메뉴 건너뛰기




Volumn 7, Issue FEB, 2016, Pages

The thanatomicrobiome: A Missing Piece of the Microbial Puzzle of Death

Author keywords

Death; Epinecrotic communities; Microbial forensics; Putrefaction; Thanatomicrobiome

Indexed keywords

AUTOLYSIS; DEATH; DECOMPOSITION; DEGRADATION; DNA EXTRACTION; EPINECROTIC MICROBIAL COMMUNITY; GENE EXPRESSION; HUMAN; MICROARRAY ANALYSIS; MICROBIAL COMMUNITY; MICROBIOME; NONHUMAN; POSTMORTEM CHANGE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SHORT SURVEY; THANATOMICROBIOME;

EID: 84962092833     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00225     Document Type: Short Survey
Times cited : (86)

References (42)
  • 1
    • 84955207743 scopus 로고    scopus 로고
    • The potential of high-throughput metagenomic sequencing of aquatic bacterial communities to estimate the postmortem submersion interval
    • Benbow, M. E., Pechal, J. L., Lang, J. M., Erb, R., and Wallace, J. R. (2015). The potential of high-throughput metagenomic sequencing of aquatic bacterial communities to estimate the postmortem submersion interval. J. Forensic Sci. 60, 1500-1510. doi: 10.1111/1556-4029.12859
    • (2015) J. Forensic Sci , vol.60 , pp. 1500-1510
    • Benbow, M.E.1    Pechal, J.L.2    Lang, J.M.3    Erb, R.4    Wallace, J.R.5
  • 2
    • 51249113414 scopus 로고    scopus 로고
    • The biochemical alteration of soil beneath a decomposing carcass
    • Benninger, L. A., Carter, D. O., and Forbes, S. L. (2008). The biochemical alteration of soil beneath a decomposing carcass. Forensic Sci. Int. 180, 70-75. doi: 10.1016/j.forsciint.2008.07.001
    • (2008) Forensic Sci. Int , vol.180 , pp. 70-75
    • Benninger, L.A.1    Carter, D.O.2    Forbes, S.L.3
  • 3
    • 0035882622 scopus 로고    scopus 로고
    • Factors affecting decomposition and Diptera colonization
    • Campobasso, C. P., Di Vella, G., and Introna, F. (2001). Factors affecting decomposition and Diptera colonization. Forensic Sci. Int. 120, 18-27. doi: 10.1016/S0379-0738(01)00411-X
    • (2001) Forensic Sci. Int , vol.120 , pp. 18-27
    • Campobasso, C.P.1    Di Vella, G.2    Introna, F.3
  • 4
    • 84906055621 scopus 로고    scopus 로고
    • Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans
    • Can, I., Javan, G. T., Pozhitkov, A. E., and Noble, P. A. (2014). Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans. J. Microbiol. Methods 106, 1-7. doi: 10.1016/j.mimet.2014.07.026
    • (2014) J. Microbiol. Methods , vol.106 , pp. 1-7
    • Can, I.1    Javan, G.T.2    Pozhitkov, A.E.3    Noble, P.A.4
  • 6
    • 84939954760 scopus 로고    scopus 로고
    • Seasonal variation of postmortem microbial communities
    • Carter, D. O., Metcalf, J. L., Bibat, A., and Knight, R. (2015). Seasonal variation of postmortem microbial communities. Forensic Sci. Med. Pathol. 11, 202-207. doi: 10.1007/s12024-015-9667-7
    • (2015) Forensic Sci. Med. Pathol , vol.11 , pp. 202-207
    • Carter, D.O.1    Metcalf, J.L.2    Bibat, A.3    Knight, R.4
  • 7
    • 47549111117 scopus 로고    scopus 로고
    • Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils
    • Carter, D. O., Yellowlees, D., and Tibbett, M. (2008). Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils. Appl. Soil Ecol. 40, 129-137. doi: 10.1016/j.apsoil.2008.03.010
    • (2008) Appl. Soil Ecol , vol.40 , pp. 129-137
    • Carter, D.O.1    Yellowlees, D.2    Tibbett, M.3
  • 8
    • 77953911312 scopus 로고    scopus 로고
    • Moisture can be the dominant environmental parameter governing cadaver decomposition in soil
    • Carter, D. O., Yellowlees, D., and Tibbett, M. (2010). Moisture can be the dominant environmental parameter governing cadaver decomposition in soil. Forensic Sci. Int. 200, 60-66. doi: 10.1016/j.forsciint.2010.03.031
    • (2010) Forensic Sci. Int , vol.200 , pp. 60-66
    • Carter, D.O.1    Yellowlees, D.2    Tibbett, M.3
  • 9
    • 84939202403 scopus 로고    scopus 로고
    • An initial investigation into the ecology of culturable aerobic postmortem bacteria
    • Chun, L. P., Miguel, M. J., Junkins, E. N., Forbes, S. L., and Carter, D. O. (2015). An initial investigation into the ecology of culturable aerobic postmortem bacteria. Sci. Justice 55, 394-401. doi: 10.1016/j.scijus.2015.07.003
    • (2015) Sci. Justice , vol.55 , pp. 394-401
    • Chun, L.P.1    Miguel, M.J.2    Junkins, E.N.3    Forbes, S.L.4    Carter, D.O.5
  • 10
    • 84938061915 scopus 로고    scopus 로고
    • Potential use of bacterial community succession in decaying human bone for estimating postmortem interval
    • Damann, F. E., Williams, D. E., and Layton, A. C. (2015). Potential use of bacterial community succession in decaying human bone for estimating postmortem interval. J. Forensic Sci. 60, 844-850. doi: 10.1111/1556-4029.12744
    • (2015) J. Forensic Sci , vol.60 , pp. 844-850
    • Damann, F.E.1    Williams, D.E.2    Layton, A.C.3
  • 11
    • 79957592426 scopus 로고    scopus 로고
    • Marine bacterial succession as a potential indicator of postmortem submersion interval
    • Dickson, G. C., Poulter, R. T., Maas, E. W., Probert, P. K., and Kieser, J. A. (2011). Marine bacterial succession as a potential indicator of postmortem submersion interval. Forensic Sci. Int. 209, 1-10. doi: 10.1016/j.forsciint.2010.10.016
    • (2011) Forensic Sci. Int , vol.209 , pp. 1-10
    • Dickson, G.C.1    Poulter, R.T.2    Maas, E.W.3    Probert, P.K.4    Kieser, J.A.5
  • 13
    • 0347961391 scopus 로고
    • On the bacteriology of normal organs
    • (Lond.)
    • Ford, W. W. (1901). On the bacteriology of normal organs. J. Hyg. (Lond.) 1, 277-284. doi: 10.1017/S0022172400000231
    • (1901) J. Hyg , vol.1 , pp. 277-284
    • Ford, W.W.1
  • 14
    • 0001244985 scopus 로고
    • Bacteremias in the agonal period
    • Fredette, J. W. (1916). Bacteremias in the agonal period. J. Lab. Clin. Med. 2, 180-188
    • (1916) J. Lab. Clin. Med , vol.2 , pp. 180-188
    • Fredette, J.W.1
  • 15
    • 80052722544 scopus 로고    scopus 로고
    • Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
    • Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Brown, C. T., et al. (2010). Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand. Genomic Sci. 3, 243-248. doi: 10.4056/sigs.1433550
    • (2010) Stand. Genomic Sci , vol.3 , pp. 243-248
    • Gilbert, J.A.1    Meyer, F.2    Antonopoulos, D.3    Balaji, P.4    Brown, C.T.5    Brown, C.T.6
  • 16
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: tools, techniques, and challenges
    • Hamady, M., and Knight, R. (2009). Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res. 19, 1141-1152. doi: 10.1101/gr.085464.108
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 17
    • 78650155792 scopus 로고    scopus 로고
    • Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences
    • Han, S., Liu, Y., Zhou, Z., He, S., Cao, Y., Shi, P., et al. (2010). Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences. Aquac. Res. 42, 47-56. doi: 10.1111/j.1365-2109.2010.02543.x
    • (2010) Aquac. Res , vol.42 , pp. 47-56
    • Han, S.1    Liu, Y.2    Zhou, Z.3    He, S.4    Cao, Y.5    Shi, P.6
  • 18
    • 84941175920 scopus 로고    scopus 로고
    • Estimating time since death from postmortem human gut microbial communities
    • Hauther, K. A., Cobaugh, K. L., Jantz, L. M., Sparer, T. E., and DeBruyn, J. M. (2015). Estimating time since death from postmortem human gut microbial communities. J. Forensic Sci. 60, 1234-1240. doi: 10.1111/1556-4029.12828
    • (2015) J. Forensic Sci , vol.60 , pp. 1234-1240
    • Hauther, K.A.1    Cobaugh, K.L.2    Jantz, L.M.3    Sparer, T.E.4    DeBruyn, J.M.5
  • 19
    • 84863759969 scopus 로고    scopus 로고
    • Comprehensive postmortem analyses of intestinal microbiota changes and bacterial translocation in human flora associated mice
    • Heimesaat, M. M., Boelke, S., Fischer, A., Haag, L. M., Loddenkemper, C., Kühl, A. A., et al. (2012). Comprehensive postmortem analyses of intestinal microbiota changes and bacterial translocation in human flora associated mice. PLoS ONE 7:e40758. doi: 10.1371/journal.pone.0040758
    • (2012) PLoS ONE , vol.7
    • Heimesaat, M.M.1    Boelke, S.2    Fischer, A.3    Haag, L.M.4    Loddenkemper, C.5    Kühl, A.A.6
  • 20
    • 77954863679 scopus 로고    scopus 로고
    • Characterization of the soil microbial community associated with the decomposition of a swine carcass
    • Howard, G. T., Duos, B., and Watson-Horzelski, E. J. (2010). Characterization of the soil microbial community associated with the decomposition of a swine carcass. Int. Biodeterior. Biodegradation 64, 300-304. doi: 10.1016/j.ibiod.2010.02.006
    • (2010) Int. Biodeterior. Biodegradation , vol.64 , pp. 300-304
    • Howard, G.T.1    Duos, B.2    Watson-Horzelski, E.J.3
  • 21
    • 84896963128 scopus 로고    scopus 로고
    • The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition
    • Hyde, E. R., Haarmann, D. P., Lynne, A. M., Bucheli, S. R., and Petrosino, J. F. (2013). The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS ONE 8:e77733. doi: 10.1371/journal.pone.0077733
    • (2013) PLoS ONE , vol.8
    • Hyde, E.R.1    Haarmann, D.P.2    Lynne, A.M.3    Bucheli, S.R.4    Petrosino, J.F.5
  • 22
    • 84939945220 scopus 로고    scopus 로고
    • Initial insights into bacterial succession during human decomposition
    • Hyde, E. R., Haarmann, D. P., Petrosino, J. F., Lynne, A. M., and Bucheli, S. R. (2015). Initial insights into bacterial succession during human decomposition. Int. J. Legal Med. 129, 661-671. doi: 10.1007/s00414-014-1128-4
    • (2015) Int. J. Legal Med , vol.129 , pp. 661-671
    • Hyde, E.R.1    Haarmann, D.P.2    Petrosino, J.F.3    Lynne, A.M.4    Bucheli, S.R.5
  • 23
    • 84947484774 scopus 로고    scopus 로고
    • The apoptotic thanatotranscriptome associated with the liver of cadavers
    • Javan, G. T., Can, I., Finley, S. J., and Soni, S. (2015). The apoptotic thanatotranscriptome associated with the liver of cadavers. Forensic Sci. Med. Pathol. 11, 509-516. doi: 10.1007/s12024-015-9704-6
    • (2015) Forensic Sci. Med. Pathol , vol.11 , pp. 509-516
    • Javan, G.T.1    Can, I.2    Finley, S.J.3    Soni, S.4
  • 25
    • 84861972212 scopus 로고    scopus 로고
    • Microbiota-targeted therapies: an ecological perspective
    • Lemon, K. P., Armitage, G. C., Relman, D. A., and Fischbach, M. A. (2012). Microbiota-targeted therapies: an ecological perspective. Sci. Transl. Med. 4, 137rv5. doi: 10.1126/scitranslmed.3004183
    • (2012) Sci. Transl. Med , vol.4
    • Lemon, K.P.1    Armitage, G.C.2    Relman, D.A.3    Fischbach, M.A.4
  • 26
    • 84885895443 scopus 로고    scopus 로고
    • A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
    • Metcalf, J. L., Parfrey, L. W., Gonzalez, A., Lauber, C. L., Knights, D., Ackermann, G., et al. (2013). A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife 2, e01104. doi: 10.7554/eLife.01104
    • (2013) Elife , vol.2
    • Metcalf, J.L.1    Parfrey, L.W.2    Gonzalez, A.3    Lauber, C.L.4    Knights, D.5    Ackermann, G.6
  • 27
    • 84955125742 scopus 로고    scopus 로고
    • Microbial community assembly and metabolic function during mammalian corpse decomposition
    • Metcalf, J. L., Xu, Z. Z., Weiss, S., Lax, S., Van Treuren, W., Hyde, E. R., et al. (2016). Microbial community assembly and metabolic function during mammalian corpse decomposition. Science 351, 158-162. doi: 10.1126/science.aad2646
    • (2016) Science , vol.351 , pp. 158-162
    • Metcalf, J.L.1    Xu, Z.Z.2    Weiss, S.3    Lax, S.4    Van Treuren, W.5    Hyde, E.R.6
  • 28
    • 30444459656 scopus 로고    scopus 로고
    • Postmortem bacteriology: a re-evaluation
    • Morris, J. A., Harrison, L. M., and Partridge, S. M. (2006). Postmortem bacteriology: a re-evaluation. J. Clin. Pathol. 59, 1-9. doi: 10.1136/jcp.2005.028183
    • (2006) J. Clin. Pathol , vol.59 , pp. 1-9
    • Morris, J.A.1    Harrison, L.M.2    Partridge, S.M.3
  • 29
    • 84891826092 scopus 로고    scopus 로고
    • The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing
    • Pechal, J. L., Crippen, T. L., Benbow, M. E., Tarone, A. M., Dowd, S., and Tomberlin, J. K. (2014). The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int. J. Legal Med. 128, 193-205. doi: 10.1007/s00414-013-0872-1
    • (2014) Int. J. Legal Med , vol.128 , pp. 193-205
    • Pechal, J.L.1    Crippen, T.L.2    Benbow, M.E.3    Tarone, A.M.4    Dowd, S.5    Tomberlin, J.K.6
  • 30
    • 84893387620 scopus 로고    scopus 로고
    • Microbial community functional change during vertebrate carrion decomposition
    • Pechal, J. L., Crippen, T. L., Tarone, A. M., Lewis, A. J., Tomberlin, J. K., and Benbow, M. E. (2013). Microbial community functional change during vertebrate carrion decomposition. PLoS ONE 8:e79035. doi: 10.1371/journal.pone.0079035
    • (2013) PLoS ONE , vol.8
    • Pechal, J.L.1    Crippen, T.L.2    Tarone, A.M.3    Lewis, A.J.4    Tomberlin, J.K.5    Benbow, M.E.6
  • 31
    • 34547800097 scopus 로고    scopus 로고
    • Pyrosequencing enumerates and contrasts soil microbial diversity
    • Roesch, L. F., Fulthorpe, R. R., Riva, A., Casella, G., Hadwin, A. K., Kent, A. D., et al. (2007). Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J. 1, 283-290. doi: 10.1038/ismej.2007.53
    • (2007) ISME J , vol.1 , pp. 283-290
    • Roesch, L.F.1    Fulthorpe, R.R.2    Riva, A.3    Casella, G.4    Hadwin, A.K.5    Kent, A.D.6
  • 33
    • 84961288867 scopus 로고    scopus 로고
    • Are we really vastly outnumbered? Revisiting the ratio of bacterial to host cells in humans
    • Sender, R., Fuchs, S., and Milo, R. (2016). Are we really vastly outnumbered? Revisiting the ratio of bacterial to host cells in humans. Cell 164, 337-340. doi: 10.1016/j.cell.2016.01.013
    • (2016) Cell , vol.164 , pp. 337-340
    • Sender, R.1    Fuchs, S.2    Milo, R.3
  • 34
    • 84929169824 scopus 로고    scopus 로고
    • Normal liver anatomy
    • Sibulesky, L. (2013). Normal liver anatomy. Clin. Liver Dis. 2, S1-S3. doi: 10.1002/cld.124
    • (2013) Clin. Liver Dis , vol.2 , pp. S1-S3
    • Sibulesky, L.1
  • 35
    • 84866332775 scopus 로고    scopus 로고
    • Growing unculturable bacteria
    • Stewart, E. J. (2012). Growing unculturable bacteria. J. Bacteriol. 194, 4151-4160. doi: 10.1128/JB.00345-12
    • (2012) J. Bacteriol , vol.194 , pp. 4151-4160
    • Stewart, E.J.1
  • 36
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • The Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
    • (2012) Nature , vol.486 , pp. 207-214
  • 37
    • 84880145697 scopus 로고    scopus 로고
    • Evaluation of postmortem bacterial migration using culturing and real-time quantitative PCR
    • Tuomisto, S., Karhunen, P. J., Vuento, R., Aittoniemi, J., and Pessi, T. (2013). Evaluation of postmortem bacterial migration using culturing and real-time quantitative PCR. J. Forensic Sci. 58, 910-916. doi: 10.1111/1556-4029.12124
    • (2013) J. Forensic Sci , vol.58 , pp. 910-916
    • Tuomisto, S.1    Karhunen, P.J.2    Vuento, R.3    Aittoniemi, J.4    Pessi, T.5
  • 38
    • 84899483493 scopus 로고    scopus 로고
    • Changes in gut bacterial populations and their translocation into liver and ascites in alcoholic liver cirrhotics
    • Tuomisto, S., Pessi, T., Collin, P., Vuento, R., Aittoniemi, J., and Karhunen, P. J. (2014). Changes in gut bacterial populations and their translocation into liver and ascites in alcoholic liver cirrhotics. BMC Gastroenterol. 14:40. doi: 10.1186/1471-230X-14-40
    • (2014) BMC Gastroenterol , vol.14 , pp. 40
    • Tuomisto, S.1    Pessi, T.2    Collin, P.3    Vuento, R.4    Aittoniemi, J.5    Karhunen, P.J.6
  • 39
    • 35348968286 scopus 로고    scopus 로고
    • The human microbiome project: exploring the microbial part of ourselves in a changing world
    • Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C., Knight, R., and Gordon, J. I. (2007). The human microbiome project: exploring the microbial part of ourselves in a changing world. Nature 449, 804-810. doi: 10.1038/nature06244
    • (2007) Nature , vol.449 , pp. 804-810
    • Turnbaugh, P.J.1    Ley, R.E.2    Hamady, M.3    Fraser-Liggett, C.4    Knight, R.5    Gordon, J.I.6
  • 41
    • 77951256096 scopus 로고    scopus 로고
    • Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)
    • Wu, S., Gao, T., Zheng, Y., Wang, W., Cheng, Y., and Wang, G. (2010). Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco). Aquaculture 30, 1-7. doi: 10.1016/j.aquaculture.2009.12.025
    • (2010) Aquaculture , vol.30 , pp. 1-7
    • Wu, S.1    Gao, T.2    Zheng, Y.3    Wang, W.4    Cheng, Y.5    Wang, G.6
  • 42
    • 84880055996 scopus 로고    scopus 로고
    • Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community
    • Zhou, J., Liu, W., Deng, Y., Jiang, Y. H., Xue, K., He, Z., et al. (2013). Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community. MBio 4, e00584-12. doi: 10.1128/mBio.00584-12
    • (2013) MBio , vol.4 , pp. e00584-e00612
    • Zhou, J.1    Liu, W.2    Deng, Y.3    Jiang, Y.H.4    Xue, K.5    He, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.