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Volumn 62, Issue 11-12, 2010, Pages 729-740

Linkage disequilibrium organization of the human KIR superlocus: Implications for KIR data analyses

Author keywords

Association studies; KIR; Linkage disequilibrium; Tagging

Indexed keywords

KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR;

EID: 78649352001     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-010-0478-4     Document Type: Article
Times cited : (52)

References (36)
  • 1
    • 0034017850 scopus 로고    scopus 로고
    • GOLD-graphical overview of linkage disequilibrium
    • 10.1093/bioinformatics/16.2.182 10842743 1:CAS:528:DC%2BD3cXktVyitrY%3D
    • GR Abecasis WO Cookson 2000 GOLD-graphical overview of linkage disequilibrium Bioinformatics 16 182 183 10.1093/bioinformatics/16.2.182 10842743 1:CAS:528:DC%2BD3cXktVyitrY%3D
    • (2000) Bioinformatics , vol.16 , pp. 182-183
    • Abecasis, G.R.1    Cookson, W.O.2
  • 2
    • 0026498615 scopus 로고
    • Conserved, extended MHC haplotypes
    • 1489551 1:STN:280:DyaK3s7ktl2lsQ%3D%3D
    • CA Alper Z Awdeh EJ Yunis 1992 Conserved, extended MHC haplotypes Exp Clin Immunogenet 9 58 71 1489551 1:STN:280:DyaK3s7ktl2lsQ%3D%3D
    • (1992) Exp Clin Immunogenet , vol.9 , pp. 58-71
    • Alper, C.A.1    Awdeh, Z.2    Yunis, E.J.3
  • 3
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • DOI 10.1093/bioinformatics/bth457
    • JC Barrett B Fry J Maller MJ Daly 2005 Haploview: analysis and visualization of LD and haplotype maps Bioinformatics 21 263 265 10.1093/bioinformatics/bth457 15297300 1:CAS:528:DC%2BD2MXkt1WitQ%3D%3D (Pubitemid 40202029)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 4
    • 33750356775 scopus 로고    scopus 로고
    • The killer immunoglobulin-like receptor gene cluster: Tuning the genome for defense
    • DOI 10.1146/annurev.genom.7.080505.115726
    • AA Bashirova MP Martin DW McVicar M Carrington 2006 The killer immunoglobulin-like receptor gene cluster: tuning the genome for defense Annu Rev Genomics Hum Genet 7 277 300 10.1146/annurev.genom.7.080505.115726 16824023 1:CAS:528:DC%2BD28Xht1Wgsr3I (Pubitemid 44627931)
    • (2006) Annual Review of Genomics and Human Genetics , vol.7 , pp. 277-300
    • Bashirova, A.A.1    Martin, M.P.2    McVicar, D.W.3    Carrington, M.4
  • 5
    • 20844455366 scopus 로고    scopus 로고
    • The impact of variation at the KIR gene cluster on human disease
    • 10.1007/3-540-27743-9-12 16329188 1:CAS:528:DC%2BD28XhtFyrs7Y%3D
    • M Carrington MP Martin 2006 The impact of variation at the KIR gene cluster on human disease Curr Top Microbiol Immunol 298 225 257 10.1007/3-540-27743-9-12 16329188 1:CAS:528:DC%2BD28XhtFyrs7Y%3D
    • (2006) Curr Top Microbiol Immunol , vol.298 , pp. 225-257
    • Carrington, M.1    Martin, M.P.2
  • 6
    • 84991145247 scopus 로고
    • Disease associations with complotypes, supratypes and haplotypes
    • 10.1111/j.1600-065X.1983.tb00707.x 6832798 1:STN:280:DyaL3s7lvFClug%3D%3D
    • RL Dawkins FT Christiansen PH Kay M Garlepp J McCluskey PN Hollingsworth PJ Zilko 1983 Disease associations with complotypes, supratypes and haplotypes Immunol Rev 70 1 22 10.1111/j.1600-065X.1983.tb00707.x 6832798 1:STN:280:DyaL3s7lvFClug%3D%3D
    • (1983) Immunol Rev , vol.70 , pp. 1-22
    • Dawkins, R.L.1    Christiansen, F.T.2    Kay, P.H.3    Garlepp, M.4    McCluskey, J.5    Hollingsworth, P.N.6    Zilko, P.J.7
  • 7
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): An integrated software package for population genetics data analysis
    • 19325852 1:CAS:528:DC%2BD28XjsFSltg%3D%3D
    • L Excoffier G Laval S Schneider 2005 Arlequin (version 3.0): an integrated software package for population genetics data analysis Evol Bioinform Online 1 47 50 19325852 1:CAS:528:DC%2BD28XjsFSltg%3D%3D
    • (2005) Evol Bioinform Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 9
    • 34247178682 scopus 로고    scopus 로고
    • Preliminary analysis of a KIR haplotype estimation algorithm: A simulation study
    • 10.1111/j.1399-0039.2006.762-4.x 17445177
    • PA Gourraud K Gagne JD Bignon A Cambon-Thomsen D Middleton 2007 Preliminary analysis of a KIR haplotype estimation algorithm: a simulation study Tissue Antigens 69 Suppl 1 96 100 10.1111/j.1399-0039.2006.762-4.x 17445177
    • (2007) Tissue Antigens , vol.69 , Issue.SUPPL. 1 , pp. 96-100
    • Gourraud, P.A.1    Gagne, K.2    Bignon, J.D.3    Cambon-Thomsen, A.4    Middleton, D.5
  • 10
    • 78649372913 scopus 로고    scopus 로고
    • Linkage disequilibrium patterns in the KIR cluster: Several point of view on the same non independent association of KIR genes polymorphisms
    • PA Gourraud A Meenagh A Cambon-Thomsen D Middleton 2008 Linkage disequilibrium patterns in the KIR cluster: several point of view on the same non independent association of KIR genes polymorphisms Tissue Antigens 72 299
    • (2008) Tissue Antigens , vol.72 , pp. 299
    • Gourraud, P.A.1    Meenagh, A.2    Cambon-Thomsen, A.3    Middleton, D.4
  • 11
    • 39649106908 scopus 로고    scopus 로고
    • On transferability of genome-wide tagSNPs
    • DOI 10.1002/gepi.20269
    • CC Gu K Yu S Ketkar AR Templeton DC Rao 2008 On transferability of genome-wide tagSNPs Genet Epidemiol 32 89 97 10.1002/gepi.20269 17896344 (Pubitemid 351288026)
    • (2008) Genetic Epidemiology , vol.32 , Issue.2 , pp. 89-97
    • Gu, C.C.1    Yu, K.2    Ketkar, S.3    Templeton, A.R.4    Rao, D.C.5
  • 12
    • 44249095888 scopus 로고    scopus 로고
    • Association of maternal killer-cell immunoglobulin-like receptors and parental HLA-C genotypes with recurrent miscarriage
    • 10.1093/humrep/den011 18263639 1:CAS:528:DC%2BD1cXmslKktb8%3D
    • SE Hiby L Regan W Lo L Farrell M Carrington A Moffett 2008 Association of maternal killer-cell immunoglobulin-like receptors and parental HLA-C genotypes with recurrent miscarriage Hum Reprod 23 972 976 10.1093/humrep/den011 18263639 1:CAS:528:DC%2BD1cXmslKktb8%3D
    • (2008) Hum Reprod , vol.23 , pp. 972-976
    • Hiby, S.E.1    Regan, L.2    Lo, W.3    Farrell, L.4    Carrington, M.5    Moffett, A.6
  • 13
    • 0036945657 scopus 로고    scopus 로고
    • The killer cell immunoglobulin-like receptor (KIR) genomic region: Gene-order, haplotypes and allelic polymorphism
    • DOI 10.1034/j.1600-065X.2002.19004.x
    • KC Hsu S Chida DE Geraghty B Dupont 2002 The killer cell immunoglobulin-like receptor (KIR) genomic region: gene-order, haplotypes and allelic polymorphism Immunol Rev 190 40 52 10.1034/j.1600-065X.2002.19004.x 12493005 1:CAS:528:DC%2BD3sXnt12luw%3D%3D (Pubitemid 36071925)
    • (2002) Immunological Reviews , vol.190 , pp. 40-52
    • Hsu, K.C.1    Chida, S.2    Geraghty, D.E.3    Dupont, B.4
  • 16
    • 63249111188 scopus 로고    scopus 로고
    • Association of killer cell immunoglobulin-like receptors with primary Sjogren's syndrome
    • 10.1093/rheumatology/ken503 1:CAS:528:DC%2BD1MXjsFersrY%3D
    • DP Lowe MA Cook SJ Bowman DC Briggs 2009 Association of killer cell immunoglobulin-like receptors with primary Sjogren's syndrome Rheumatology (Oxford) 48 359 362 10.1093/rheumatology/ken503 1:CAS:528:DC%2BD1MXjsFersrY%3D
    • (2009) Rheumatology (Oxford) , vol.48 , pp. 359-362
    • Lowe, D.P.1    Cook, M.A.2    Bowman, S.J.3    Briggs, D.C.4
  • 17
    • 4043108432 scopus 로고    scopus 로고
    • Gene for the activating natural killer cell receptor, KIR2DS1, is associated with susceptibility to psoriasis vulgaris
    • DOI 10.1016/j.humimm.2004.05.008, PII S0198885904001247
    • W Luszczek M Manczak M Cislo P Nockowski A Wisniewski M Jasek P Kusnierczyk 2004 Gene for the activating natural killer cell receptor, KIR2DS1, is associated with susceptibility to psoriasis vulgaris Hum Immunol 65 758 766 10.1016/j.humimm.2004.05.008 15310528 1:CAS:528:DC%2BD2cXmsVGjtbo%3D (Pubitemid 39061175)
    • (2004) Human Immunology , vol.65 , Issue.7 , pp. 758-766
    • Luszczek, W.1    Manczak, M.2    Cislo, M.3    Nockowski, P.4    Wisniewski, A.5    Jasek, M.6    Kusnierczyk, P.7
  • 19
    • 57749198434 scopus 로고    scopus 로고
    • KIR haplotypes defined by segregation analysis in 59 Centre d'Etude Polymorphisme Humain (CEPH) families
    • 10.1007/s00251-008-0334-y 18972110 1:CAS:528:DC%2BD1cXhsVWhsrnN
    • MP Martin RM Single MJ Wilson J Trowsdale M Carrington 2008 KIR haplotypes defined by segregation analysis in 59 Centre d'Etude Polymorphisme Humain (CEPH) families Immunogenetics 60 767 774 10.1007/s00251-008-0334-y 18972110 1:CAS:528:DC%2BD1cXhsVWhsrnN
    • (2008) Immunogenetics , vol.60 , pp. 767-774
    • Martin, M.P.1    Single, R.M.2    Wilson, M.J.3    Trowsdale, J.4    Carrington, M.5
  • 20
    • 71649088064 scopus 로고    scopus 로고
    • The extensive polymorphism of KIR genes
    • 10.1111/j.1365-2567.2009.03208.x 20028428 1:CAS:528:DC%2BC3cXnsVKm
    • D Middleton F Gonzelez 2010 The extensive polymorphism of KIR genes Immunology 129 8 19 10.1111/j.1365-2567.2009.03208.x 20028428 1:CAS:528:DC%2BC3cXnsVKm
    • (2010) Immunology , vol.129 , pp. 8-19
    • Middleton, D.1    Gonzelez, F.2
  • 21
    • 33846350231 scopus 로고    scopus 로고
    • KIR haplotype content at the allele level in 77 Northern Irish families
    • DOI 10.1007/s00251-006-0181-7
    • D Middleton A Meenagh PA Gourraud 2007 KIR haplotype content at the allele level in 77 Northern Irish families Immunogenetics 59 145 158 10.1007/s00251-006-0181-7 17200871 1:STN:280:DC%2BD2s%2FjtVWrsg%3D%3D (Pubitemid 46130793)
    • (2007) Immunogenetics , vol.59 , Issue.2 , pp. 145-158
    • Middleton, D.1    Meenagh, A.2    Gourraud, P.A.3
  • 22
    • 65649086742 scopus 로고    scopus 로고
    • Killer immunoglobulin-like receptors (KIR2DL2 and/or KIR2DS2) in presence of their ligand (HLA-C1 group) protect against chronic myeloid leukaemia
    • 10.1111/j.1399-0039.2009.01235.x 19493232 1:CAS:528:DC%2BD1MXmvVWisLs%3D
    • D Middleton AS Diler A Meenagh C Sleator PA Gourraud 2009 Killer immunoglobulin-like receptors (KIR2DL2 and/or KIR2DS2) in presence of their ligand (HLA-C1 group) protect against chronic myeloid leukaemia Tissue Antigens 73 553 560 10.1111/j.1399-0039.2009.01235.x 19493232 1:CAS:528: DC%2BD1MXmvVWisLs%3D
    • (2009) Tissue Antigens , vol.73 , pp. 553-560
    • Middleton, D.1    Diler, A.S.2    Meenagh, A.3    Sleator, C.4    Gourraud, P.A.5
  • 25
    • 48349127046 scopus 로고    scopus 로고
    • Duplication, mutation and recombination of the human orphan gene KIR2DS3 contribute to the diversity of KIR haplotypes
    • 10.1038/gene.2008.34 18480828 1:CAS:528:DC%2BD1cXovVCmsr0%3D
    • D Ordonez A Meenagh N Gomez-Lozano J Castano D Middleton C Vilches 2008 Duplication, mutation and recombination of the human orphan gene KIR2DS3 contribute to the diversity of KIR haplotypes Genes Immun 9 431 437 10.1038/gene.2008.34 18480828 1:CAS:528:DC%2BD1cXovVCmsr0%3D
    • (2008) Genes Immun , vol.9 , pp. 431-437
    • Ordonez, D.1    Meenagh, A.2    Gomez-Lozano, N.3    Castano, J.4    Middleton, D.5    Vilches, C.6
  • 26
    • 0345735835 scopus 로고    scopus 로고
    • The protein made from a common allele of KIR3DL1 (3DL1*004) is poorly expressed at cell surfaces due to substitution at positions 86 in Ig domain 0 and 182 in Ig domain 1
    • Pando MJ, Gardiner CM, Gleimer M, McQueen KL, Parham P (2003) The protein made from a common allele of KIR3DL1 (3DL1*004) is poorly expressed at cell surfaces due to substitution at positions 86 in Ig domain 0 and 182 in Ig domain 1. J Immunol 171:6640-6649
    • (2003) J Immunol , vol.171 , pp. 6640-6649
    • Pando, M.J.1    Gardiner, C.M.2    Gleimer, M.3    McQueen, K.L.4    Parham, P.5
  • 27
    • 20344393414 scopus 로고    scopus 로고
    • Influence of KIR diversity on human immunity
    • 10.1007/0-387-24180-9-6 15932019 1:CAS:528:DC%2BD2MXhtlCjsL3O
    • P Parham 2005 Influence of KIR diversity on human immunity Adv Exp Med Biol 560 47 50 10.1007/0-387-24180-9-6 15932019 1:CAS:528:DC%2BD2MXhtlCjsL3O
    • (2005) Adv Exp Med Biol , vol.560 , pp. 47-50
    • Parham, P.1
  • 28
    • 33745627440 scopus 로고    scopus 로고
    • A Role for KIR Gene Variants Other Than KIR2DS1 in Conferring Susceptibility to Psoriasis
    • DOI 10.1016/j.humimm.2006.04.001, PII S0198885906000875
    • R Ploski W Luszczek P Kusnierczyk P Nockowski M Cislo P Krajewski J Malejczyk 2006 A role for KIR gene variants other than KIR2DS1 in conferring susceptibility to psoriasis Hum Immunol 67 521 526 10.1016/j.humimm.2006.04.001 16829306 1:CAS:528:DC%2BD28XmslChsrg%3D (Pubitemid 43994244)
    • (2006) Human Immunology , vol.67 , Issue.7 , pp. 521-526
    • Ploski, R.1    Luszczek, W.2    Kusnierczyk, P.3    Nockowski, P.4    Cislo, M.5    Krajewski, P.6    Malejczyk, J.7
  • 29
    • 0036498793 scopus 로고    scopus 로고
    • Allelic polymorphism synergizes with variable gene content to individualize human KIR genotype
    • 11859120 1:CAS:528:DC%2BD38XhvVegs7w%3D
    • HG Shilling LA Guethlein NW Cheng CM Gardiner R Rodriguez D Tyan P Parham 2002 Allelic polymorphism synergizes with variable gene content to individualize human KIR genotype J Immunol 168 2307 2315 11859120 1:CAS:528:DC%2BD38XhvVegs7w%3D
    • (2002) J Immunol , vol.168 , pp. 2307-2315
    • Shilling, H.G.1    Guethlein, L.A.2    Cheng, N.W.3    Gardiner, C.M.4    Rodriguez, R.5    Tyan, D.6    Parham, P.7
  • 30
    • 61449529327 scopus 로고    scopus 로고
    • Methods for assessing gene content diversity of KIR with examples from a global set of populations
    • 10.1007/s00251-008-0331-1 18797862 1:CAS:528:DC%2BD1cXhsVWhsrnP
    • RM Single MP Martin D Meyer X Gao M Carrington 2008 Methods for assessing gene content diversity of KIR with examples from a global set of populations Immunogenetics 60 711 725 10.1007/s00251-008-0331-1 18797862 1:CAS:528:DC%2BD1cXhsVWhsrnP
    • (2008) Immunogenetics , vol.60 , pp. 711-725
    • Single, R.M.1    Martin, M.P.2    Meyer, D.3    Gao, X.4    Carrington, M.5
  • 31
    • 2442532567 scopus 로고    scopus 로고
    • Genetic polymorphisms of killer cell immunoglobulin-like receptors are associated with susceptibility to psoriasis vulgaris
    • DOI 10.1111/j.0022-202X.2004.22517.x
    • Y Suzuki Y Hamamoto Y Ogasawara K Ishikawa Y Yoshikawa T Sasazuki M Muto 2004 Genetic polymorphisms of killer cell immunoglobulin-like receptors are associated with susceptibility to psoriasis vulgaris J Invest Dermatol 122 1133 1136 10.1111/j.0022-202X.2004.22517.x 15140215 1:CAS:528:DC%2BD2cXkvVOrtbg%3D (Pubitemid 38651087)
    • (2004) Journal of Investigative Dermatology , vol.122 , Issue.5 , pp. 1133-1136
    • Suzuki, Y.1    Hamamoto, Y.2    Ogasawara, Y.3    Ishikawa, K.4    Yoshikawa, Y.5    Sasazuki, T.6    Muto, M.7
  • 33
    • 50549099901 scopus 로고    scopus 로고
    • Role of KIRs and KIR ligands in hematopoietic transplantation
    • 10.1016/j.coi.2008.07.004 18675345 1:CAS:528:DC%2BD1cXhtVylur7M
    • A Velardi 2008 Role of KIRs and KIR ligands in hematopoietic transplantation Curr Opin Immunol 20 581 587 10.1016/j.coi.2008.07.004 18675345 1:CAS:528:DC%2BD1cXhtVylur7M
    • (2008) Curr Opin Immunol , vol.20 , pp. 581-587
    • Velardi, A.1
  • 34
    • 39149143029 scopus 로고    scopus 로고
    • NK cell receptors and their ligands in leukemia
    • DOI 10.1038/sj.leu.2405040, PII 2405040
    • S Verheyden C Demanet 2008 NK cell receptors and their ligands in leukemia Leukemia 22 249 257 10.1038/sj.leu.2405040 18046448 1:CAS:528:DC%2BD1cXhvVyltLo%3D (Pubitemid 351250528)
    • (2008) Leukemia , vol.22 , Issue.2 , pp. 249-257
    • Verheyden, S.1    Demanet, C.2
  • 35
    • 13444251244 scopus 로고    scopus 로고
    • Haplotype analysis of killer cell immunoglobulin-like receptor genes in 77 Korean families
    • DOI 10.1016/j.humimm.2004.10.013
    • DH Whang H Park JA Yoon MH Park 2005 Haplotype analysis of killer cell immunoglobulin-like receptor genes in 77 Korean families Hum Immunol 66 146 154 10.1016/j.humimm.2004.10.013 15695000 1:CAS:528:DC%2BD2MXhtV2nur4%3D (Pubitemid 40208202)
    • (2005) Human Immunology , vol.66 , Issue.2 , pp. 146-154
    • Whang, D.H.1    Park, H.2    Yoon, J.A.3    Park, M.H.4
  • 36
    • 34548757361 scopus 로고    scopus 로고
    • Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns
    • DOI 10.1093/bioinformatics/btm371
    • YJ Yoo J Tang RA Kaslow K Zhang 2007 Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns Bioinformatics 23 2399 2406 10.1093/bioinformatics/btm371 17644820 1:CAS:528:DC%2BD2sXhtVOku77N (Pubitemid 47423837)
    • (2007) Bioinformatics , vol.23 , Issue.18 , pp. 2399-2406
    • Yoo, Y.J.1    Tang, J.2    Kaslow, R.A.3    Zhang, K.4


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