Evidence for N-Glycan shielding of antigenic sites during evolution of human influenza A virus hemagglutinin

Journal of Virology

Volumn 86, Issue 7, 2012, Pages 3446-3451

  Kobayashi, Yuki ^a   Suzuki, Yoshiyuki ^a  

^a NAGOYA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCAN; INFLUENZA VIRUS HEMAGGLUTININ; N GLYCAN; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; ANTIBODY COMBINING SITE; ANTIGEN BINDING; ANTIGENIC SITE; ARTICLE; EVOLUTION; INFLUENZA VIRUS A H3N2; N GLYCOSYLATION SITE; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN CARBOHYDRATE INTERACTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; THREE DIMENSIONAL IMAGING;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANTIBODIES, VIRAL; ANTIGENS, VIRAL; BIOLOGICAL EVOLUTION; GLYCOSYLATION; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYSACCHARIDES;

INFLUENZA A VIRUS;

EID: 84861302846     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.06147-11     Document Type: Article

References (32)

1. Abe Y, et al. 2004. Effect of the addition of oligosaccharides on the biological activities and antigenicity of influenza A/H3N2 virus hemagglutinin. J. Virol. 78:9605-9611.
2. Bastien N, et al. 2009. Parotitis in a child infected with triple-reassortant influenza A virus in Canada in 2007. J. Clin. Microbiol. 47:1896 -1898.
3. Bernstein HJ. 2000. Recent changes to RasMol, recombining the variants. Trends Biochem. Sci. 25:453- 455.
4. Blackburne BP, Hay AJ, Goldstein RA. 2008. Changing selective pressure during antigenic changes in human influenza H3. PLoS Pathog. 4:e1000058.
5. Bohne A, Lang E, von der Lieth CW. 1999. SWEET-WWW-based rapid 3D construction of oligo- and polysaccharides. Bioinformatics 15:767- 768.
6. Cherry JL, Lipman DJ, Nikolskaya A, Wolf YI. 2009. Evolutionary dynamics of N-glycosylation sites of influenza virus hemagglutinin. PLoS Curr. 1:RRN1001.
7. Cui J, Smith T, Robbins PW, Samuelson J. 2009. Darwinian selection for sites of Asn-linked glycosylation in phylogenetically disparate eukaryotes and viruses. Proc. Natl. Acad. Sci. U. S. A. 106:13421-13426.
8. Das SR, et al. 2010. Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain. PLoS Pathog. 6:e1001211.
9. Fitch WM. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20:406-416.
10. Hartigan J. 1973. Minimum evolution fits to a given tree. Biometrics 29:53- 65.
11. Igarashi M, Ito K, Kida H, Takada A. 2008. Genetically destined potentials for N-linked glycosylation of influenza virus hemagglutinin. Virology 376:323-329.
12. Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059 -3066.
13. Keil W, et al. 1985. Carbohydrates of influenza virus. Structural elucidation of the individual glycans of the FPV hemagglutinin by twodimensional 1H n.m.r. and methylation analysis. EMBO J. 4:2711-2720.
14. McHardy AC, Adams B. 2009. The role of genomics in tracking the evolution of influenza A virus. PLoS Pathog. 5:e1000566.
15. Mir-Shekari SY, Ashford DA, Harvey DJ, Dwek RA, Schulze IT. 1997. The glycosylation of the influenza A virus hemagglutinin by mammalian cells. A site-specific study. J. Biol. Chem. 272:4027- 4036.
16. Nelson MI, Holmes EC. 2007. The evolution of epidemic influenza. Nat. Rev. Genet. 8:196 -205.
17. Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817- 818.
18. Russell CA, et al. 2008. The global circulation of seasonal influenza A (H3N2) viruses. Science 320:340 -346.
19. Seidel W, et al. 1991. Intraepidemic variants of influenza virus H3 hemagglutinin differing in the number of carbohydrate side chains. Arch. Virol. 120:289 -296.
20. Shen J, Ma J, Wang Q. 2009. Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918. PLoS One 4:e7789.
21. Skehel JJ, et al. 1984. A carbohydrate side chain on hemagglutinins of Hong Kong influenza viruses inhibits recognition by a monoclonal antibody. Proc. Natl. Acad. Sci. U. S. A. 81:1779 -1783.
22. Smith GJ, et al. 2009. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459:1122-1125.
23. Suzuki Y. 2006. Natural selection on the influenza virus genome. Mol. Biol. Evol. 23:1902-1911.
24. Suzuki Y. 2004. Three-dimensional window analysis for detecting positive selection at structural regions of proteins. Mol. Biol. Evol. 21:2352- 2359.
25. Suzuki Y, Gojobori T. 1999. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 16:1315-1328.
26. Varki A, et al. 1999. Essentials of glycobiology. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
27. Wang CC, et al. 2009. Glycans on influenza hemagglutinin affect receptor binding and immune response. Proc. Natl. Acad. Sci. U. S. A. 106:18137- 18142.
28. Wang W, et al. 2010. Glycosylation at 158N of the hemagglutinin protein and receptor binding specificity synergistically affect the antigenicity and immunogenicity of a live attenuated H5N1 A/Vietnam/1203/2004 vaccine virus in ferrets. J. Virol. 84:6570-6577.
29. Wiley DC, Wilson IA, and Skehel JJ. 1981. Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 289:373-378.
30. Wilson IA, Skehel JJ, Wiley DC. 1981. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution. Nature 289: 366-373.
31. Wolf YI, Viboud C, Holmes EC, Koonin EV, Lipman DJ. 2006. Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus. Biol. Direct. 1:34.
32. Zhang M, et al. 2004. Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 14:1229 -1246.