A major QTL controlling apple skin russeting maps on the linkage group 12 of 'Renetta Grigia di Torriana'

BMC Plant Biology

Volumn 15, Issue 1, 2015, Pages

  Falginella, Luigi ^a   Cipriani, Guido ^a   Monte, Corinne ^a   Gregori, Roberto ^b   Testolin, Raffaele ^a   Velasco, Riccardo ^c   Troggio, Michela ^c   Tartarini, Stefano ^b  

^a UNIVERSITY OF UDINE   (Italy)

^b UNIVERSITY OF BOLOGNA   (Italy)

^c RESEARCH AND INNOVATION CENTRE   (Italy)

Author keywords

Infinium Illumina SNP chip; Malus x domestica; Mapping; Quantitative Trait Locus (QTL); Russet; Single Nucleotide Polymorphism (SNP)

Indexed keywords

MALUS X DOMESTICA;

GENETIC MARKER;

CHROMOSOMAL MAPPING; CHROMOSOME SEGREGATION; CROSS BREEDING; DATA BASE; GENE LOCUS; GENETIC ASSOCIATION STUDY; GENETIC LINKAGE; GENETIC MARKER; GENETICS; HAPLOTYPE; MALUS; PHENOTYPE; PLANT CHROMOSOME; PLANT DISEASE; QUANTITATIVE TRAIT LOCUS;

CHROMOSOME MAPPING; CHROMOSOME SEGREGATION; CHROMOSOMES, PLANT; CROSSES, GENETIC; DATABASES AS TOPIC; GENETIC ASSOCIATION STUDIES; GENETIC LINKAGE; GENETIC LOCI; GENETIC MARKERS; HAPLOTYPES; MALUS; PHENOTYPE; PLANT DISEASES; QUANTITATIVE TRAIT LOCI;

EID: 84931086162     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-015-0507-4     Document Type: Article

References (73)

1. De Jong H. Inheritance of russeting in cultivated diploid potatoes. Potato Res. 1981;24:309-13.
2. Pavek JJ, Corsini DL. Inheritance of russet skin in diploid potatoes [abstract]. Amer Potato J. 1981;58:515-6.
3. Peet MM. Fruit cracking in tomato. HortTechnology. 1992;2:216-23.
4. Faust M, Shear CB. Russeting of apples, an interpretive review. HortSci. 1972;7(3):233-5.
5. Kikuchi A. On skin colour of the Japanese pear, and its inheritance (in Japanese). Contr Inst Plant Ind. 1930;8:1-50.
6. Andre CM, Larsen L, Burgess EJ, Jensen DJ, Cooney JM, Evers D, et al. Unusual immune-modulatory triterpene-caffeates in the skins of russeted varieties of apples and pears. J Agric Food Chem. 2013;61:2773-9.
7. Brown AG. Apples. In: Janick J, Moore JN, editors. Advances in fruit breeding. West Lafayette, Indiana: Purdue University Press; 1975. p. 3-37.
8. Tukey LD. Observations on the russeting of apples growing in plastic bags. Proc Amer Soc Hort Sci. 1969;74:30-9.
9. Faust M, Shear CB. Fine structure of the fruit surface of three apple cultivars. J Amer Soc Hort Sci. 1972;97(3):351-5.
10. Knoche M, Grimm E. Surface moisture induces microcracks in the cuticle of 'Golden Delicious' apple. HortSci. 2008;43(6):1929-31.
11. 4+7 application. J Amer Soc Hort Sci. 2011;136(3):159-64.
12. Creasy LL, Swartz HJ. Agents influencing russet on 'Golden Delicious' apple fruits. J Amer Soc Hort Sci. 1981;106:203-6.
13. Sanchez E, Soto JM, Uvalle JX, Hernandez AP, Ruiz JM, Romero L. Chemical treatments in 'Golden Delicious Spur' fruits in relation to russeting and nutritional status. J Plant Nutr. 2001;24:191-202.
14. Simons RK, Aubertin MP. Development of epidermal, hypodermal and cortical tissues in the Golden Delicious apple as influenced by induced mechanical injury. Proc Amer Soc Hort Sci. 1959;74:1-9.
15. Easterbrook MA, Fuller MM. Russeting of apples caused by apple rust mite Aculus schlechtendali (Acarina: Eriophyidae). Ann Appl Biol. 1986;109:1-9.
16. Daines R, Weber DJ, Bunderson ED, Roper T. Effect of early sprays on control of powdery mildew fruit russet on apples. Plant Dis. 1984;68:326-8.
17. Gildemacher P, Heijne B, Silvestri M, Houbraken J, Hoekstra ES, Theelen B, et al. Interactions between yeasts, fungicides and apple fruit russeting. FEMS Yeast Res. 2006;6:1149-56.
18. Walter TC. Russeting and cracking in apples: A review of world literature. Ann Rpt East Malling Res Sta for. 1967;1966:83-95.
19. Khanal BP, Grimm E, Knoche M. Russeting in apple and pear: a plastic periderm replaces a stiff cuticle. AoB Plants. 2013;5:pls048.
20. Bell HP. The origin of russeting in the Golden Russet apple. Can J Res. 1937;15:560-6.
21. Verner L. Histology of apple fruit tissue in relation to cracking. J Agr Res. 1938;57:813-24.
22. Skene DS. Cracking and russeting in apple fruits. Ann Rpt East Malling Res Sta for. 1965;1964:99-101.
23. Simons RK, Chu MC. Periderm morphology of mature 'Golden Delicious' apple with special reference to russeting. Sci Hortic. 1978;8:333-40.
24. Skene DS. The development of russet, rough russet and cracks on the fruit of the apple Cox's Orange Pippin during the course of the season. J Hort Sci. 1982;57(2):165-74.
25. Gardner VR, Toenjes W, Giefel M. Segregation in russeted sports of the Grimes apple. J Agr Res. 1948;76(11):225-9.
26. Gardner VR, Toenjes W, Giefel M, Kremer JC. Variability and segregation in the Golden Russet apple. J Agr Res. 1948;76(11):231-40.
27. Simons RK. Developmental changes in russet sports of Golden Delicious apples - morphological and anatomical comparison with normal fruit. Proc Amer Soc Hort Sci. 1960;76:41-51.
28. The National Fruit Collection. [ http://www.nationalfruitcollection.org.uk/index.php ]
29. Alston FH. Fruit Breeding. Rep E Malling Res Stn for 1972. 1973;X39:134.
30. Alston FH, Watkins R: Apple breeding at East Malling. In: Brown AG, Watkins R, Alston F, editors. Proceedings Eucarpia Symposium on Tree Fruit Breeding: 11-14 September 1973; Canterbury. 1975:14-29
31. Crane MB, Lewis D. Genetical studies in pears. V Vegetative Fruit Characters Heredity. 1949;3:85-97.
32. Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, et al. Development and validation of a 20 K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh). PLoS One. 2014;9(10):e110377.
33. Grattapaglia D, Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics. 1994;137:1121-37.
34. Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, et al. The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet. 2010;42(10):833-9.
35. Gygax M, Gianfranceschi L, Liebhard R, Kellerhals M, Gessler C, Patocchi A. Molecular markers linked to the apple scab resistance gene Vbj derived from Malus baccata jackii. Theor Appl Genet. 2004;109:1702-17.
36. Erdin N, Tartarini S, Broggini GAL, Gennari F, Sansavini S, Gessler C, et al. Mapping of the apple scab-resistance gene Vb. Genome. 2006;49:1238-45.
37. Bénaouf G, Parisi L. Genetics of host-pathogen relationships between Venturia inaequalis races 6 and 7 and Malus species. Phytopathology. 2000;90:236-42.
38. Dunemann F, Peil A, Urbanietz A, Garcia-Libreros T. Mapping of the apple powdery mildew resistance gene Pl1 and its genetic association with an NBS-LRR candidate resistance gene. Plant Breed. 2007;126(5):476-81.
39. Durel CE, Denancé C, Brisset MN. Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes 'Evereste' and Malus floribunda clone 821. Genome. 2009;52(2):139-47.
40. Celton JM, Martinez S, Jammes MJ, Bechti A, Salvi S, Legave JM, et al. Deciphering the genetic determinism of bud phenology in apple progenies: a new insight into chilling and heat requirement effects on flowering dates and positional candidate genes. New Phytol. 2011;192(2):378-92.
41. Longhi S, Moretto M, Viola R, Velasco R, Comprehensive CF, QTL. mapping survey dissects the complex fruit texture physiology in apple (Malus × domestica Borkh.). J Exp Bot. 2012;63(3):1107-21.
42. Verdu CF, Guyot S, Childebrand N, Bahut M, Celton JM, Gaillard S, et al. QTL analysis and candidate gene mapping for the polyphenol content in cider apple. PLoS One. 2014;9(10):e107103.
43. Souleyre EJ, Chagné D, Chen X, Tomes S, Turner RM, Wang MY, et al. The AAT1 locus is critical for the biosynthesis of esters contributing to 'ripe apple' flavour in 'Royal Gala' and 'Granny Smith' apples. Plant J. 2014;78(6):903-15.
44. Celton JM, Kelner JJ, Martinez S, Bechti A, Khelifi Touhami A, James MJ, et al. Fruit self-thinning: a trait to consider for genetic improvement of apple tree. PLoS One. 2014;9(3):e91016.
45. Kumar S, Chagné D, Bink MCAM, Volz RK, Whitworth C, Carlisle C. Genomic selection for fruit quality traits in apple (Malus × domestica Borkh.). PLoS One. 2012;7(5):e36674.
46. Han M, Liu Y, Zheng X, Yang J, Wang L, Wang S, et al. Construction of a genetic linkage map and QTL analysis for some fruit traits in pear. J Fruit Sci. 2010;27(4):496-503.
47. Song W, Wang C, Tian Y, Tian W, Yin H. SSR molecular markers linked to the fruit russet skin of pear. Acta Horticulturae Sinica. 2010;37(8):1325-8.
48. Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 2013;23(2):396-408.
49. Chagné D, Carlisle CM, Blond C, Volz RK, Whitworth CJ, Oraguzie NC, et al. Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple. BMC Genomics. 2007;8:212.
50. Dondini L, Pierantoni L, Ancarani V, D'Angelo M, Cho KH, Shin IS, et al. The inheritance of the red colour character in European pear (Pyrus communis) and its map position in the mutated cultivar 'Max Red Bartlett'. Plant Breed. 2008;127(5):524-6.
51. Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, et al. Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion. Plant J. 2007;52(3):485-98.
52. Panikashvili D, Savaldi-Goldstein S, Mandel T, Yifhar T, Franke RB, Höfer R, et al. The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. Plant Physiol. 2007;145(4):1345-60.
53. Luo B, Xue XY, Hu WL, Wang LJ, Chen XY. An ABC transporter gene of Arabidopsis thaliana, AtWBC11, is involved in cuticle development and prevention of organ fusion. Plant Cell Physiol. 2007;48(12):1790-802.
54. Panikashvili D, Shi JX, Bocobza S, Franke RB, Schreiber L, Aharoni A. The Arabidopsis DSO/ABCG11 transporter affects cutin metabolism in reproductive organs and suberin in roots. Mol Plant. 2010;3(3):563-75.
55. McFarlane HE, Shin JJ, Bird DA, Samuels AL. Arabidopsis ABCG transporters, which are required for export of diverse cuticular lipids, dimerize in different combinations. Plant Cell. 2010;22(9):3066-75.
56. Wang YZ, Dai MS, Zhang SJ, Shi ZB. Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color. PLoS One. 2014;9(1):e83675.
57. Wang YZ, Zhang S, Dai MS, Shi ZB. Pigmentation in sand pear (Pyrus pyrifolia) fruit: biochemical characterization, gene discovery and expression analysis with exocarp pigmentation mutant. Plant Mol Biol. 2014;85(1-2):123-34.
58. Legay S, Guerriero G, Deleruelle A, Lateur M, Evers D, André CM, Hausman J-F. Apple russeting as seen through the RNA-seq lens: strong alterations in the exocarp cell wall. Plant Molecular Biology 2015, doi:10.1007/s11103-015-0303-4
59. Janssen BJ, Thodey K, Schaffer RJ, Alba R, Balakrishnan L, Bishop R, et al. Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biol. 2008;8:16.
60. Liang W, Dondini L, De Franceschi P, Paris R, Sansavini S, Tartarini S. Genetic diversity, population structure and construction of a core collection of apple cultivars from Italian germplasm. Plant Mol Biol Rep, doi:10.1007/s11105-014-0754-9
61. Evans KM, Patocchi A, Rezzonico F, Mathis F, Durel CE, Fernández-Fernández F, et al. Genotyping of pedigreed apple breeding material with a genome-covering set of SSRs: trueness-to-type of cultivars and their parentages. Mol Breeding. 2011;28:535-47.
62. HiDRAS. High-quality Disease Resistant Apples for a Sustainable Agriculture. [ http://www.hidras.unimi.it/index.php ]
63. Han Y, Zheng D, Vimolmangkang S, Khan MA, Beever JE, Korban SS. Integration of physical and genetic maps in apple confirms whole-genome and segmental duplications in the apple genome. J Exp Bot. 2011;62(14):5117-30.
64. Wang A, Aldwinckle H, Forsline P, Main D, Fazio G, Brown S, et al. EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, the progenitor species of domestic apple. Mol Breeding. 2012;29:379-97.
65. Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, et al. Genome-wide SNP detection, validation, and development of an 8 K SNP array for apple. PLoS One. 2012;7(2):e31745.
66. Martins WS, Lucas DCS, Neves KFS, Bertioli DJ. WebSat-A web software for microsatellite marker development. Bioinformation. 2009;3(6):282-3.
67. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, et al. Primer3-new capabilities and interfaces. Nucleic Acids Res. 2012;40(15):e115.
68. GDR. Genome Database for Rosaceae. [ http://www.rosaceae.org/ ]
69. Van Ooijen JW. Joinmap® 4.0, Software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands: Kyazma B.V; 2006.
70. Van Ooijen JW. MapQTL® 5.0, Software for the mapping of quantitative trait loci in experimental populations. Wageningen, Netherlands: Kyazma B.V; 2004.
71. Chagné D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, et al. An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. Plant Physiol. 2013;161(1):225-39.
72. Konovalov DA, Manning C, Henshaw MT. KINGROUP: a program for pedigree relationship reconstruction and kin group assignments using genetic markers. Mol Ecol Notes. 2004;4:779-82.
73. Wang J. An estimator of pairwise relatedness using molecular markers. Genetics. 2002;160:1203-15.