-
1
-
-
0036841365
-
A novel gene family in moss (Physcomitrella patens) shows sequence homology and a phylogenetic relationship with the TIR-NBS class of plant disease resistance genes
-
Akita M, Valkonen JP (2002) A novel gene family in moss (Physcomitrella patens) shows sequence homology and a phylogenetic relationship with the TIR-NBS class of plant disease resistance genes. J Mol Evol 55: 595-605
-
(2002)
J Mol Evol
, vol.55
, pp. 595-605
-
-
Akita, M.1
Valkonen, J.P.2
-
2
-
-
84890829647
-
The Amborella genome and the evolution of flowering plants
-
Amborella Genome Project (2013) The Amborella genome and the evolution of flowering plants. Science 342: 1241089
-
(2013)
Science
, vol.342
-
-
Amborella Genome Project1
-
3
-
-
40749095606
-
Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula
-
Ameline-Torregrosa C, Wang BB, O'Bleness MS, Deshpande S, Zhu H, Roe B, Young ND, Cannon SB (2008) Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol 146: 5-21
-
(2008)
Plant Physiol
, vol.146
, pp. 5-21
-
-
Ameline-Torregrosa, C.1
Wang, B.B.2
O'Bleness, M.S.3
Deshpande, S.4
Zhu, H.5
Roe, B.6
Young, N.D.7
Cannon, S.B.8
-
4
-
-
84870253181
-
Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics
-
Andolfo G, Sanseverino W, Rombauts S, Van de Peer Y, Bradeen JM, Carputo D, Frusciante L, Ercolano MR (2013) Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics. New Phytol 197: 223-237
-
(2013)
New Phytol
, vol.197
, pp. 223-237
-
-
Andolfo, G.1
Sanseverino, W.2
Rombauts, S.3
Van de Peer, Y.4
Bradeen, J.M.5
Carputo, D.6
Frusciante, L.7
Ercolano, M.R.8
-
5
-
-
84860549964
-
Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine
-
Ashfield T, Egan AN, Pfeil BE, Chen NW, Podicheti R, Ratnaparkhe MB, Ameline-Torregrosa C, Denny R, Cannon S, Doyle JJ, et al (2012) Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine. Plant Physiol 159: 336-354
-
(2012)
Plant Physiol
, vol.159
, pp. 336-354
-
-
Ashfield, T.1
Egan, A.N.2
Pfeil, B.E.3
Chen, N.W.4
Podicheti, R.5
Ratnaparkhe, M.B.6
Ameline-Torregrosa, C.7
Denny, R.8
Cannon, S.9
Doyle, J.J.10
-
6
-
-
84907043807
-
Evolutionary relationship of disease resistance genes in soybean and Arabidopsis specific for the Pseudomonas syringae effectors AvrB and AvrRpm1
-
Ashfield T, Redditt T, Russell A, Kessens R, Rodibaugh N, Galloway L, Kang Q, Podicheti R, Innes RW (2014) Evolutionary relationship of disease resistance genes in soybean and Arabidopsis specific for the Pseudomonas syringae effectors AvrB and AvrRpm1. Plant Physiol 166: 235-251
-
(2014)
Plant Physiol
, vol.166
, pp. 235-251
-
-
Ashfield, T.1
Redditt, T.2
Russell, A.3
Kessens, R.4
Rodibaugh, N.5
Galloway, L.6
Kang, Q.7
Podicheti, R.8
Innes, R.W.9
-
7
-
-
0036916368
-
Diversity in nucleotide binding siteleucine-rich repeat genes in cereals
-
Bai J, Pennill LA, Ning J, Lee SW, Ramalingam J, Webb CA, Zhao B, Sun Q, Nelson JC, Leach JE, et al (2002) Diversity in nucleotide binding siteleucine-rich repeat genes in cereals. Genome Res 12: 1871-1884
-
(2002)
Genome Res
, vol.12
, pp. 1871-1884
-
-
Bai, J.1
Pennill, L.A.2
Ning, J.3
Lee, S.W.4
Ramalingam, J.5
Webb, C.A.6
Zhao, B.7
Sun, Q.8
Nelson, J.C.9
Leach, J.E.10
-
8
-
-
0029197507
-
The value of prior knowledge in discovering motifs with MEME
-
Bailey TL, Elkan C (1995) The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol 3: 21-29
-
(1995)
Proc Int Conf Intell Syst Mol Biol
, vol.3
, pp. 21-29
-
-
Bailey, T.L.1
Elkan, C.2
-
9
-
-
0028113076
-
RPS2 of Arabidopsis thaliana: A leucinerich repeat class of plant disease resistance genes
-
Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz BJ (1994) RPS2 of Arabidopsis thaliana: a leucinerich repeat class of plant disease resistance genes. Science 265: 1856-1860
-
(1994)
Science
, vol.265
, pp. 1856-1860
-
-
Bent, A.F.1
Kunkel, B.N.2
Dahlbeck, D.3
Brown, K.L.4
Schmidt, R.5
Giraudat, J.6
Leung, J.7
Staskawicz, B.J.8
-
11
-
-
84920452784
-
Plant ecological strategies shift across the Cretaceous-Paleogene boundary
-
Blonder B, Royer DL, Johnson KR, Miller I, Enquist BJ (2014) Plant ecological strategies shift across the Cretaceous-Paleogene boundary. PLoS Biol 12: e1001949
-
(2014)
PLoS Biol
, vol.12
-
-
Blonder, B.1
Royer, D.L.2
Johnson, K.R.3
Miller, I.4
Enquist, B.J.5
-
12
-
-
80053620786
-
Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors
-
Bonardi V, Tang S, Stallmann A, Roberts M, Cherkis K, Dangl JL (2011) Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors. Proc Natl Acad Sci USA 108: 16463-16468
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 16463-16468
-
-
Bonardi, V.1
Tang, S.2
Stallmann, A.3
Roberts, M.4
Cherkis, K.5
Dangl, J.L.6
-
13
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
Bremer B, Bremer K, Chase MW, Fay MF, Reveal JL, Soltis DE, Soltis PS, Stevens PF, Anderberg AA, Moore MJ, et al (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161: 105-121
-
(2009)
Bot J Linn Soc
, vol.161
, pp. 105-121
-
-
Bremer, B.1
Bremer, K.2
Chase, M.W.3
Fay, M.F.4
Reveal, J.L.5
Soltis, D.E.6
Soltis, P.S.7
Stevens, P.F.8
Anderberg, A.A.9
Moore, M.J.10
-
14
-
-
2942620598
-
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
-
Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4: 10
-
(2004)
BMC Plant Biol
, vol.4
, pp. 10
-
-
Cannon, S.B.1
Mitra, A.2
Baumgarten, A.3
Young, N.D.4
May, G.5
-
15
-
-
0036212554
-
Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies
-
Cannon SB, Zhu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol 54: 548-562
-
(2002)
J Mol Evol
, vol.54
, pp. 548-562
-
-
Cannon, S.B.1
Zhu, H.2
Baumgarten, A.M.3
Spangler, R.4
May, G.5
Cook, D.R.6
Young, N.D.7
-
16
-
-
84866148911
-
Fungi and the rise of mammals
-
Casadevall A (2012) Fungi and the rise of mammals. PLoS Pathog 8: e1002808
-
(2012)
PLoS Pathog
, vol.8
-
-
Casadevall, A.1
-
17
-
-
79960505285
-
Cell death mediated by the Nterminal domains of a unique and highly conserved class of NB-LRR protein
-
Collier SM, Hamel LP, Moffett P (2011) Cell death mediated by the Nterminal domains of a unique and highly conserved class of NB-LRR protein. Mol Plant Microbe Interact 24: 918-931
-
(2011)
Mol Plant Microbe Interact
, vol.24
, pp. 918-931
-
-
Collier, S.M.1
Hamel, L.P.2
Moffett, P.3
-
18
-
-
84864696893
-
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
-
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, et al (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488: 213-217
-
(2012)
Nature
, vol.488
, pp. 213-217
-
-
D'Hont, A.1
Denoeud, F.2
Aury, J.M.3
Baurens, F.C.4
Carreel, F.5
Garsmeur, O.6
Noel, B.7
Bocs, S.8
Droc, G.9
Rouard, M.10
-
19
-
-
33846272114
-
Plant NBS-LRR proteins in pathogen sensing and host defense
-
DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7: 1243-1249
-
(2006)
Nat Immunol
, vol.7
, pp. 1243-1249
-
-
DeYoung, B.J.1
Innes, R.W.2
-
20
-
-
36549055666
-
The evolution of resistance genes in multiprotein plant resistance systems
-
Friedman AR, Baker BJ (2007) The evolution of resistance genes in multiprotein plant resistance systems. Curr Opin Genet Dev 17: 493-499
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 493-499
-
-
Friedman, A.R.1
Baker, B.J.2
-
21
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, et al (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40: D1178-D1186
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
-
22
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
23
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, AnisimovaM, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
24
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
25
-
-
80053598318
-
Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis
-
Guo YL, Fitz J, Schneeberger K, Ossowski S, Cao J, Weigel D (2011) Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol 157: 757-769
-
(2011)
Plant Physiol
, vol.157
, pp. 757-769
-
-
Guo, Y.L.1
Fitz, J.2
Schneeberger, K.3
Ossowski, S.4
Cao, J.5
Weigel, D.6
-
26
-
-
84926663837
-
Tree of life reveals clock-like speciation and diversification
-
Hedges SB, Marin J, Suleski M, Paymer M, Kumar S (2015) Tree of life reveals clock-like speciation and diversification. Mol Biol Evol 32: 835-845
-
(2015)
Mol Biol Evol
, vol.32
, pp. 835-845
-
-
Hedges, S.B.1
Marin, J.2
Suleski, M.3
Paymer, M.4
Kumar, S.5
-
27
-
-
79958286325
-
Plant immunity: Evolutionary insights from PBS1, Pto, and RIN4
-
Hou S, Yang Y, Wu D, Zhang C (2011) Plant immunity: evolutionary insights from PBS1, Pto, and RIN4. Plant Signal Behav 6: 794-799
-
(2011)
Plant Signal Behav
, vol.6
, pp. 794-799
-
-
Hou, S.1
Yang, Y.2
Wu, D.3
Zhang, C.4
-
28
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, et al (2011) Ancestral polyploidy in seed plants and angiosperms. Nature 473: 97-100
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
Wickett, N.J.2
Ayyampalayam, S.3
Chanderbali, A.S.4
Landherr, L.5
Ralph, P.E.6
Tomsho, L.P.7
Hu, Y.8
Liang, H.9
Soltis, P.S.10
-
29
-
-
84895880054
-
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
-
Kim S, Park M, Yeom SI, Kim YM, Lee JM, Lee HA, Seo E, Choi J, Cheong K, Kim KT, et al (2014) Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Nat Genet 46: 270-278
-
(2014)
Nat Genet
, vol.46
, pp. 270-278
-
-
Kim, S.1
Park, M.2
Yeom, S.I.3
Kim, Y.M.4
Lee, J.M.5
Lee, H.A.6
Seo, E.7
Choi, J.8
Cheong, K.9
Kim, K.T.10
-
30
-
-
40949127893
-
Genome-wide identification of NBS resistance genes in Populus trichocarpa
-
Kohler A, Rinaldi C, Duplessis S, Baucher M, Geelen D, Duchaussoy F, Meyers BC, Boerjan W, Martin F (2008) Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol Biol 66: 619-636
-
(2008)
Plant Mol Biol
, vol.66
, pp. 619-636
-
-
Kohler, A.1
Rinaldi, C.2
Duplessis, S.3
Baucher, M.4
Geelen, D.5
Duchaussoy, F.6
Meyers, B.C.7
Boerjan, W.8
Martin, F.9
-
31
-
-
25144446148
-
Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
-
Lavin M, Herendeen PS, Wojciechowski MF (2005) Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol 54: 575-594
-
(2005)
Syst Biol
, vol.54
, pp. 575-594
-
-
Lavin, M.1
Herendeen, P.S.2
Wojciechowski, M.F.3
-
32
-
-
77951651632
-
Unique evolutionary pattern of numbers of gramineous NBS-LRR genes
-
Li J, Ding J, Zhang W, Zhang Y, Tang P, Chen JQ, Tian D, Yang S (2010) Unique evolutionary pattern of numbers of gramineous NBS-LRR genes. Mol Genet Genomics 283: 427-438
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 427-438
-
-
Li, J.1
Ding, J.2
Zhang, W.3
Zhang, Y.4
Tang, P.5
Chen, J.Q.6
Tian, D.7
Yang, S.8
-
33
-
-
84923304040
-
Differential evolution of members of the rhomboid gene family with conservative and divergent patterns
-
Li Q, Zhang N, Zhang L, Ma H (2015) Differential evolution of members of the rhomboid gene family with conservative and divergent patterns. New Phytol 206: 368-380
-
(2015)
New Phytol
, vol.206
, pp. 368-380
-
-
Li, Q.1
Zhang, N.2
Zhang, L.3
Ma, H.4
-
34
-
-
84877840224
-
Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae
-
Lin X, Zhang Y, Kuang H, Chen J (2013) Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae. BMC Genomics 14: 335
-
(2013)
BMC Genomics
, vol.14
, pp. 335
-
-
Lin, X.1
Zhang, Y.2
Kuang, H.3
Chen, J.4
-
35
-
-
67649959828
-
RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack
-
Liu J, Elmore JM, Fuglsang AT, Palmgren MG, Staskawicz BJ, Coaker G (2009) RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack. PLoS Biol 7: e1000139
-
(2009)
PLoS Biol
, vol.7
-
-
Liu, J.1
Elmore, J.M.2
Fuglsang, A.T.3
Palmgren, M.G.4
Staskawicz, B.J.5
Coaker, G.6
-
36
-
-
34548653262
-
Recent progress in elucidating the structure, function and evolution of disease resistance genes in plants
-
Liu J, Liu X, Dai L, Wang G (2007) Recent progress in elucidating the structure, function and evolution of disease resistance genes in plants. J Genet Genomics 34: 765-776
-
(2007)
J Genet Genomics
, vol.34
, pp. 765-776
-
-
Liu, J.1
Liu, X.2
Dai, L.3
Wang, G.4
-
37
-
-
84859495841
-
Genomewide identification and mapping of NBS-encoding resistance genes in Solanum tuberosum group phureja
-
Lozano R, Ponce O, Ramirez M, Mostajo N, Orjeda G (2012) Genomewide identification and mapping of NBS-encoding resistance genes in Solanum tuberosum group phureja. PLoS One 7: e34775
-
(2012)
PLoS One
, vol.7
-
-
Lozano, R.1
Ponce, O.2
Ramirez, M.3
Mostajo, N.4
Orjeda, G.5
-
38
-
-
84860552184
-
Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family
-
Luo S, Zhang Y, Hu Q, Chen J, Li K, Lu C, Liu H, Wang W, Kuang H (2012) Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family. Plant Physiol 159: 197-210
-
(2012)
Plant Physiol
, vol.159
, pp. 197-210
-
-
Luo, S.1
Zhang, Y.2
Hu, Q.3
Chen, J.4
Li, K.5
Lu, C.6
Liu, H.7
Wang, W.8
Kuang, H.9
-
39
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
40
-
-
84884508060
-
Fusarium pathogenomics
-
Ma LJ, Geiser DM, Proctor RH, Rooney AP, O'Donnell K, Trail F, Gardiner DM, Manners JM, Kazan K (2013) Fusarium pathogenomics. Annu Rev Microbiol 67: 399-416
-
(2013)
Annu Rev Microbiol
, vol.67
, pp. 399-416
-
-
Ma, L.J.1
Geiser, D.M.2
Proctor, R.H.3
Rooney, A.P.4
O'Donnell, K.5
Trail, F.6
Gardiner, D.M.7
Manners, J.M.8
Kazan, K.9
-
41
-
-
0037423306
-
Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance
-
Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL (2003) Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell 112: 379-389
-
(2003)
Cell
, vol.112
, pp. 379-389
-
-
Mackey, D.1
Belkhadir, Y.2
Alonso, J.M.3
Ecker, J.R.4
Dangl, J.L.5
-
42
-
-
0037155687
-
RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis
-
Mackey D, Holt BF III, Wiig A, Dangl JL (2002) RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108: 743-754
-
(2002)
Cell
, vol.108
, pp. 743-754
-
-
Mackey, D.1
Holt, B.F.2
Wiig, A.3
Dangl, J.L.4
-
43
-
-
84855655273
-
Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes
-
Malacarne G, Perazzolli M, Cestaro A, Sterck L, Fontana P, Van de Peer Y, Viola R, Velasco R, Salamini F (2012) Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes. PLoS One 7: e29762
-
(2012)
PLoS One
, vol.7
-
-
Malacarne, G.1
Perazzolli, M.2
Cestaro, A.3
Sterck, L.4
Fontana, P.5
Van de Peer, Y.6
Viola, R.7
Velasco, R.8
Salamini, F.9
-
45
-
-
0033231602
-
Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotidebinding superfamily
-
Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotidebinding superfamily. Plant J 20: 317-332
-
(1999)
Plant J
, vol.20
, pp. 317-332
-
-
Meyers, B.C.1
Dickerman, A.W.2
Michelmore, R.W.3
Sivaramakrishnan, S.4
Sobral, B.W.5
Young, N.D.6
-
47
-
-
0037390933
-
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
-
Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15: 809-834
-
(2003)
Plant Cell
, vol.15
, pp. 809-834
-
-
Meyers, B.C.1
Kozik, A.2
Griego, A.3
Kuang, H.4
Michelmore, R.W.5
-
49
-
-
71349087912
-
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa
-
Mun JH, Yu HJ, Park S, Park BS (2009) Genome-wide identification of NBS-encoding resistance genes in Brassica rapa. Mol Genet Genomics 282: 617-631
-
(2009)
Mol Genet Genomics
, vol.282
, pp. 617-631
-
-
Mun, J.H.1
Yu, H.J.2
Park, S.3
Park, B.S.4
-
50
-
-
12444288067
-
Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis
-
Nobuta K, Ashfield T, Kim S, Innes RW (2005) Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis. Mol Plant Microbe Interact 18: 103-109
-
(2005)
Mol Plant Microbe Interact
, vol.18
, pp. 103-109
-
-
Nobuta, K.1
Ashfield, T.2
Kim, S.3
Innes, R.W.4
-
51
-
-
20144382377
-
NRG1, a CCNB-LRR protein, together with N, a TIR-NB-LRR protein, mediates resistance against tobacco mosaic virus
-
Peart JR, Mestre P, Lu R, Malcuit I, Baulcombe DC (2005) NRG1, a CCNB-LRR protein, together with N, a TIR-NB-LRR protein, mediates resistance against tobacco mosaic virus. Curr Biol 15: 968-973
-
(2005)
Curr Biol
, vol.15
, pp. 968-973
-
-
Peart, J.R.1
Mestre, P.2
Lu, R.3
Malcuit, I.4
Baulcombe, D.C.5
-
52
-
-
84875718824
-
The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)
-
Peng Z, Lu Y, Li L, Zhao Q, Feng Q, Gao Z, Lu H, Hu T, Yao N, Liu K, et al (2013) The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla). Nat Genet 45: 456-461
-
(2013)
Nat Genet
, vol.45
, pp. 456-461
-
-
Peng, Z.1
Lu, Y.2
Li, L.3
Zhao, Q.4
Feng, Q.5
Gao, Z.6
Lu, H.7
Hu, T.8
Yao, N.9
Liu, K.10
-
53
-
-
67449161515
-
Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family
-
Porter BW, Paidi M, Ming R, Alam M, Nishijima WT, Zhu YJ (2009) Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Mol Genet Genomics 281: 609-626
-
(2009)
Mol Genet Genomics
, vol.281
, pp. 609-626
-
-
Porter, B.W.1
Paidi, M.2
Ming, R.3
Alam, M.4
Nishijima, W.T.5
Zhu, Y.J.6
-
54
-
-
84939133178
-
Expansion and functional divergence of Jumonji C-containing histone demethylases: Significance of duplications in ancestral angiosperms and vertebrates
-
Qian S, Wang Y, Ma H, Zhang L (2015) Expansion and functional divergence of Jumonji C-containing histone demethylases: significance of duplications in ancestral angiosperms and vertebrates. Plant Physiol 168: 1321-1337
-
(2015)
Plant Physiol
, vol.168
, pp. 1321-1337
-
-
Qian, S.1
Wang, Y.2
Ma, H.3
Zhang, L.4
-
55
-
-
84898022114
-
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
-
Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M, Luo Y, et al (2014) Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization. Proc Natl Acad Sci USA 111: 5135-5140
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 5135-5140
-
-
Qin, C.1
Yu, C.2
Shen, Y.3
Fang, X.4
Chen, L.5
Min, J.6
Cheng, J.7
Zhao, S.8
Xu, M.9
Luo, Y.10
-
56
-
-
0032514486
-
The gain of three mitochondrial introns identifies liverworts as the earliest land plants
-
Qiu YL, Cho Y, Cox JC, Palmer JD(1998) The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 394: 671-674
-
(1998)
Nature
, vol.394
, pp. 671-674
-
-
Qiu, Y.L.1
Cho, Y.2
Cox, J.C.3
Palmer, J.D.4
-
58
-
-
84907042205
-
Long-term evolution of nucleotidebinding site-leucine-rich repeat genes: Understanding gained from and beyond the legume family
-
Shao ZQ, Zhang YM, Hang YY, Xue JY, Zhou GC, Wu P, Wu XY, Wu XZ, Wang Q, Wang B, et al (2014) Long-term evolution of nucleotidebinding site-leucine-rich repeat genes: understanding gained from and beyond the legume family. Plant Physiol 166: 217-234
-
(2014)
Plant Physiol
, vol.166
, pp. 217-234
-
-
Shao, Z.Q.1
Zhang, Y.M.2
Hang, Y.Y.3
Xue, J.Y.4
Zhou, G.C.5
Wu, P.6
Wu, X.Y.7
Wu, X.Z.8
Wang, Q.9
Wang, B.10
-
59
-
-
84962084873
-
Computational identification of microRNA-targeted nucleotide-binding site-leucine-rich repeat genes in plants
-
Shao ZQ, Zhang YM, Wang B, Chen JQ (2015) Computational identification of microRNA-targeted nucleotide-binding site-leucine-rich repeat genes in plants. Bio Protoc 5: e1637
-
(2015)
Bio Protoc
, vol.5
-
-
Shao, Z.Q.1
Zhang, Y.M.2
Wang, B.3
Chen, J.Q.4
-
60
-
-
84888418901
-
Phylogenetic lineages in the Botryosphaeriales: A systematic and evolutionary framework
-
Slippers B, Boissin E, Phillips AJ, Groenewald JZ, Lombard L, Wingfield MJ, Postma A, Burgess T, Crous PW (2013) Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Stud Mycol 76: 31-49
-
(2013)
Stud Mycol
, vol.76
, pp. 31-49
-
-
Slippers, B.1
Boissin, E.2
Phillips, A.J.3
Groenewald, J.Z.4
Lombard, L.5
Wingfield, M.J.6
Postma, A.7
Burgess, T.8
Crous, P.W.9
-
61
-
-
63449136381
-
Relationships among phaseoloid legumes based on sequences from eight chloroplast regions
-
Stefanovic S, Pfeil BE, Palmer JD, Doyle JJ (2009) Relationships among phaseoloid legumes based on sequences from eight chloroplast regions. Syst Bot 34: 115-128
-
(2009)
Syst Bot
, vol.34
, pp. 115-128
-
-
Stefanovic, S.1
Pfeil, B.E.2
Palmer, J.D.3
Doyle, J.J.4
-
62
-
-
84866458802
-
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
-
Stolzer M, Lai H, Xu M, Sathaye D, Vernot B, Durand D (2012) Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. Bioinformatics 28: i409-i415
-
(2012)
Bioinformatics
, vol.28
, pp. i409-i415
-
-
Stolzer, M.1
Lai, H.2
Xu, M.3
Sathaye, D.4
Vernot, B.5
Durand, D.6
-
63
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
64
-
-
42549120705
-
Synteny and collinearity in plant genomes
-
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH (2008) Synteny and collinearity in plant genomes. Science 320: 486-488
-
(2008)
Science
, vol.320
, pp. 486-488
-
-
Tang, H.1
Bowers, J.E.2
Wang, X.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
65
-
-
77249088648
-
TIR-NBS-LRR genes are rare in monocots: Evidence from diverse monocot orders
-
Tarr DE, Alexander HM (2009) TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders. BMC Res Notes 2: 197
-
(2009)
BMC Res Notes
, vol.2
, pp. 197
-
-
Tarr, D.E.1
Alexander, H.M.2
-
66
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
67
-
-
1542377435
-
Fungal proliferation at the Cretaceous-Tertiary boundary
-
Vajda V, McLoughlin S (2004) Fungal proliferation at the Cretaceous-Tertiary boundary. Science 303: 1489
-
(2004)
Science
, vol.303
, pp. 1489
-
-
Vajda, V.1
McLoughlin, S.2
-
68
-
-
84905647470
-
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary
-
Vanneste K, Baele G, Maere S, Van de Peer Y (2014) Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary. Genome Res 24: 1334-1347
-
(2014)
Genome Res
, vol.24
, pp. 1334-1347
-
-
Vanneste, K.1
Baele, G.2
Maere, S.3
Van de Peer, Y.4
-
69
-
-
84899070971
-
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis
-
Wang L, Yu S, Tong C, Zhao Y, Liu Y, Song C, Zhang Y, Zhang X, Wang Y, Hua W, et al (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biol 15: R39
-
(2014)
Genome Biol
, vol.15
-
-
Wang, L.1
Yu, S.2
Tong, C.3
Zhao, Y.4
Liu, Y.5
Song, C.6
Zhang, Y.7
Zhang, X.8
Wang, Y.9
Hua, W.10
-
70
-
-
0035808530
-
Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8
-
Xiao S, Ellwood S, Calis O, Patrick E, Li T, Coleman M, Turner JG (2001) Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8. Science 291: 118-120
-
(2001)
Science
, vol.291
, pp. 118-120
-
-
Xiao, S.1
Ellwood, S.2
Calis, O.3
Patrick, E.4
Li, T.5
Coleman, M.6
Turner, J.G.7
-
71
-
-
84866169744
-
A primary survey on bryophyte species reveals two novel classes of nucleotide-binding site (NBS) genes
-
Xue JY, Wang Y, Wu P, Wang Q, Yang LT, Pan XH, Wang B, Chen JQ (2012) A primary survey on bryophyte species reveals two novel classes of nucleotide-binding site (NBS) genes. PLoS One 7: e36700
-
(2012)
PLoS One
, vol.7
-
-
Xue, J.Y.1
Wang, Y.2
Wu, P.3
Wang, Q.4
Yang, L.T.5
Pan, X.H.6
Wang, B.7
Chen, J.Q.8
-
72
-
-
84879701074
-
The reference genome of the halophytic plant Eutrema salsugineum
-
Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, et al (2013) The reference genome of the halophytic plant Eutrema salsugineum. Front Plant Sci 4: 46
-
(2013)
Front Plant Sci
, vol.4
, pp. 46
-
-
Yang, R.1
Jarvis, D.E.2
Chen, H.3
Beilstein, M.A.4
Grimwood, J.5
Jenkins, J.6
Shu, S.7
Prochnik, S.8
Xin, M.9
Ma, C.10
-
73
-
-
33748532213
-
Genome-wide investigation on the genetic variations of rice disease resistance genes
-
Yang S, Feng Z, Zhang X, Jiang K, Jin X, Hang Y, Chen JQ, Tian D (2006) Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Mol Biol 62: 181-193
-
(2006)
Plant Mol Biol
, vol.62
, pp. 181-193
-
-
Yang, S.1
Feng, Z.2
Zhang, X.3
Jiang, K.4
Jin, X.5
Hang, Y.6
Chen, J.Q.7
Tian, D.8
-
74
-
-
49749103942
-
Recent duplications dominate NBS-encoding gene expansion in two woody species
-
Yang S, Zhang X, Yue JX, Tian D, Chen JQ (2008) Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Genet Genomics 280: 187-198
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 187-198
-
-
Yang, S.1
Zhang, X.2
Yue, J.X.3
Tian, D.4
Chen, J.Q.5
-
75
-
-
84919900743
-
Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times
-
Zeng L, Zhang Q, Sun R, Kong H, Zhang N, Ma H (2014) Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Nat Commun 5: 4956
-
(2014)
Nat Commun
, vol.5
, pp. 4956
-
-
Zeng, L.1
Zhang, Q.2
Sun, R.3
Kong, H.4
Zhang, N.5
Ma, H.6
-
76
-
-
84862023110
-
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
-
Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, et al (2012) Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol 30: 549-554
-
(2012)
Nat Biotechnol
, vol.30
, pp. 549-554
-
-
Zhang, G.1
Liu, X.2
Quan, Z.3
Cheng, S.4
Xu, X.5
Pan, S.6
Xie, M.7
Zeng, P.8
Yue, Z.9
Wang, W.10
-
77
-
-
78049405533
-
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors
-
Zhang M, Wu YH, Lee MK, Liu YH, Rong Y, Santos TS, Wu C, Xie F, Nelson RL, Zhang HB (2010) Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors. Nucleic Acids Res 38: 6513-6525
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6513-6525
-
-
Zhang, M.1
Wu, Y.H.2
Lee, M.K.3
Liu, Y.H.4
Rong, Y.5
Santos, T.S.6
Wu, C.7
Xie, F.8
Nelson, R.L.9
Zhang, H.B.10
-
78
-
-
79952214722
-
Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication
-
Zhang X, Feng Y, Cheng H, Tian D, Yang S, Chen JQ (2011) Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication. Mol Genet Genomics 285: 79-90
-
(2011)
Mol Genet Genomics
, vol.285
, pp. 79-90
-
-
Zhang, X.1
Feng, Y.2
Cheng, H.3
Tian, D.4
Yang, S.5
Chen, J.Q.6
-
79
-
-
84956701852
-
Uncovering the dynamic evolution of nucleotide-binding site-leucinerich repeat (NBS-LRR) genes in Brassicaceae
-
Zhang YM, Shao ZQ, Wang Q, Hang YY, Xue JY, Wang B, Chen JQ (2016) Uncovering the dynamic evolution of nucleotide-binding site-leucinerich repeat (NBS-LRR) genes in Brassicaceae. J Integr Plant Biol 58: 165-177
-
(2016)
J Integr Plant Biol
, vol.58
, pp. 165-177
-
-
Zhang, Y.M.1
Shao, Z.Q.2
Wang, Q.3
Hang, Y.Y.4
Xue, J.Y.5
Wang, B.6
Chen, J.Q.7
-
80
-
-
3042575125
-
Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes
-
Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271: 402-415
-
(2004)
Mol Genet Genomics
, vol.271
, pp. 402-415
-
-
Zhou, T.1
Wang, Y.2
Chen, J.Q.3
Araki, H.4
Jing, Z.5
Jiang, K.6
Shen, J.7
Tian, D.8
|