599-610
    • Gómez, E.1    Royo, J.2    Guo, Y.3    Thompson, R.4    Hueros, G.5
  • 20
    • 58449136100 scopus 로고    scopus 로고
    • A recommendation for naming transcription factor proteins in the grasses
    • Gray J, Bevan M, Brutnell T, et al. 2009. A recommendation for naming transcription factor proteins in the grasses. Plant Physiology 149, 4-6.
    • (2009) Plant Physiology , vol.149 , pp. 4-6
    • Gray, J.1    Bevan, M.2    Brutnell, T.3
  • 21
    • 33748590010 scopus 로고    scopus 로고
    • Genetic and molecular basis of grain size and grain number and its relevance to grain productivity in higher plants
    • Gupta PK, Rustgi S, Kumar N. 2006. Genetic and molecular basis of grain size and grain number and its relevance to grain productivity in higher plants. Genome 49, 565-571.
    • (2006) Genome , vol.49 , pp. 565-571
    • Gupta, P.K.1    Rustgi, S.2    Kumar, N.3
  • 23
    • 84937511064 scopus 로고    scopus 로고
    • Insights into the effects of long-term artificial selection on seed size in maize
    • Hirsch CN, Flint-Garcia SA, Beissinger TM, et al. 2014. Insights into the effects of long-term artificial selection on seed size in maize. Genetics 198, 409-421.
    • (2014) Genetics , vol.198 , pp. 409-421
    • Hirsch, C.N.1    Flint-Garcia, S.A.2    Beissinger, T.M.3
  • 24
    • 84865502020 scopus 로고    scopus 로고
    • Evolution, function, and regulation of genomic imprinting in plant seed development
    • Jiang H, Köhler C. 2012. Evolution, function, and regulation of genomic imprinting in plant seed development. Journal of Experimental Botany 63, 4713-4722.
    • (2012) Journal of Experimental Botany , vol.63 , pp. 4713-4722
    • Jiang, H.1    Köhler, C.2
  • 25
    • 0000855989 scopus 로고    scopus 로고
    • Kernel sink capacity in maize: Genotypic and maternal regulation
    • Jones RJ, Schreiber BMN, Roessler JA. 1996. Kernel sink capacity in maize: genotypic and maternal regulation. Crop Science 36, 301-306.
    • (1996) Crop Science , vol.36 , pp. 301-306
    • Jones, R.J.1    Schreiber, B.M.N.2    Roessler, J.A.3
  • 26
  • 27
    • 84889095368 scopus 로고    scopus 로고
    • R package version 0.7.7
    • Kolde R. 2013. Pheatmap: pretty heatmaps. R package version 0.7.7 . Http://cran.R-project.Org/package=pheatmap.
    • (2013) Pheatmap: Pretty Heatmaps
    • Kolde, R.1
  • 28
    • 84873518657 scopus 로고    scopus 로고
    • Increased maternal genome dosage bypasses the requirement of the fis polycomb repressive complex 2 in Arabidopsis seed development
    • Kradolfer D, Hennig L, Köhler C. 2013. Increased maternal genome dosage bypasses the requirement of the fis polycomb repressive complex 2 in Arabidopsis seed development. PLoS Genetics 9, e1003163.
    • (2013) PLoS Genetics , vol.9 , pp. e1003163
    • Kradolfer, D.1    Hennig, L.2    Köhler, C.3
  • 30
    • 60549111634 scopus 로고    scopus 로고
    • Wgcna: An r package for weighted correlation network analysis
    • Langfelder P, Horvath S. 2008. Wgcna: an r package for weighted correlation network analysis. BMC Bioinformatics 9, 559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 31
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg S. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10, R25.
    • (2009) Genome Biology , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 32
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law JA, Jacobsen SE. 2010. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews Genetics 11, 204-220.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 33
    • 84933053269 scopus 로고    scopus 로고
    • Maternal control of seed size in plants
    • Li N, Li Y. 2015. Maternal control of seed size in plants. Journal of Experimental Botany 66, 1087-1097.
    • (2015) Journal of Experimental Botany , vol.66 , pp. 1087-1097
    • Li, N.1    Li, Y.2
  • 34
    • 85009089486 scopus 로고    scopus 로고
    • Characterization of the imprinting and expression patterns of ZAG2 in maize endosperm and embryo
    • Liu C, Wang J, Mei X, Deng X, Yu T, Liu X, Wang G, Liu Z, Cai Y. 2015. Characterization of the imprinting and expression patterns of ZAG2 in maize endosperm and embryo. Crop Journal 3, 74-79.
    • (2015) Crop Journal , vol.3 , pp. 74-79
    • Liu, C.1    Wang, J.2    Mei, X.3    Deng, X.4    Yu, T.5    Liu, X.6    Wang, G.7    Liu, Z.8    Cai, Y.9
  • 35
    • 84901029299 scopus 로고    scopus 로고
    • Endosperm transfer cell-specific genes and proteins: Structure, function and applications in biotechnology
    • Lopato S, Borisjuk N, Langridge P, Hrmova M. 2014. Endosperm transfer cell-specific genes and proteins: structure, function and applications in biotechnology. Frontiers in Plant Science 5, 64.
    • (2014) Frontiers in Plant Science , vol.5 , pp. 64
    • Lopato, S.1    Borisjuk, N.2    Langridge, P.3    Hrmova, M.4
  • 36
    • 84859464802 scopus 로고    scopus 로고
    • Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
    • Lu J, Zhang C, Baulcombe DC, Chen ZJ. 2012. Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proceedings of the National Academy of Sciences, USA 109, 5529-5534.
    • (2012) Proceedings of the National Academy of Sciences, USA , vol.109 , pp. 5529-5534
    • Lu, J.1    Zhang, C.2    Baulcombe, D.C.3    Chen, Z.J.4
  • 38
    • 0036898897 scopus 로고    scopus 로고
    • Histone mRNA expression: Multiple levels of cell cycle regulation and important developmental consequences
    • Marzluff WF, Duronio RJ. 2002. Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences. Current Opinion in Cell Biology 14, 692-699.
    • (2002) Current Opinion in Cell Biology , vol.14 , pp. 692-699
    • Marzluff, W.F.1    Duronio, R.J.2
  • 39
    • 0000879303 scopus 로고
    • The maize invertase-deficient miniature-1 seed mutation is associated with aberrant pedicel and endosperm development
    • Miller ME, Chourey PS. 1992. The maize invertase-deficient miniature-1 seed mutation is associated with aberrant pedicel and endosperm development. The Plant Cell 4, 297-305.
    • (1992) The Plant Cell , vol.4 , pp. 297-305
    • Miller, M.E.1    Chourey, P.S.2
  • 40
    • 0001380485 scopus 로고
    • Twenty cycles of divergent mass selection for seed size in corn
    • Odhiambo MO, Compton WA. 1987. Twenty cycles of divergent mass selection for seed size in corn. Crop Science 27, 1113-1116.
    • (1987) Crop Science , vol.27 , pp. 1113-1116
    • Odhiambo, M.O.1    Compton, W.A.2
  • 41
    • 0027384059 scopus 로고
    • Environmental and genetic maternal effects on seed characters in Nemophila menziesii
    • Platenkamp GAJ, Shaw RG. 1993. Environmental and genetic maternal effects on seed characters in Nemophila menziesii. Evolution 47, 540-555.
    • (1993) Evolution , vol.47 , pp. 540-555
    • Platenkamp, G.A.J.1    Shaw, R.G.2
  • 43
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. Bedtools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 44
    • 0000913885 scopus 로고
    • Endopsperm characteristics associated with rate of grain filling and kernel size in corn
    • Reddy V, Daynard T. 1983. Endopsperm characteristics associated with rate of grain filling and kernel size in corn. Maydica 28, 339-355.
    • (1983) Maydica , vol.28 , pp. 339-355
    • Reddy, V.1    Daynard, T.2
  • 46
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: A bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 47
    • 77956882887 scopus 로고    scopus 로고
    • Registration of KLS-30 and KSS-30 populations of maize
    • Russell WK. 2006. Registration of KLS-30 and KSS-30 populations of maize. Crop Science 46, 1405-1406.
    • (2006) Crop Science , vol.46 , pp. 1405-1406
    • Russell, W.K.1
  • 48
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS, Ware D, Fulton RS, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3
  • 53
    • 65449136284 scopus 로고    scopus 로고
    • Tophat: Discovering splice junctions with RNA-seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. Tophat: discovering splice junctions with RNA-seq. Bioinformatics 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 57
    • 0033388536 scopus 로고    scopus 로고
    • Heat stress during grain filling in maize: Effects on kernel growth and metabolism
    • Wilhelm EP, Mullen RE, Keeling PL, Singletary GW. 1999. Heat stress during grain filling in maize: effects on kernel growth and metabolism. Crop Science 39, 1733-1741.
    • (1999) Crop Science , vol.39 , pp. 1733-1741
    • Wilhelm, E.P.1    Mullen, R.E.2    Keeling, P.L.3    Singletary, G.W.4
  • 58
    • 84886516748 scopus 로고    scopus 로고
    • Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development
    • Xin M, Yang R, Li G, et al. 2013. Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. The Plant Cell 25, 3212-3227.
    • (2013) The Plant Cell , vol.25 , pp. 3212-3227
    • Xin, M.1    Yang, R.2    Li, G.3
  • 59
    • 84905922860 scopus 로고    scopus 로고
    • Adaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members
    • Xiong Y, Mei W, Kim E-D, Mukherjee K, Hassanein H, Barbazuk WB, Sung S, Kolaczkowski B, Kang B-H. 2014. Adaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members. BMC Plant Biology 14, 204.
    • (2014) BMC Plant Biology , vol.14 , pp. 204
    • Xiong, Y.1    Mei, W.2    Kim, E.-D.3    Mukherjee, K.4    Hassanein, H.5    Barbazuk, W.B.6    Sung, S.7    Kolaczkowski, B.8    Kang, B.-H.9
  • 61
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RMA-seq: Accounting for selection bias
    • Young M, Wakefield M, Smyth G, Oshlack A. 2010. Gene ontology analysis for RMA-seq: accounting for selection bias. Genome Biology 11, R14.
    • (2010) Genome Biology , vol.11 , pp. R14
    • Young, M.1    Wakefield, M.2    Smyth, G.3    Oshlack, A.4
  • 63
    • 84055178968 scopus 로고    scopus 로고
    • Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm
    • Zhang M, Zhao H, Xie S, et al. 2011. Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm. Proceedings of the National Academy of Sciences, USA 108, 20042-20047.
    • (2011) Proceedings of the National Academy of Sciences, USA , vol.108 , pp. 20042-20047
    • Zhang, M.1    Zhao, H.2    Xie, S.3
  • 64
    • 84896541166 scopus 로고    scopus 로고
    • QTL analysis of kernel-related traits in maize using an immortalized F2 population
    • Zhang Z, Liu Z, Hu Y, Li W, Fu Z, Ding D, Li H, Qiao M, Tang J. 2014. QTL analysis of kernel-related traits in maize using an immortalized F2 population. PLoS One 9, e89645.
    • (2014) PLoS One , vol.9 , pp. e89645
    • Zhang, Z.1    Liu, Z.2    Hu, Y.3    Li, W.4    Fu, Z.5    Ding, D.6    Li, H.7    Qiao, M.8    Tang, J.9
  • 65
    • 84928955984 scopus 로고    scopus 로고
    • Transcriptional regulation of zein gene expression in maize through the additive and synergistic action of opaque2, prolamine-box binding factor, and O2 heterodimerizing proteins
    • Zhang Z, Yang J, Wu Y. 2015. Transcriptional regulation of zein gene expression in maize through the additive and synergistic action of opaque2, prolamine-box binding factor, and O2 heterodimerizing proteins. The Plant Cell 27, 1162-1172.
    • (2015) The Plant Cell , vol.27 , pp. 1162-1172
    • Zhang, Z.1    Yang, J.2    Wu, Y.3


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