메뉴 건너뛰기




Volumn 11, Issue 3, 2016, Pages

Influence of the biliary system on biliary bacteria revealed by bacterial communities of the human biliary and upper digestive tracts

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84961188199     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0150519     Document Type: Article
Times cited : (77)

References (35)
  • 1
    • 0035489090 scopus 로고    scopus 로고
    • The role of bacteria in gallstone pathogenesis
    • Swidsinski A, Lee SP. The role of bacteria in gallstone pathogenesis. Front Biosci. 2001; 6(1):93-103.
    • (2001) Front Biosci. , vol.6 , Issue.1 , pp. 93-103
    • Swidsinski, A.1    Lee, S.P.2
  • 2
    • 33750291380 scopus 로고    scopus 로고
    • Biliary bacterial factors determine the path of gallstone formation
    • PMID: 17071191
    • Stewart L, Grifiss JM, Jarvis GA, Way LW. Biliary bacterial factors determine the path of gallstone formation. The American Journal of Surgery. 2006; 192(5):598-603. PMID: 17071191
    • (2006) The American Journal of Surgery. , vol.192 , Issue.5 , pp. 598-603
    • Stewart, L.1    Grifiss, J.M.2    Jarvis, G.A.3    Way, L.W.4
  • 3
    • 20444493331 scopus 로고    scopus 로고
    • The interaction between bacteria and bile
    • PMID: ISI 000231625700001
    • Begley M, Gahan CGM, Hill C. The interaction between bacteria and bile. Fems Microbiol Rev. 2005; 29(4):625-51. doi: 10.1016/j.femsre.2004.09.003 PMID: ISI:000231625700001.
    • (2005) Fems Microbiol Rev. , vol.29 , Issue.4 , pp. 625-651
    • Begley, M.1    Gahan, C.G.M.2    Hill, C.3
  • 4
    • 0013933084 scopus 로고
    • Pathogenesis of calcium bilirubinate gallstone: Role of E. Coli, beta-glucuronidase and coagulation by inorganic ions, polyelectrolytes and agitation
    • PMID: 5329901
    • Maki T. Pathogenesis of calcium bilirubinate gallstone: Role of E. coli, beta-glucuronidase and coagulation by inorganic ions, polyelectrolytes and agitation. Annals of surgery. 1966; 164(1):90-100. PMID: 5329901
    • (1966) Annals of Surgery. , vol.164 , Issue.1 , pp. 90-100
    • Maki, T.1
  • 6
    • 84937902120 scopus 로고    scopus 로고
    • The impact of bile duct cultures on surgical site infections in pancreatic surgery
    • PMID 26110464
    • Herzog T, Belyaev O, Akkuzu R, Hölling J, Uhl W, Chromik AM. The Impact of Bile Duct Cultures on Surgical Site Infections in Pancreatic Surgery. Surgical infections. 2015; 16(4):443-9. doi: 10.1089/sur. 2014.104 PMID: 26110464
    • (2015) Surgical Infections. , vol.16 , Issue.4 , pp. 443-449
    • Herzog, T.1    Belyaev, O.2    Akkuzu, R.3    Hölling, J.4    Uhl, W.5    Chromik, A.M.6
  • 8
    • 84892455430 scopus 로고    scopus 로고
    • Risk factors for increased antimicrobial resistance: A retrospective analysis of 309 acute cholangitis episodes
    • PMID: 24084640
    • Schneider J, De Waha P, Hapfelmeier A, Feihl S, Römmler F, Schlag C, et al. Risk factors for increased antimicrobial resistance: A retrospective analysis of 309 acute cholangitis episodes. Journal of Antimicrobial Chemotherapy. 2014; 69(2):519-25. doi: 10.1093/jac/dkt373 PMID: 24084640
    • (2014) Journal of Antimicrobial Chemotherapy. , vol.69 , Issue.2 , pp. 519-525
    • Schneider, J.1    De Waha, P.2    Hapfelmeier, A.3    Feihl, S.4    Römmler, F.5    Schlag, C.6
  • 9
    • 0031754332 scopus 로고    scopus 로고
    • Genetic analysis of Escherichia coli biofilm formation: Roles of flagella, motility, chemotaxis and type i pili
    • Epub 1998/10/29. PMID: 9791174
    • Pratt LA, Kolter R. Genetic analysis of Escherichia coli biofilm formation: Roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol. 1998; 30(2):285-93. Epub 1998/10/29. PMID: 9791174.
    • (1998) Mol Microbiol. , vol.30 , Issue.2 , pp. 285-293
    • Pratt, L.A.1    Kolter, R.2
  • 10
    • 0031938033 scopus 로고    scopus 로고
    • Time dependent changes in the concentration and type of bacterial sequences found in cholesterol gallstones
    • PMID: 9500691
    • Swidsinski A, Khilkin M, Pahlig H, Swidsinski S, Priem F. Time dependent changes in the concentration and type of bacterial sequences found in cholesterol gallstones. Hepatology. 1998; 27(3):662-5. PMID: 9500691
    • (1998) Hepatology. , vol.27 , Issue.3 , pp. 662-665
    • Swidsinski, A.1    Khilkin, M.2    Pahlig, H.3    Swidsinski, S.4    Priem, F.5
  • 11
    • 84884777272 scopus 로고    scopus 로고
    • Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study
    • Wu T, Zhang Z, Liu B, Hou D, Liang Y, Zhang J, et al. Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study. BMC Genomics. 2013; 14 (1):669.
    • (2013) BMC Genomics. , vol.14 , Issue.1 , pp. 669
    • Wu, T.1    Zhang, Z.2    Liu, B.3    Hou, D.4    Liang, Y.5    Zhang, J.6
  • 12
    • 84948988340 scopus 로고    scopus 로고
    • Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria
    • PMID: 26625708
    • Shen H, Ye F, Xie L, Yang J, Li Z, Xu P, et al. Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria. Sci Rep. 2015; 5:17450. doi: 10.1038/srep17450 PMID: 26625708
    • (2015) Sci Rep. , vol.5 , pp. 17450
    • Shen, H.1    Ye, F.2    Xie, L.3    Yang, J.4    Li, Z.5    Xu, P.6
  • 13
    • 14144250067 scopus 로고    scopus 로고
    • Effect of preoperative endoscopic decompression on malignant biliary obstruction and postoperative infection
    • PMID: 15782991
    • dos Santos JS, Júnior WS, Modena J, Brunaldi JE, Ceneviva R. Effect of preoperative endoscopic decompression on malignant biliary obstruction and postoperative infection. Hepatogastroenterology. 2005; 52(61):45-7. PMID: 15782991
    • (2005) Hepatogastroenterology. , vol.52 , Issue.61 , pp. 45-47
    • Dos Santos, J.S.1    Júnior, W.S.2    Modena, J.3    Brunaldi, J.E.4    Ceneviva, R.5
  • 14
    • 84902170896 scopus 로고    scopus 로고
    • Evaluation of the effectiveness of endoscopic retrograde cholangiopancreatography in patients with perihilar cholangiocarcinoma and its effect on development of cholangitis
    • PMID: 24982670
    • Spek S, Alper E, Cekic C, Cerrah S, Arabul M, Aslan F, et al. Evaluation of the effectiveness of endoscopic retrograde cholangiopancreatography in patients with perihilar cholangiocarcinoma and its effect on development of cholangitis. Gastroenterology research and practice. 2014; 2014:508286. doi: 10.1155/2014/508286 PMID: 24982670
    • (2014) Gastroenterology Research and Practice. , vol.2014 , pp. 508286
    • Spek, S.1    Alper, E.2    Cekic, C.3    Cerrah, S.4    Arabul, M.5    Aslan, F.6
  • 15
    • 0025827181 scopus 로고
    • Bacterial invasion of the biliary system by way of the portal?venous system
    • PMID: 1860688
    • Sung JY, Shaffer EA, Olson ME, Leung JW, Lam K, Costerton JW. Bacterial invasion of the biliary system by way of the portal?venous system. Hepatology. 1991; 14(2):313-7. PMID: 1860688
    • (1991) Hepatology. , vol.14 , Issue.2 , pp. 313-317
    • Sung, J.Y.1    Shaffer, E.A.2    Olson, M.E.3    Leung, J.W.4    Lam, K.5    Costerton, J.W.6
  • 16
    • 0026557808 scopus 로고
    • Defense system in the biliary tract against bacterial infection
    • PMID: 1563308
    • Sung J, Costerton J, Shaffer E. Defense system in the biliary tract against bacterial infection. Digestive diseases and sciences. 1992; 37(5):689-96. PMID: 1563308
    • (1992) Digestive Diseases and Sciences. , vol.37 , Issue.5 , pp. 689-696
    • Sung, J.1    Costerton, J.2    Shaffer, E.3
  • 18
    • 84937410038 scopus 로고    scopus 로고
    • Diversity of duodenal and rectal microbiota in biopsy tissues and luminal contents in healthy volunteers
    • PMID: 25737115
    • Li G, Yang M, Zhou K, Zhang L, Tian L, Lv S, et al. Diversity of duodenal and rectal microbiota in biopsy tissues and luminal contents in healthy volunteers. Journal of microbiology and biotechnology. 2015; 25(7):1136-45. doi: 10.4014/jmb.1412.12047 PMID: 25737115
    • (2015) Journal of Microbiology and Biotechnology. , vol.25 , Issue.7 , pp. 1136-1145
    • Li, G.1    Yang, M.2    Zhou, K.3    Zhang, L.4    Tian, L.5    Lv, S.6
  • 21
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: Fast length adjustment of short reads to improve genome assemblies
    • PMID: 21903629
    • Mago T, Salzberg SL. FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011; 27(21):2957-63. doi: 10.1093/bioinformatics/btr507 PMID: 21903629
    • (2011) Bioinformatics. , vol.27 , Issue.21 , pp. 2957-2963
    • Mago, T.1    Salzberg, S.L.2
  • 23
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • PMID: 20709691
    • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010; 26 (19):2460-1. doi: 10.1093/bioinformatics/btq461 PMID: 20709691
    • (2010) Bioinformatics. , vol.26 , Issue.19 , pp. 2460-2461
    • Edgar, R.C.1
  • 24
    • 58149200948 scopus 로고    scopus 로고
    • The ribosomal database project: Improved alignments and new tools for rrna analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, et al. The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 2009; 37(suppl 1):D141-D5.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 141-145
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 25
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • PMID: 23975157
    • Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature biotechnology. 2013; 31(9):814-21. doi: 10.1038/nbt.2676 PMID: 23975157
    • (2013) Nature Biotechnology. , vol.31 , Issue.9 , pp. 814-821
    • Langille, M.G.1    Zaneveld, J.2    Caporaso, J.G.3    McDonald, D.4    Knights, D.5    Reyes, J.A.6
  • 26
    • 84866549438 scopus 로고    scopus 로고
    • Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
    • PMID 23013615
    • Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012; 13(9):R79. doi: 10. 1186/gb-2012-13-9-r79 PMID: 23013615
    • (2012) Genome Biol. , vol.13 , Issue.9 , pp. 79
    • Morgan, X.C.1    Tickle, T.L.2    Sokol, H.3    Gevers, D.4    Devaney, K.L.5    Ward, D.V.6
  • 27
    • 84862162269 scopus 로고    scopus 로고
    • Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
    • PMID: 22698087
    • Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, et al. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol. 2012; 13(6):R42. doi: 10.1186/gb-2012-13-6-r42 PMID: 22698087
    • (2012) Genome Biol. , vol.13 , Issue.6 , pp. 42
    • Segata, N.1    Haake, S.K.2    Mannon, P.3    Lemon, K.P.4    Waldron, L.5    Gevers, D.6
  • 28
    • 0024470068 scopus 로고
    • Aerobic and anaerobic microbiology of biliary tract disease
    • Epub 1989/10/01. PMID: 2584384; PubMed Central PMCID: PMC267027
    • Brook I. Aerobic and anaerobic microbiology of biliary tract disease. J Clin Microbiol. 1989; 27 (10):2373-5. Epub 1989/10/01. PMID: 2584384; PubMed Central PMCID: PMC267027.
    • (1989) J Clin Microbiol. , vol.27 , Issue.10 , pp. 2373-2375
    • Brook, I.1
  • 29
    • 0035463194 scopus 로고    scopus 로고
    • Bacteriologic analyses of bile and brown pigment stones in patients with acute cholangitis
    • PMID: 11522975
    • Leung JW, Liu Y-l, Lau GC, Chan RC, Lai AC, Ling TK, et al. Bacteriologic analyses of bile and brown pigment stones in patients with acute cholangitis. Gastrointestinal endoscopy. 2001; 54(3):340-5. PMID: 11522975
    • (2001) Gastrointestinal Endoscopy. , vol.54 , Issue.3 , pp. 340-345
    • Leung, J.W.1    Liu, Y.-L.2    Lau, G.C.3    Chan, R.C.4    Lai, A.C.5    Ling, T.K.6
  • 30
    • 0020679147 scopus 로고
    • Clostridium perfringens and other anaerobes isolated from bile
    • PMID: 6298284
    • Sakaguchi Y, Murata K, Kimura M. Clostridium perfringens and other anaerobes isolated from bile. J Clin Pathol. 1983; 36(3):345-9. PMID: 6298284
    • (1983) J Clin Pathol. , vol.36 , Issue.3 , pp. 345-349
    • Sakaguchi, Y.1    Murata, K.2    Kimura, M.3
  • 31
    • 0041409823 scopus 로고    scopus 로고
    • Bile anaerobic bacteria detection and antibiotic susceptibility in patients with gallstone
    • PMID: 14599954
    • Lu Y, Xiang T-H, Shi J-S, Zhang B-Y. Bile anaerobic bacteria detection and antibiotic susceptibility in patients with gallstone. Hepatobiliary Pancreat Dis Int. 2003; 2(3):431-4. PMID: 14599954
    • (2003) Hepatobiliary Pancreat Dis Int. , vol.2 , Issue.3 , pp. 431-434
    • Lu, Y.1    Xiang, T.-H.2    Shi, J.-S.3    Zhang, B.-Y.4
  • 33
    • 71049134871 scopus 로고    scopus 로고
    • Identification of bacteria enduring endodontic treatment procedures by a combined reverse transcriptase-polymerase chain reaction and reverse-capture checkerboard approach
    • PMID: 20003934
    • Rôças IN, Siqueira JF. Identification of bacteria enduring endodontic treatment procedures by a combined Reverse Transcriptase-Polymerase Chain reaction and Reverse-Capture Checkerboard approach. Journal of endodontics. 2010; 36(1):45-52. doi: 10.1016/j.joen.2009.10.022 PMID: 20003934
    • (2010) Journal of Endodontics. , vol.36 , Issue.1 , pp. 45-52
    • Rôças, I.N.1    Siqueira, J.F.2
  • 34
    • 77949918515 scopus 로고    scopus 로고
    • Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin
    • PMID: 20079831
    • Marchandin H, Damay A, Roudière L, Teyssier C, Zorgniotti I, Dechaud H, et al. Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin. Research in microbiology. 2010; 161(2):91-100. doi: 10.1016/j.resmic.2009.12.008 PMID: 20079831
    • (2010) Research in Microbiology. , vol.161 , Issue.2 , pp. 91-100
    • Marchandin, H.1    Damay, A.2    Roudière, L.3    Teyssier, C.4    Zorgniotti, I.5    Dechaud, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.