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Volumn 441, Issue 2, 2013, Pages 95-106

Metagenomic study of the viruses of African straw-coloured fruit bats: Detection of a chiropteran poxvirus and isolation of a novel adenovirus

Author keywords

Adenovirus; Bat; Megabat; Metagenomics; Poxvirus; Viral emergence; Virome

Indexed keywords

CONTIG;

EID: 84877923951     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2013.03.014     Document Type: Article
Times cited : (122)

References (53)
  • 1
    • 0035949592 scopus 로고    scopus 로고
    • A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species
    • Allander T., Emerson S.U., Engle R.E., Purcell R.H., Bukh J. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. PNAS 2001, 98:11609-11614.
    • (2001) PNAS , vol.98 , pp. 11609-11614
    • Allander, T.1    Emerson, S.U.2    Engle, R.E.3    Purcell, R.H.4    Bukh, J.5
  • 3
    • 0347185345 scopus 로고    scopus 로고
    • The role of evolution in the emergence of infectious diseases
    • Antia R., Regoes R.R., Koella J.C., Bergstrom C.T. The role of evolution in the emergence of infectious diseases. Nature 2003, 426:658-661.
    • (2003) Nature , vol.426 , pp. 658-661
    • Antia, R.1    Regoes, R.R.2    Koella, J.C.3    Bergstrom, C.T.4
  • 6
    • 50949127759 scopus 로고    scopus 로고
    • Novel astroviruses in insectivorous bats
    • Chu D.K., Poon L.L., Guan Y., Peiris J.S. Novel astroviruses in insectivorous bats. J. Virol. 2008, 82:9107-9114.
    • (2008) J. Virol. , vol.82 , pp. 9107-9114
    • Chu, D.K.1    Poon, L.L.2    Guan, Y.3    Peiris, J.S.4
  • 7
    • 34748829764 scopus 로고    scopus 로고
    • Overviews of pathogen emergence: which pathogens emerge, when and why?
    • Cleaveland S., Haydon D.T., Taylor L. Overviews of pathogen emergence: which pathogens emerge, when and why?. Curr. Top. Microbiol. Immunol. 2007, 315:85-111.
    • (2007) Curr. Top. Microbiol. Immunol. , vol.315 , pp. 85-111
    • Cleaveland, S.1    Haydon, D.T.2    Taylor, L.3
  • 12
    • 78649394198 scopus 로고    scopus 로고
    • Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat
    • Donaldson E.F., Haskew A.N., Gates J.E., Huynh J., Moore C.J., Frieman M.B. Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat. J. Virol. 2010, 84:13004-13018.
    • (2010) J. Virol. , vol.84 , pp. 13004-13018
    • Donaldson, E.F.1    Haskew, A.N.2    Gates, J.E.3    Huynh, J.4    Moore, C.J.5    Frieman, M.B.6
  • 15
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 84861397655 scopus 로고    scopus 로고
    • Metagenomic analysis of viruses from bat fecal samples reveals many novel viruses in insectivorous bats in China
    • Ge X., Li Y., Yang X., Zhang H., Zhou P., Zhang Y., Shi Z. Metagenomic analysis of viruses from bat fecal samples reveals many novel viruses in insectivorous bats in China. J. Virol. 2012, 86:4620-4630.
    • (2012) J. Virol. , vol.86 , pp. 4620-4630
    • Ge, X.1    Li, Y.2    Yang, X.3    Zhang, H.4    Zhou, P.5    Zhang, Y.6    Shi, Z.7
  • 18
    • 0033871684 scopus 로고    scopus 로고
    • Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus
    • Halpin K., Young P.L., Field H.E., MacKenzie J.S. Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. J. Gen. Virol. 2000, 81:1927-1932.
    • (2000) J. Gen. Virol. , vol.81 , pp. 1927-1932
    • Halpin, K.1    Young, P.L.2    Field, H.E.3    MacKenzie, J.S.4
  • 23
    • 84856246802 scopus 로고    scopus 로고
    • De novo assembly and genotyping of variants using colored de Bruijn graphs
    • Iqbal Z., Caccamo M., Turner I., Flicek P., McVean G. De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat. Genet. 2012, 44:226-232.
    • (2012) Nat. Genet. , vol.44 , pp. 226-232
    • Iqbal, Z.1    Caccamo, M.2    Turner, I.3    Flicek, P.4    McVean, G.5
  • 25
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 2002, 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 29
    • 77953786835 scopus 로고    scopus 로고
    • Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses
    • Li L., Victoria J.G., Wang C., Jones M., Fellers G.M., Kunz T.H., Delwart E. Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J. Virol. 2010, 84:6955-6965.
    • (2010) J. Virol. , vol.84 , pp. 6955-6965
    • Li, L.1    Victoria, J.G.2    Wang, C.3    Jones, M.4    Fellers, G.M.5    Kunz, T.H.6    Delwart, E.7
  • 35
    • 3142654211 scopus 로고    scopus 로고
    • The challenge of emerging and re-emerging infectious diseases
    • Morens D.M., Folkers G.K., Fauci A.S. The challenge of emerging and re-emerging infectious diseases. Nature 2004, 430:242-249.
    • (2004) Nature , vol.430 , pp. 242-249
    • Morens, D.M.1    Folkers, G.K.2    Fauci, A.S.3
  • 37
    • 79959422558 scopus 로고    scopus 로고
    • Meta-IDBA: a de Novo assembler for metagenomic data
    • Peng Y., Leung H.C., Yiu S.M., Chin F.Y. Meta-IDBA: a de Novo assembler for metagenomic data. Bioinformatics 2011, 27:i94-101.
    • (2011) Bioinformatics , vol.27
    • Peng, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 39
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 40
    • 84859711250 scopus 로고    scopus 로고
    • Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing
    • Sachsenroder J., Twardziok S., Hammerl J.A., Janczyk P., Wrede P., Hertwig S., Johne R. Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing. PLoS One 2012, 7:e34631.
    • (2012) PLoS One , vol.7
    • Sachsenroder, J.1    Twardziok, S.2    Hammerl, J.A.3    Janczyk, P.4    Wrede, P.5    Hertwig, S.6    Johne, R.7
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 84866259851 scopus 로고    scopus 로고
    • Isolation and characterisation of a novel Bohle-like virus from two frog species in the Darwin rural area, Australia
    • Weir R.P., Moody N.J., Hyatt A.D., Crameri S., Voysey R., Pallister J., Jerrett I.V. Isolation and characterisation of a novel Bohle-like virus from two frog species in the Darwin rural area, Australia. Dis. Aquat. Org. 2012, 99:169-177.
    • (2012) Dis. Aquat. Org. , vol.99 , pp. 169-177
    • Weir, R.P.1    Moody, N.J.2    Hyatt, A.D.3    Crameri, S.4    Voysey, R.5    Pallister, J.6    Jerrett, I.V.7
  • 52
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino D.R., Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18:821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 53
    • 84891730805 scopus 로고    scopus 로고
    • A novel bat herpesvirus encodes homologues of MHC classes I and II, C-type lectin, and a unique family of immune-related genes
    • Zhang H., Todd S., Tachedjian M., Barr J.A., Luo M., Yu M., Marsh G.A., Crameri G., Wang L.F. A novel bat herpesvirus encodes homologues of MHC classes I and II, C-type lectin, and a unique family of immune-related genes. J. Virol 2012.
    • (2012) J. Virol
    • Zhang, H.1    Todd, S.2    Tachedjian, M.3    Barr, J.A.4    Luo, M.5    Yu, M.6    Marsh, G.A.7    Crameri, G.8    Wang, L.F.9


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