Human sentinel surveillance of influenza and other respiratory viral pathogens in border areas of western Cambodia

PLoS ONE

Volumn 11, Issue 3, 2016, Pages

  Timmermans, Ans ^a,g   Melendrez, Melanie C ^b   Se, Youry ^c   Chuang, Ilin ^a   Samon, Nou ^c   Uthaimongkol, Nichapat ^a   Klungthong, Chonticha ^a   Manasatienkij, Wudtichai ^a   Thaisomboonsuk, Butsaya ^a   Tyner, Stuart D ^a,h   Rith, Sareth ^d   Horm, Viseth Srey ^d   Jarman, Richard G ^b   Bethell, Delia ^a   Chanarat, Nitima ^a   Pavlin, Julie ^e,i   Wongstitwilairoong, Tippa ^a   Saingam, Piyaporn ^a   El, But Sam ^c   Fukuda, Mark M ^a   Touch, Sok ^f   Sovann, Ly ^f   Fernandez, Stefan ^a   Buchy, Philippe ^d,j   Chanthap, Lon ^c   Saunders, David ^a   more..

^a ARMED FORCES RESEARCH INSTITUTE OF MEDICAL SCIENCES   (Thailand)

^b WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

^c Armed Forces Research Institute of Medical Sciences   (Cambodia)

^d INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

^e Armed Forces Health Surveillance Center   (United States)

^f Ministry of Health Cambodia   (Cambodia)

^g MAASTRICHT UNIVERSITY   (Netherlands)

^h US ARMY INSTITUTE OF SURGICAL RESEARCH   (United States)

ⁱ UNIFORMED SERVICES UNIVERSITY OF THE HEALTH SCIENCES   (United States)

^j GSK Vaccines   (Singapore)

more..

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ;

ADENOVIRIDAE; ADOLESCENT; ADULT; AGED; AMINO ACID ANALYSIS; AMINO ACID SUBSTITUTION; ANIMAL CELL; ANTIGENICITY; ANTIVIRAL SUSCEPTIBILITY; ARTICLE; CAMBODIA; CAMBODIAN; CHILD; CONTROLLED STUDY; COXSACKIEVIRUS A12; COXSACKIEVIRUS A4; COXSACKIEVIRUS A6; COXSACKIEVIRUS A8; COXSACKIEVIRUS A9; COXSACKIEVIRUS B3; COXSACKIEVIRUS B4; ECHOVIRUS E6; ECHOVIRUS E9; ENTEROVIRUS; ENTEROVIRUS 71; ENTEROVIRUS B; FEMALE; FLU LIKE SYNDROME; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC VARIABILITY; HEMAGGLUTININ GENE; HUMAN; HUMAN CELL; INFLUENZA; INFLUENZA A VIRUS (H1N1); INFLUENZA A VIRUS (H3N2); INFLUENZA VACCINATION; INFLUENZA VIRUS; MAJOR CLINICAL STUDY; MALE; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OUTPATIENT; PARAMYXOVIRINAE; PHYLOGENETIC TREE; PURIFYING SELECTION; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY VIRUS; RHINOVIRUS; SENTINEL SURVEILLANCE; SEQUENCE ANALYSIS; THAILAND; VIRUS CULTURE; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN; CLINICAL TRIAL; ENTEROVIRUS INFECTIONS; GENETICS; INFANT; INFLUENZA, HUMAN; MIDDLE AGED; MULTICENTER STUDY; PICORNAVIRIDAE INFECTIONS; PRESCHOOL CHILD;

ADOLESCENT; ADULT; AGED; CAMBODIA; CHILD; CHILD, PRESCHOOL; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; HUMANS; INFANT; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; MIDDLE AGED; PICORNAVIRIDAE INFECTIONS; RHINOVIRUS; SENTINEL SURVEILLANCE;

EID: 84962702137     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0152529     Document Type: Article

References (53)

1. World Health Organization (2012) Cambodia Health Service Delivery Profile, 2012.
2. Guerrier G, Goyet S, Cheng ET, Rammaert B, Borand L, Te V, et al. (2013) Acute viral lower respiratory tract infections in Cambodian children: clinical and epidemiologic characteristics. Pediatr Infect Dis J 32: e8-13. doi: 10.1097/INF.0b013e31826fd40d PMID: 22926214
3. Neuzil KM, Zhu Y, Griffin MR, Edwards KM, Thompson JM, Tollefson SJ, et al. (2002) Burden of interpandemic influenza in children younger than 5 years: a 25-year prospective study. J Infect Dis 185: 147-152. PMID: 11807687
4. Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC (2008) The genomic and epidemiological dynamics of human influenza A virus. Nature 453: 615-619. doi: 10.1038/nature06945 PMID: 18418375
5. Saha S, Chadha M, Al Mamun A, Rahman M, Sturm-Ramirez K, Chittaganpitch M, et al. (2014) Influenza seasonality and vaccination timing in tropical and subtropical areas of southern and south-eastern Asia. Bulletin of the World Health Organization 92: 318-330. doi: 10.2471/BLT.13.124412 PMID: 24839321
6. Mardy S, Ly S, Heng S, Vong S, Huch C, Nora C, et al. (2009) Influenza activity in Cambodia during 2006-2008. BMC Infect Dis 9: 168. doi: 10.1186/1471-2334-9-168 PMID: 19828051
7. Plotkin JB, Dushoff J (2003) Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus. Proc Natl Acad Sci U S A 100: 7152-7157. PMID: 12748378
8. Wrigley NG (1979) Electron microscopy of influenza virus. Br Med Bull 35: 35-38. PMID: 367484
9. Wiley DC, Wilson IA, Skehel JJ (1981) Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 289: 373-378. PMID: 6162101
10. Wiley DC, Wilson IA, Skehel JJ (1984) The hemagglutinin membrane glycoprotein of influenza virus. Biological Macromolecules and Assemblies, ed McPherson A 1: 299-336.
11. Wiley DC, Skehel JJ (1987) The structure and function of the hemagglutinin membrane glycoprotein of influenza virus. Annu Rev Biochem 56: 365-394. PMID: 3304138
12. Caton AJ, Raymond FL, Brownlee GG, Yewdell JW, Gerhard W (1983) Antigenic variation in influenza virus. Biochem Soc Trans 11: 435-441. PMID: 6194022
13. Smith DJ, Lapedes AS, de Jong JC, Bestebroer TM, Rimmelzwaan GF, Osterhaus AD, et al. (2004) Mapping the antigenic and genetic evolution of influenza virus. Science 305: 371-376. PMID: 15218094
14. Dempsey C (2008) Why ArcView 3.x is till in use. GIS Lounge: GIS Lounge.
15. Shayya WH (2013) An introduction to ArcView GIS. Morrisville State College: Morrisville State College.
16. World Health Organization (2008) A practical guide to harmonizing virological and epidemiological infuenza surveillance. In: Organization WH, editor. World Health Organization: World Health Organization.
17. Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Zaslavsky L, Tatusova T, et al. (2008) The influenza virus resource at the national center for biotechnology information. Journal of Virology 82: 596-601. PMID: 17942553
18. Bogner P, Capua I, Lipman DJ, Cox NJ (2006) A global initiative on sharing avian flu data. Nature 442.
19. Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113. PMID: 15318951
20. Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224. doi: 10.1093/molbev/msp259 PMID: 19854763
21. Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772.
22. Darriba D, Taboada GL, Doallo R, Posada D. (2012) jModelTest 2: more models, new heuristicsSea-View version 4: A multiplatform graphical user interface for sequence alignment and parallel computingphylogenetic tree building. Nat MethodsMol Biol Evol 927: 772221-772224.
23. Rambaut A (2009) FigTree v1. 3.1: Tree figure drawing tool. Available: http://treebioedacuk/software/figtree/.
24. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi: 10.1093/molbev/msr121 PMID: 21546353
25. Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679. PMID: 15509596
26. Delport W, Poon AF, Frost SD, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457. doi: 10.1093/bioinformatics/btq429 PMID: 20671151
27. Pond SL, Frost SD (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21: 2531-2533. PMID: 15713735
28. Poon AF, Frost SD, Pond SL (2009) Detecting signatures of selection from DNA sequences using Datamonkey. Methods Mol Biol 537: 163-183. doi: 10.1007/978-1-59745-251-9-8 PMID: 19378144
29. Coiras MT, Aguilar JC, Garcia ML, Casas I, Perez-Brena P (2004) Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays. J Med Virol 72: 484-495. PMID: 14748074
30. Singh S, Chow VT, Phoon MC, Chan KP, Poh CL (2002) Direct detection of enterovirus 71 (EV71) in clinical specimens from a hand, foot, and mouth disease outbreak in Singapore by reverse transcription-PCR with universal enterovirus and EV71-specific primers. J Clin Microbiol 40: 2823-2827. PMID: 12149336
31. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403-410. PMID: 2231712
32. Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Tatusova T (2007) FLAN: a web server for influenza virus genome annotation. Nucleic Acids Res 35: W280-284. PMID: 17545199
33. Kobayashi Y, Suzuki Y (2012) Evidence for N-glycan shielding of antigenic sites during evolution of human influenza A virus hemagglutinin. J Virol 86: 3446-3451. doi: 10.1128/JVI.06147-11 PMID: 22258255
34. Lee MS, Chen JS (2004) Predicting antigenic variants of influenza A/H3N2 viruses. Emerg Infect Dis 10: 1385-1390. PMID: 15496238
35. Chutinimitkul S, Chieochansin T, Payungporn S, Samransamruajkit R, Hiranras T, Theamboonlers A, et al. (2008) Molecular characterization and phylogenetic analysis of H1N1 and H3N2 human influenza A viruses among infants and children in Thailand. Virus Res 132: 122-131. PMID: 18160168
36. Chea N, Yi SD, Rith S, Seng H, Ieng V, Penh C, et al. (2014) Two clustered cases of confirmed influenza A(H5N1) virus infection, Cambodia, 2011. Euro Surveill 19.
37. Admin (2014) Avian Influenza. Cambodian Ministry of Health.
38. World Health Organization (2011) Avian Influenza-situation in Cambodia-update.
39. Gupta V, Dawood FS, Muangchana C, Lan PT, Xeuatvongsa A, Sovann L, et al. (2012) Influenza vaccination guidelines and vaccine sales in southeast Asia: 2008-2011. PLoS One 7: e52842. doi: 10.1371/journal.pone.0052842 PMID: 23285200
40. de Sa J, Mounier-Jack S, Darapheak C, Narann LK, Phetsouvanh R, Chanthakoummane N, et al. (2010) Responding to pandemic influenza in Cambodia and Lao PDR: challenges in moving from strategy to operation. Southeast Asian J Trop Med Public Health 41: 1104-1115. PMID: 21073031
41. Koel BF, Burke DF, Bestebroer TM, van der Vliet S, Zondag GC, Vervaet G, et al. (2013) Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution. Science 342: 976-979. doi: 10.1126/science.1244730 PMID: 24264991
42. Butler J, Hooper KA, Petrie S, Lee R, Maurer-Stroh S, Reh L, et al. (2014) Estimating the fitness advantage conferred by permissive neuraminidase mutations in recent oseltamivir-resistant A(H1N1)pdm09 influenza viruses. PLoS Pathog 10: e1004065. doi: 10.1371/journal.ppat.1004065 PMID: 24699865
43. Bloom JD, Gong LI, Baltimore D (2010) Permissive secondary mutations enable the evolution of influenza oseltamivir resistance. Science 328: 1272-1275. doi: 10.1126/science.1187816 PMID: 20522774
44. Vigerust DJ, Shepherd VL (2007) Virus glycosylation: role in virulence and immune interactions. Trends Microbiol 15: 211-218. PMID: 17398101
45. Bush RM, Bender CA, Subbarao K, Cox NJ, Fitch WM (1999) Predicting the evolution of human influenza A. Science 286: 1921-1925. PMID: 10583948
46. Buecher C, Mardy S, Wang W, Duong V, Vong S, Naughtin M, et al. (2010) Use of a multiplex PCR/RTPCR approach to assess the viral causes of influenza-like illnesses in Cambodia during three consecutive dry seasons. J Med Virol 82: 1762-1772. doi: 10.1002/jmv.21891 PMID: 20827775
47. Henrickson KJ (2003) Parainfluenza viruses. Clin Microbiol Rev 16: 242-264. PMID: 12692097
48. Gelfand HM, Holguin AH, Marchetti GE, Feorino PM (1963) A Continuing Surveillance of Enterovirus Infections in Healthy Children in Six United States Cities. I. Viruses Isolated during 1960 and 1961. Am J Hyg 78: 358-375. PMID: 14071359
49. Marier R, Rodriguez W, Chloupek RJ, Brandt CD, Kim HW, Baltimore RS, et al. (1975) Coxsackievirus B5 infection and aseptic meningitis in neonates and children. Am J Dis Child 129: 321-325. PMID: 1121962
50. Wilfert CM, Lauer BA, Cohen M, Costenbader ML, Myers E (1975) An epidemic of echovirus 18 meningitis. J Infect Dis 131: 75-78. PMID: 1167369
51. Zhu B, Zhong JY, Xia HM, Gong ST, Xiao MS, Xie JH, et al. (2010) [Etiology of hand, foot and mouth disease in Guangzhou in 2008]. Zhonghua Er Ke Za Zhi 48: 127-130. PMID: 20426938
52. Ledermann JP, Guillaumot L, Yug L, Saweyog SC, Tided M, Machieng P, et al. (2014) Aedes hensilli as a potential vector of Chikungunya and Zika viruses. PLoS Negl Trop Dis 8: e3188. doi: 10.1371/journal.pntd.0003188 PMID: 25299181
53. Singh S, Poh CL, Chow VT (2002) Complete sequence analyses of enterovirus 71 strains from fatal and non-fatal cases of the hand, foot and mouth disease outbreak in Singapore (2000). Microbiol Immunol 46: 801-808. PMID: 12516778