Association of killer cell immunoglobulin- like receptor genes in iranian patients with rheumatoid arthritis

PLoS ONE

Volumn 10, Issue 12, 2015, Pages

  Nazari, Masoumeh ^a,b   Mahmoudi, Mahdi ^b   Rahmani, Farzaneh ^b,c   Akhlaghi, Masoomeh ^b   Beigy, Maani ^b,c   Azarian, Maryam ^b   Shamsian, Elmira ^b   Akhtari, Maryam ^b   Mansouri, Reza ^a  

^a SHAHID SADOUGHI UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b TEHRAN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^c TEHRAN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

HLA ANTIGEN CLASS 1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; HLA C ANTIGEN;

ADULT; ARTICLE; CASE CONTROL STUDY; CONTROLLED STUDY; FEMALE; GENE FREQUENCY; GENETIC ASSOCIATION; GENETIC PREDISPOSITION; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; HLA GENE; HUMAN; IRANIAN PEOPLE; KIR GENE; KIR2DL2 GENE; KIR2DL5A GENE; KIR2DL5B GENE; KIR2DS5 GENE; KIR3DS1 GENE; MAJOR CLINICAL STUDY; MALE; PSEUDOGENE; RHEUMATOID ARTHRITIS; AGED; ARTHRITIS, RHEUMATOID; DISEASE RESISTANCE; GENE EXPRESSION; GENETICS; IMMUNOLOGY; MIDDLE AGED; MOLECULAR TYPING; NATURAL KILLER CELL; PATHOLOGY; T LYMPHOCYTE;

ADULT; AGED; ARTHRITIS, RHEUMATOID; CASE-CONTROL STUDIES; DISEASE RESISTANCE; FEMALE; GENE EXPRESSION; GENETIC PREDISPOSITION TO DISEASE; HAPLOTYPES; HLA-C ANTIGENS; HUMANS; KILLER CELLS, NATURAL; MALE; MIDDLE AGED; MOLECULAR TYPING; PSEUDOGENES; RECEPTORS, KIR; T-LYMPHOCYTES;

EID: 84961303602     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0143757     Document Type: Article

References (34)

1. Moritz F, Distler O, Ospelt C, Gay RE, Gay S. Technology insight: Gene transfer and the design of novel treatments for rheumatoid arthritis. Nature clinical practice Rheumatology. 2006; 2(3):153-62. Epub 2006/08/26. doi: 10.1038/ncprheum0117 PMID: 16932675.
2. Tobon GJ, Youinou P, Saraux A. The environment, geo-epidemiology, and autoimmune disease: Rheumatoid arthritis. Autoimmunity reviews. 2010; 9(5):A288-92. Epub 2009/12/01. doi: 10.1016/j. autrev.2009.11.019 PMID: 19944780.
3. Alamanos Y, Drosos AA. Epidemiology of adult rheumatoid arthritis. Autoimmun Rev. 2005; 4(3):130-6. Epub 2005/04/13. doi: 10.1016/j.autrev.2004.09.002 PMID: 15823498.
4. Orozco G, Goh CL, Al Olama AA, Benlloch-Garcia S, Govindasami K, Guy M, et al. Common genetic variants associated with disease from genome-wide association studies are mutually exclusive in prostate cancer and rheumatoid arthritis. BJU international. 2013; 111(7):1148-55. Epub 2012/09/19. doi: 10.1111/j.1464-410X.2012.11492.x PMID: 22985493.
5. Ramirez-De los Santos S, Sanchez-Hernandez PE, Munoz-Valle JF, Palafox-Sanchez CA, Rosales-Rivera LY, Garcia-Iglesias T, et al. Associations of killer cell immunoglobulin-like receptor genes with rheumatoid arthritis. Disease markers. 2012; 33(4):201-6. Epub 2012/09/11. doi: 10.3233/dma-2012-0927 PMID: 22960345; PubMed Central PMCID: PMCPMC3810684.
6. McInnes IB, Schett G. The pathogenesis of rheumatoid arthritis. The New England journal of medicine. 2011; 365(23):2205-19. Epub 2011/12/14. doi: 10.1056/NEJMra1004965 PMID: 22150039.
7. Redelinghuys P, Whitehead L, Augello A, Drummond RA, Levesque JM, Vautier S, et al. MICL controls inflammation in rheumatoid arthritis. Annals of the rheumatic diseases. 2015. Epub 2015/08/16. doi: 10. 1136/annrheumdis-2014-206644 PMID: 26275430.
8. Shegarfi H, Naddafi F, Mirshafiey A. Natural killer cells and their role in rheumatoid arthritis: Friend or foe? TheScientificWorldJournal. 2012; 2012:491974. Epub 2012/05/02. doi: 10.1100/2012/491974 PMID: 22547986; PubMed Central PMCID: PMC3322405.
9. Gourraud PA, Meenagh A, Cambon-Thomsen A, Middleton D. Linkage disequilibrium organization of the human KIR superlocus: Implications for KIR data analyses. Immunogenetics. 2010; 62(11-12):729-40. Epub 2010/09/30. doi: 10.1007/s00251-010-0478-4 PMID: 20878401; PubMed Central PMCID: PMC2978314.
10. McGeough CM, Berrar D, Wright G, Mathews C, Gilmore P, Cunningham RT, et al. Killer immunoglobulin-like receptor and human leukocyte antigen-C genotypes in rheumatoid arthritis primary responders and non-responders to anti-TNF-alpha therapy. Rheumatology international. 2012; 32(6):1647-53. Epub 2011/03/05. doi: 10.1007/s00296-011-1838-6 PMID: 21373785; PubMed Central PMCID: PMCPMC3364412.
11. Robinson J, Halliwell JA, McWilliam H, Lopez R, Marsh SG. IPD-the Immuno Polymorphism Database. Nucleic acids research. 2013; 41(Database issue):D1234-40. Epub 2012/11/28. doi: 10.1093/nar/gks1140 PMID: 23180793; PubMed Central PMCID: PMC3531162.
12. Lanier LL. NK cell receptors. Annual review of immunology. 1998; 16:359-93. Epub 1998/05/23. doi: 10.1146/annurev.immunol.16.1.359 PMID: 9597134.
13. Ryan JC, Naper C, Hayashi S, Daws MR. Physiologic functions of activating natural killer (NK) complex-encoded receptors on NK cells. Immunological reviews. 2001; 181:126-37. Epub 2001/08/22. PMID: 11513134.
14. Martin MP, Carrington M. KIR locus polymorphisms: Genotyping and disease association analysis. Methods Mol Biol. 2008; 415:49-64. Epub 2008/03/29. doi: 10.1007/978-1-59745-570-1-3 PMID: 18370147.
15. Majorczyk E, Pawlik A, Gendosz D, Kusnierczyk P. Presence of the full-length KIR2DS4 gene reduces the chance of rheumatoid arthritis patients to respond to methotrexate treatment. BMC musculoskeletal disorders. 2014; 15:256. Epub 2014/07/30. doi: 10.1186/1471-2474-15-256 PMID: 25069714; PubMed Central PMCID: PMCPMC4118653.
16. Kogure T, Tatsumi T, Niizawa A, Fujinaga H, Ito T, Shimada Y, et al. No correlation exists between disease activity and the expression of killer-cell immunoglobulin-like receptors in patients with rheumatoid arthritis. Mediators of inflammation. 2007; 2007:65179. Epub 2007/05/15. doi: 10.1155/2007/65179 PMID: 17497034; PubMed Central PMCID: PMCPMC1804296.
17. Middleton D, Meenagh A, Wright GD. No association in frequency of KIR receptors in patients with rheumatoid arthritis from Northern Ireland. Tissue antigens. 2007; 69(6):577-82. Epub 2007/05/15. doi: 10.1111/j.1399-0039.2007.00828.x PMID: 17498267.
18. Tajik N, Shahsavar F, Mousavi T, Radjabzadeh MF. Distribution of KIR genes in the Iranian population. Tissue antigens. 2009; 74(1):22-31. Epub 2009/04/28. doi: 10.1111/j.1399-0039.2009.01263.x PMID: 19392787.
19. Tajik N, Shahsavar F, Nasiri M, Radjabzadeh MF. Compound KIR-HLA genotype analyses in the Iranian population by a novel PCR-SSP assay. International journal of immunogenetics. 2010; 37(3):159-68. Epub 2010/03/03. doi: 10.1111/j.1744-313X.2010.00906.x PMID: 20193031.
20. Aletaha D, Neogi T, Silman AJ, Funovits J, Felson DT, Bingham CO 3rd, et al. 2010 Rheumatoid arthritis classification criteria: An American College of Rheumatology/European League Against Rheumatism collaborative initiative. Arthritis and rheumatism. 2010; 62(9):2569-81. Epub 2010/09/28. doi: 10. 1002/art.27584 PMID: 20872595.
21. Roe BA, Crabtree J, Khan A. Methods for DNA isolation. Part III. Protocols for recombinant DNA isolation, cloning, and sequencing [Internet edition] Norman, OK: University of Oklahoma. 1995:2488-98.
22. Gagne K, Brizard G, Gueglio B, Milpied N, Herry P, Bonneville F, et al. Relevance of KIR gene polymorphisms in bone marrow transplantation outcome. Human immunology. 2002; 63(4):271-80. Epub 2002/06/01. PMID: 12039408.
23. Vilches C, Castano J, Gomez-Lozano N, Estefania E. Facilitation of KIR genotyping by a PCR-SSP method that amplifies short DNA fragments. Tissue antigens. 2007; 70(5):415-22. Epub 2007/09/15. doi: 10.1111/j.1399-0039.2007.00923.x PMID: 17854430.
24. Kulkarni S, Martin MP, Carrington M. The Yin and Yang of HLA and KIR in human disease. Seminars in immunology. 2008; 20(6):343-52. Epub 2008/07/19. doi: 10.1016/j.smim.2008.06.003 PMID: 18635379; PubMed Central PMCID: PMC3501819.
25. Benjamini Y, Hochberg Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B (Methodological). 1995:289-300.
26. Rajagopalan S, Long EO. Understanding how combinations of HLA and KIR genes influence disease. The Journal of experimental medicine. 2005; 201(7):1025-9. Epub 2005/04/06. doi: 10.1084/jem. 20050499 PMID: 15809348; PubMed Central PMCID: PMC2213130.
27. Yen JH, Lin CH, Tsai WC, Wu CC, Ou TT, Hu CJ, et al. Killer cell immunoglobulin-like receptor gene's repertoire in rheumatoid arthritis. Scandinavian journal of rheumatology. 2006; 35(2):124-7. Epub 2006/04/28. doi: 10.1080/03009740500381252 PMID: 16641046.
28. Yen JH, Moore BE, Nakajima T, Scholl D, Schaid DJ, Weyand CM, et al. Major histocompatibility complex class I-recognizing receptors are disease risk genes in rheumatoid arthritis. The Journal of experimental medicine. 2001; 193(10):1159-67. Epub 2001/05/23. PMID: 11369787; PubMed Central PMCID: PMCPMC2193323.
29. Majorczyk E, Pawlik A, Luszczek W, Nowak I, Wisniewski A, Jasek M, et al. Associations of killer cell immunoglobulin-like receptor genes with complications of rheumatoid arthritis. Genes and immunity. 2007; 8(8):678-83. Epub 2007/09/21. doi: 10.1038/sj.gene.6364433 PMID: 17882223.
30. Gras Navarro A, Kmiecik J, Leiss L, Zelkowski M, Engelsen A, Bruserud O, et al. NK cells with KIR2DS2 immunogenotype have a functional activation advantage to efficiently kill glioblastoma and prolong animal survival. Journal of immunology (Baltimore, Md: 1950). 2014; 193(12):6192-206. Epub 2014/11/09. doi: 10.4049/jimmunol.1400859 PMID: 25381437; PubMed Central PMCID: PMCPMC4259203.
31. Ayo CM, Reis PG, Dalalio MM, Visentainer JE, Oliveira Cde F, De Araujo SM, et al. Killer Cell Immunoglobulin-like Receptors and Their HLA Ligands are Related with the Immunopathology of Chagas Disease. PLoS neglected tropical diseases. 2015; 9(5):e0003753. Epub 2015/05/16. doi: 10.1371/journal. pntd.0003753 PMID: 25978047; PubMed Central PMCID: PMCPMC4433128.
32. Carrington M, Norman P, Carrington M, Norman P. The KIR gene cluster. 2003.
33. Roberts CH, Jiang W, Jayaraman J, Trowsdale J, Holland MJ, Traherne JA. Killer-cell Immunoglobulinlike Receptor gene linkage and copy number variation analysis by droplet digital PCR. Genome medicine. 2014; 6(3):20. Epub 2014/03/07. doi: 10.1186/gm537 PMID: 24597950; PubMed Central PMCID: PMCPMC4062048.
34. Diaz-Pena R, Vidal-Castineira JR, Alonso-Arias R, Suarez-Alvarez B, Vicario JL, Solana R, et al. Association of the KIR3DS1∗013 and KIR3DL1∗004 alleles with susceptibility to ankylosing spondylitis. Arthritis and rheumatism. 2010; 62(4):1000-6. Epub 2010/02/05. doi: 10.1002/art.27332 PMID: 20131260.