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Volumn 7, Issue , 2016, Pages

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

(17)  Cornejo Castillo, Francisco M a   Cabello, Ana M a   Salazar, Guillem a   Sánchez Baracaldo, Patricia b   Lima Mendez, Gipsi c,d,e   Hingamp, Pascal f   Alberti, Adriana g   Sunagawa, Shinichi h   Bork, Peer h,i   De Vargas, Colomban j,k   Raes, Jeroen c,d,e   Bowler, Chris l   Wincker, Patrick g,m,n   Zehr, Jonathan P o   Gasol, Josep M a   Massana, Ramon a   Acinas, Silvia G a  


Author keywords

[No Author keywords available]

Indexed keywords

ALGAL BLOOM; CRETACEOUS; CYANOBACTERIUM; DIVERGENCE; GENE EXPRESSION; GENOME; NITROGEN FIXATION; PHYTOPLANKTON; SPECIATION (BIOLOGY); SYMBIONT;

EID: 84961658202     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms11071     Document Type: Article
Times cited : (60)

References (55)
  • 1
    • 4243919600 scopus 로고    scopus 로고
    • Dinitrogen fixation in the world's oceans
    • Karl, D. et al. Dinitrogen fixation in the world's oceans. Biogeochemistry 57/58, 47-98 (2002).
    • (2002) Biogeochemistry , vol.57-58 , pp. 47-98
    • Karl, D.1
  • 2
    • 52049102283 scopus 로고    scopus 로고
    • Are biologists in 'future shock'? Symbiosis integrates biology across domains
    • McFall-Ngai, M. Are biologists in 'future shock'? Symbiosis integrates biology across domains. Nat. Rev. Microbiol. 6, 789-792 (2008).
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 789-792
    • McFall-Ngai, M.1
  • 3
    • 84857121184 scopus 로고    scopus 로고
    • Unveiling in situ interactions between marine protists and bacteria through single cell sequencing
    • Martinez-Garcia, M. et al. Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J. 6, 703-707 (2012).
    • (2012) ISME J. , vol.6 , pp. 703-707
    • Martinez-Garcia, M.1
  • 4
    • 84866464957 scopus 로고    scopus 로고
    • Unicellular cyanobacterium symbiotic with a singlecelled eukaryotic alga
    • Thompson, A. W. et al. Unicellular cyanobacterium symbiotic with a singlecelled eukaryotic alga. Science 337, 1546-1550 (2012).
    • (2012) Science , vol.337 , pp. 1546-1550
    • Thompson, A.W.1
  • 5
    • 4344611656 scopus 로고    scopus 로고
    • 2 fixation by unicellular diazotrophs in the oligotrophic Pacific Ocean
    • 2 fixation by unicellular diazotrophs in the oligotrophic Pacific Ocean. Nature 430, 1027-1032 (2004).
    • (2004) Nature , vol.430 , pp. 1027-1032
    • Montoya, J.P.1
  • 6
    • 77956094365 scopus 로고    scopus 로고
    • 2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
    • 2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME J. 4, 1180-1192 (2010).
    • (2010) ISME J. , vol.4 , pp. 1180-1192
    • Jardillier, L.1    Zubkov, M.V.2    Pearman, J.3    Scanlan, D.J.4
  • 7
    • 78650059540 scopus 로고    scopus 로고
    • 2 fixation in the tropical Atlantic Ocean
    • 2 fixation in the tropical Atlantic Ocean. Environ. Microbiol. 12, 3272-3289 (2010).
    • (2010) Environ. Microbiol. , vol.12 , pp. 3272-3289
    • Goebel, N.L.1
  • 8
    • 79953002220 scopus 로고    scopus 로고
    • Nitrogen cycle of the open ocean: From genes to ecosystems
    • Zehr, J. P. & Kudela, R. M. Nitrogen cycle of the open ocean: from genes to ecosystems. Ann. Rev. Mar. Sci. 3, 197-225 (2011).
    • (2011) Ann. Rev. Mar. Sci. , vol.3 , pp. 197-225
    • Zehr, J.P.1    Kudela, R.M.2
  • 9
    • 84942279721 scopus 로고    scopus 로고
    • Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis
    • Cabello, A. M. et al. Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis. ISME J. 10, 693-706 (2015).
    • (2015) ISME J. , vol.10 , pp. 693-706
    • Cabello, A.M.1
  • 10
    • 56449107383 scopus 로고    scopus 로고
    • 2-fixing cyanobacteria lack oxygenic photosystem II
    • 2-fixing cyanobacteria lack oxygenic photosystem II. Science 322, 1110-1112 (2008).
    • (2008) Science , vol.322 , pp. 1110-1112
    • Zehr, J.P.1
  • 11
    • 77950863797 scopus 로고    scopus 로고
    • Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium
    • Tripp, H. J. et al. Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium. Nature 464, 90-94 (2010).
    • (2010) Nature , vol.464 , pp. 90-94
    • Tripp, H.J.1
  • 12
    • 84920403354 scopus 로고    scopus 로고
    • Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria
    • Bombar, D. et al. Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria. ISME J. 8, 2530-2542 (2014).
    • (2014) ISME J. , vol.8 , pp. 2530-2542
    • Bombar, D.1
  • 13
    • 84891886742 scopus 로고    scopus 로고
    • Discovery of an endosymbiotic nitrogen-fixing cyanobacterium UCYN-A in Braarudosphaera bigelowii (Prymnesiophyceae)
    • Hagino, K., Onuma, R., Kawachi, M. & Horiguchi, T. Discovery of an endosymbiotic nitrogen-fixing cyanobacterium UCYN-A in Braarudosphaera bigelowii (Prymnesiophyceae). PLoS ONE 8, e81749 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e81749
    • Hagino, K.1    Onuma, R.2    Kawachi, M.3    Horiguchi, T.4
  • 14
    • 84903479886 scopus 로고    scopus 로고
    • Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host
    • Thompson, A. et al. Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host. Environ. Microbiol. 16, 3238-3249 (2014).
    • (2014) Environ. Microbiol. , vol.16 , pp. 3238-3249
    • Thompson, A.1
  • 15
    • 84877812321 scopus 로고    scopus 로고
    • 2 and C fixation rates of uncultivated cyanobacteria populations
    • 2 and C fixation rates of uncultivated cyanobacteria populations. Syst. Appl. Microbiol. 36, 259-271 (2013).
    • (2013) Syst. Appl. Microbiol. , vol.36 , pp. 259-271
    • Krupke, A.1
  • 16
    • 80051698428 scopus 로고    scopus 로고
    • Intriguing diversity among diazotrophic picoplankton along a Mediterranean transect: A dominance of rhizobia
    • Le Moal, M., Collin, H. & Biegala, I. C. Intriguing diversity among diazotrophic picoplankton along a Mediterranean transect: a dominance of rhizobia. Biogeosciences 8, 827-840 (2011).
    • (2011) Biogeosciences , vol.8 , pp. 827-840
    • Le Moal, M.1    Collin, H.2    Biegala, I.C.3
  • 17
    • 84907873701 scopus 로고    scopus 로고
    • 2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean
    • 2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean. Environ. Microbiol. 16, 3153-3167 (2014).
    • (2014) Environ. Microbiol. , vol.16 , pp. 3153-3167
    • Krupke, A.1
  • 18
    • 84932197309 scopus 로고    scopus 로고
    • The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis
    • Krupke, A. et al. The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis. ISME J. 9, 1635-1647 (2015).
    • (2015) ISME J. , vol.9 , pp. 1635-1647
    • Krupke, A.1
  • 19
    • 79953278413 scopus 로고    scopus 로고
    • Nitrogen fixation by marine cyanobacteria
    • Zehr, J. P. Nitrogen fixation by marine cyanobacteria. Trends Microbiol. 19, 162-173 (2011).
    • (2011) Trends Microbiol. , vol.19 , pp. 162-173
    • Zehr, J.P.1
  • 20
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li, W. H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36, 96-99 (1993).
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.H.1
  • 21
    • 0036720020 scopus 로고    scopus 로고
    • The Ka/Ks ratio: Diagnosing the form of sequence evolution
    • Hurst, L. D. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet. 18, 486-487 (2002).
    • (2002) Trends Genet. , vol.18 , pp. 486-487
    • Hurst, L.D.1
  • 22
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H. & Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991).
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 24
    • 0342465912 scopus 로고    scopus 로고
    • Unusual Oligocene Braarudo-sphaera-rich layers of the South Atlantic and their palaeoceanographic implications
    • Peleo-Alampay, A. M., Mead, G. A. & Wei, W. Unusual Oligocene Braarudo-sphaera-rich layers of the South Atlantic and their palaeoceanographic implications. J. Nannoplankton Res. 21, 17-26 (1999).
    • (1999) J. Nannoplankton Res. , vol.21 , pp. 17-26
    • Peleo-Alampay, A.M.1    Mead, G.A.2    Wei, W.3
  • 26
    • 77954858407 scopus 로고    scopus 로고
    • Effect of nutrient availability on marine origination rates throughout the Phanerozoic eon
    • Cardenas, A. L. & Harries, P. J. Effect of nutrient availability on marine origination rates throughout the Phanerozoic eon. Nat. Geosci. 3, 430-434 (2010).
    • (2010) Nat. Geosci. , vol.3 , pp. 430-434
    • Cardenas, A.L.1    Harries, P.J.2
  • 27
    • 84868108573 scopus 로고    scopus 로고
    • An original mode of symbiosis in open ocean plankton
    • Decelle, J. et al. An original mode of symbiosis in open ocean plankton. Proc. Natl Acad. Sci. USA 109, 18000-18005 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 18000-18005
    • Decelle, J.1
  • 28
    • 34247388789 scopus 로고    scopus 로고
    • Nitrogen fixation in eukaryotes - New models for symbiosis
    • Kneip, C., Lockhart, P., Voss, C. & Maier, U.-G. Nitrogen fixation in eukaryotes - new models for symbiosis. BMC Evol. Biol. 7, 55 (2007).
    • (2007) BMC Evol. Biol. , vol.7 , pp. 55
    • Kneip, C.1    Lockhart, P.2    Voss, C.3    Maier, U.-G.4
  • 29
    • 78650515761 scopus 로고    scopus 로고
    • Spheroid bodies in rhopalodiacean diatoms were derived from a single endosymbiotic cyanobacterium
    • Nakayama, T. et al. Spheroid bodies in rhopalodiacean diatoms were derived from a single endosymbiotic cyanobacterium. J. Plant Res. 124, 93-97 (2011).
    • (2011) J. Plant Res. , vol.124 , pp. 93-97
    • Nakayama, T.1
  • 30
    • 80055082475 scopus 로고    scopus 로고
    • A holistic approach to marine eco-systems biology
    • Karsenti, E. et al. A holistic approach to marine eco-systems biology. PLoS Biol. 9, e1001177 (2011).
    • (2011) PLoS Biol. , vol.9 , pp. e1001177
    • Karsenti, E.1
  • 31
    • 84929992013 scopus 로고    scopus 로고
    • Structure and function of the global ocean microbiome
    • Sunagawa, S. et al. Structure and function of the global ocean microbiome. Science 348, 1261359 (2015).
    • (2015) Science , vol.348 , pp. 1261359
    • Sunagawa, S.1
  • 32
    • 84906944378 scopus 로고    scopus 로고
    • Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
    • Logares, R. et al. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environ. Microbio. 16, 2659-2671 (2013).
    • (2013) Environ. Microbio. , vol.16 , pp. 2659-2671
    • Logares, R.1
  • 33
    • 84929996994 scopus 로고    scopus 로고
    • Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean
    • De Vargas, C. et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science 348, 1261605 (2015).
    • (2015) Science , vol.348 , pp. 1261605
    • De Vargas, C.1
  • 34
    • 84930214841 scopus 로고    scopus 로고
    • Open science resources for the discovery and analysis of Tara Oceans Data
    • Pesant, S. et al. Open science resources for the discovery and analysis of Tara Oceans Data. Sci. Data 2, 150023 (2015).
    • (2015) Sci. Data , vol.2 , pp. 150023
    • Pesant, S.1
  • 35
    • 84875623291 scopus 로고    scopus 로고
    • The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
    • Guillou, L. et al. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Res. 41, D597-D604 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D597-D604
    • Guillou, L.1
  • 36
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh, K., Misawa, K., Kuma, K. & Miyata, T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 3059-3066 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 37
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 38
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • Letunic, I. & Bork, P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 39
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
    • Letunic, I. & Bork, P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. W475-W478
    • Letunic, I.1    Bork, P.2
  • 40
    • 0033956590 scopus 로고    scopus 로고
    • Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization
    • Simon, N. et al. Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization. J. Eukaryot. Microbiol. 47, 76-84 (2000).
    • (2000) J. Eukaryot. Microbiol. , vol.47 , pp. 76-84
    • Simon, N.1
  • 41
    • 21244484895 scopus 로고    scopus 로고
    • Sensitive multi-color fluorescence in situ hybridization for the identification of environmental microorganisms
    • Pernthaler, A., Pernthaler, J. & Amann, R. Sensitive multi-color fluorescence in situ hybridization for the identification of environmental microorganisms. Mol. Microb. Ecol. Man. 3, 2613-2627 (2004).
    • (2004) Mol. Microb. Ecol. Man. , vol.3 , pp. 2613-2627
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 42
    • 84964314385 scopus 로고    scopus 로고
    • Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
    • Alberti, A. et al. Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data. BMC Genomics 15, 912 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 912
    • Alberti, A.1
  • 44
    • 73349098709 scopus 로고    scopus 로고
    • Timing of morphological and ecological innovations in the cyanobacteria - A key to understanding the rise in atmospheric oxygen
    • Blank, C. E. & Sánchez-Baracaldo, P. Timing of morphological and ecological innovations in the cyanobacteria - a key to understanding the rise in atmospheric oxygen. Geobiology 8, 1-23 (2010).
    • (2010) Geobiology , vol.8 , pp. 1-23
    • Blank, C.E.1    Sánchez-Baracaldo, P.2
  • 45
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 46
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot, N., Lepage, T. & Blanquart, S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25, 2286-2288 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 48
    • 84896548144 scopus 로고    scopus 로고
    • A neoproterozoic transition in the marine nitrogen cycle
    • Sánchez-Baracaldo, P., Ridgwell, A. & Raven, J. A. A neoproterozoic transition in the marine nitrogen cycle. Curr. Biol. 24, 652-657 (2014).
    • (2014) Curr. Biol. , vol.24 , pp. 652-657
    • Sánchez-Baracaldo, P.1    Ridgwell, A.2    Raven, J.A.3
  • 49
    • 37549001784 scopus 로고    scopus 로고
    • A general comparison of relaxed molecular clock models
    • Lepage, T., Bryant, D., Philippe, H. & Lartillot, N. A general comparison of relaxed molecular clock models. Mol. Biol. Evol. 24, 2669-2680 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 2669-2680
    • Lepage, T.1    Bryant, D.2    Philippe, H.3    Lartillot, N.4
  • 50
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H. & Yano, T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174 (1985).
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 51
    • 28944451210 scopus 로고    scopus 로고
    • Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
    • Yang, Z. & Rannala, B. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 23, 212-226 (2006).
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 212-226
    • Yang, Z.1    Rannala, B.2
  • 52
    • 0042626834 scopus 로고    scopus 로고
    • A reconstruction of Archean biological diversity based on molecular fossils from the 2.78 to 2.45 billion-year-old Mount Bruce Supergroup, Hamersley Basin, Western Australia
    • Brocks, J. J., Buick, R., Summons, R. E. & Logan, G. A. A reconstruction of Archean biological diversity based on molecular fossils from the 2.78 to 2.45 billion-year-old Mount Bruce Supergroup, Hamersley Basin, Western Australia. Geochim. Cosmochim. Acta 67, 4321-4335 (2003).
    • (2003) Geochim. Cosmochim. Acta , vol.67 , pp. 4321-4335
    • Brocks, J.J.1    Buick, R.2    Summons, R.E.3    Logan, G.A.4
  • 53
    • 0346457225 scopus 로고    scopus 로고
    • Dating the rise of atmospheric oxygen
    • Bekker, A. et al. Dating the rise of atmospheric oxygen. Nature 427, 117-120 (2004).
    • (2004) Nature , vol.427 , pp. 117-120
    • Bekker, A.1
  • 54
    • 33645776968 scopus 로고    scopus 로고
    • The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives
    • Tomitani, A., Knoll, A. H., Cavanaugh, C. M. & Ohno, T. The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives. Proc. Natl Acad. Sci. USA 103, 5442-5447 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 5442-5447
    • Tomitani, A.1    Knoll, A.H.2    Cavanaugh, C.M.3    Ohno, T.4
  • 55
    • 0007639710 scopus 로고
    • Endolithic microfossils (cyanophyta) from early Proterozoic stromatolites, Hebei, China
    • Zhang, Y. & Golubic, S. Endolithic microfossils (cyanophyta) from early Proterozoic stromatolites, Hebei, China. Acta Micropaleontol. Sin. 4, 1-3 (1987).
    • (1987) Acta Micropaleontol. Sin. , vol.4 , pp. 1-3
    • Zhang, Y.1    Golubic, S.2


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