Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs

Virus Genes

Volumn 52, Issue 4, 2016, Pages 564-567

  Palinski, Rachel M ^a   Mitra, Namita ^b   Hause, Ben M ^a,b  

^a Kansas State Department of Diagnostic Medicine and Pathobiology   (United States)

^b Kansas State Veterinary Diagnostic Laboratory   (United States)

Author keywords

Fecal; Metagenomic sequencing; Parvoviridae; Parvovirus; Swine

Indexed keywords

AMINO ACID; NONSTRUCTURAL PROTEIN 1; VIRUS PROTEIN;

ADULT; ANIMAL TISSUE; ARTICLE; BAT; DNA VIRUS; GENE SEQUENCE; GENUS; METAGENOMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARVOVIRUS 2; PARVOVIRUS TP1 2012 HUN; PHYLOGENY; PIG; POLYMERASE CHAIN REACTION; PORCINE PARVOVIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; QUANTITATIVE ANALYSIS; RECTAL SWAB; SEQUENCE HOMOLOGY; SMEAR; TURKEY (BIRD); VIRAL GENETICS; VIRUS IDENTIFICATION; ANIMAL; DNA SEQUENCE; GENETICS; PARVOVIRUS INFECTION; PROCEDURES; SWINE DISEASE; VIROLOGY; VIRUS GENOME;

ANIMALS; GENOME, VIRAL; METAGENOMICS; PARVOVIRIDAE INFECTIONS; PARVOVIRUS, PORCINE; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

EID: 84961206527     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-016-1322-1     Document Type: Article

References (19)

1. S.F. Cotmore, M. Agbandje-McKenna, J.A. Chiorini, D.V. Mukha, D.J. Pintel, J. Qiu, M. Soderlund-Venermo, P. Tattersall, P. Tijssen, D. Gatherer, A.J. Davison, Arch. Virol. 159, 1239 (2014)
2. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz, Virus Taxonomy (Elsevier, San Diego, 2012), pp. 405–425
3. T.G. Phan, F. Gulland, C. Simeone, X. Deng, E. Delwart, Virus Genes 50, 134 (2014)
4. E.E. Schirtzinger, A.W. Suddith, B.M. Hause, R.A. Hesse, Virol. J. 12, 170 (2015)
5. J. Ni, C. Qiao, X. Han, T. Han, W. Kang, Z. Zi, Z. Cao, X. Zhai, X. Cai, Virol. J. 11, 1 (2014)
6. A.K. Cheung, G. Wu, D. Wang, D.O. Bayles, K.M. Lager, A.L. Vincent, Arch. Virol. 155, 801 (2010)
7. C.-T. Xiao, P.G. Halbur, T. Opriessnig, Genome Announc. (2013). doi:10.1128/genomeA.00021-12
8. B.M. Hause, E.A. Collin, J. Anderson, R.A. Hesse, G. Anderson, PLoS ONE 10, e0121998 (2015)
9. J.D. Neill, D.O. Bayles, J.F. Ridpath, J. Virol. Methods 201, 68 (2014)
10. K. Tamura, G. Stecher, D. Peterson, A. Filipski, S. Kumar, Mol. Biol. Evol. 30, 2725 (2013)
11. K.S. Baker, R.M. Leggett, N.H. Bexfield, M. Alston, G. Daly, S. Todd, M. Tachedjian, C.E.G. Holmes, S. Crameri, L.-F. Wang, J.L. Heeney, R. Suu-Ire, P. Kellam, A.A. Cunningham, J.L.N. Wood, M. Caccamo, P.R. Murcia, Virology 441, 95 (2013)
12. G. Reuter, Á. Boros, E. Delwart, P. Pankovics, Arch. Virol. 159, 2161 (2014)
13. T. Opriessnig, C.-T. Xiao, P.F. Gerber, P.G. Halbur, Vet. Microbiol. 173, 9 (2014)
14. T. Opriessnig, K. O’Neill, P.F. Gerber, A.M.M.G. de Castro, L.G. Gimenéz-Lirola, N.M. Beach, L. Zhou, X.-J. Meng, C. Wang, P.G. Halbur, Vaccine 31, 487 (2013)
15. M. Hijikata, K. Abe, K.M. Win, Y.K. Shimizu, N. Keicho, H. Yoshikura, Jpn. J. Infect. Dis. 54, 244 (2001)
16. F. Wang, Y. Wei, C. Zhu, X. Huang, Y. Xu, L. Yu, X. Yu, Virus Genes 41, 305 (2010)
17. I. Tischer, R. Rasch, and G. Tochtermann, Zentralblatt Für Bakteriol. Parasitenkd. Infekt. Hyg. Erste Abt. Orig. Reihe Med. Mikrobiol. Parasitol. 226, 153 (1974)
18. I. Tischer, H. Gelderblom, W. Vettermann, M.A. Koch, Nature 295, 64 (1982)
19. D. Saha, D.J. Lefebvre, R. Ducatelle, J.V. Doorsselaere, H.J. Nauwynck, BMC Vet. Res. 7, 64 (2011)