Intestinal microbiota and allergic diseases: A systematic review

Allergologia et Immunopathologia

Volumn 44, Issue 2, 2016, Pages 177-188

  Melli, L C F L ^a,b   do Carmo Rodrigues, M S ^b   Araujo Filho H B ^a,b   Sole D ^a   de Morais, M B ^a  

^a FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIFIEO   (Brazil)

Author keywords

Allergy; Asthma; Bacteria; Eczema; Intestine; Microbiota; Rhinitis

Indexed keywords

AKKERMANSIA MUCINIPHILA; ALLERGIC DISEASE; ALLERGIC RHINITIS; ASTHMA; ATOPIC DERMATITIS; ATOPY; BACTERIUM; BACTEROIDACEAE; BACTEROIDES; BACTEROIDES FRAGILIS; BIFIDOBACTERIUM ADOLESCENTIS; BIFIDOBACTERIUM BIFIDUM; BIFIDOBACTERIUM CATENULATUM; BIFIDOBACTERIUM LONGUM; CHILD HEALTH; CLOSTRIDIUM; ECZEMA; ESCHERICHIA COLI; FAECALIBACTERIUM PRAUSNITZII; FECES ANALYSIS; FECES MICROFLORA; FIRMICUTES; FOOD ALLERGY; HUMAN; INTESTINE FLORA; LACTOBACILLUS; MICROBIAL DIVERSITY; NONHUMAN; PEPTOCLOSTRIDIUM DIFFICILE; REVIEW; RHINITIS; STAPHYLOCOCCUS AUREUS; SYSTEMATIC REVIEW; WHEEZING; ANIMAL; BIODIVERSITY; CHILD; DIET THERAPY; HYPERSENSITIVITY; IMMUNOLOGY; INTESTINE; MICROBIOLOGY;

PROBIOTIC AGENT;

ANIMALS; BACTEROIDACEAE; BIODIVERSITY; CHILD; FIRMICUTES; GASTROINTESTINAL MICROBIOME; HUMANS; HYPERSENSITIVITY; INTESTINES; PROBIOTICS;

EID: 84960448584     PISSN: 03010546     EISSN: 15781267     Source Type: Journal    
DOI: 10.1016/j.aller.2015.01.013     Document Type: Review

References (57)

1. Berg R.D. The indigenous gastrointestinal microflora. Trends Microbiol 1996, 4:430-435.
2. Gronlund M.M., Lehtonen O.P., Eerola E., Kero P. Fecal microflora in healthy infants born by different methods of delivery: permanent changes in intestinal flora after cesarean delivery. J Pediatr Gastroenterol Nutr 1999, 28:19-25.
3. Kalliomäki M., Kirjavainen P., Eerola E., Kero P., Salminen S., Isolauri E. Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing. J Allergy Clin Immunol 2001, 107:129-134.
4. Rautava S., Ruuskanen O., Ouwehand A., Salminen S., Isolauri E. The hygiene hypotheses of atopic disease - an extended version. J Pediatr Gastroenterol Nutr 2004, 38:378-388.
5. Penders J., Stobberingh E.E., van den Brandt P.A., Thijs C. The role of the intestinal microbiota in the development of atopic disorders. Allergy 2007, 62:1223-1236.
6. Gil A.C. Como elaborar projetos de pesquisa 2002, Atlas, São Paulo. 4th ed.
7. Lodinová-Žádníková R., Prokešová L., Kocourková I., Hrdý J., Žižka J. Prevention of allergy in infants of allergic mothers by probiotic Escherichia coli. Int Arch Allergy Immunol 2010, 153:201-206.
8. Nermes M., Kantele J.M., Atosuo T.J., Salminen S., Isolauri E. Interaction of orally administered Lactobacillus rhamnosus GG with skin and gut microbiota and humoral immunity in infants with atopic dermatitis. Clin Exp Allergy 2010, 41:370-377.
9. van Zwol A., van den Berg A., Knol J., Twisk J.W.R., Fetter W.P.F., van Elburg R.M. Intestinal microbiota in allergic and nonallergic 1-year-old very low birth weight infants after neonatal glutamine supplementation. Acta Paediatr 2010, 99:1868-1874.
10. Abrahamsson T.R., Jakobsson H.E., Andersson A.F., Björkst B., Engstrand L., Jenmalm M.C. Low diversity of the gut microbiota in infants with atopic eczema. J Allergy Clin Immunol 2012, 129:434-440.
11. Ismail I.H., Oppedisano F., Joseph S.J., Boyle R.J., Licciardi P.V., Robins-Browne R.M., et al. Reduced gut microbial diversity in early life is associated with later development of eczema but not atopy in high-risk infants. Pediatr Allergy Immunol 2012, 23:674-681.
12. Nylund L., Satokari R., Nikkilä J., Rajilić-Stojanović M., Kalliomäki M., Isolauri E., et al. Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease. BMC Microbiol 2013, 13:12.
13. Gronlund M.M., Gueimonde M., Laitines K., Kociubinkki T., Grönroos Salmine S., Isolauri E. Maternal breast-milk and intestinal bifidobacteria guide the compositional development of the Bifidobacterium microbiota in infants at risk of allergic disease. Clin Exp Allergy 2007, 37:1764-1772.
14. Penders J., Thijs C., van den Brandt P.A., Kummeling I., Snijders B., Stelma F., et al. Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study. Gut 2007, 56:661-667.
15. Adlerberth I., Strachan D.P., Matricardi P.M., Ahrné S., Orfei L., Aberg N., et al. Gut microbiota and development of atopic eczema in 3 European birth cohorts. J Allergy Clin Immunol 2007, 120:343-350.
16. Penders J., Thijs C., Mommers M., Stobberingh E.E., Dompeling E., Reijmerink N.E., et al. Intestinal lactobacilli and the DC-SIGN gene for their recognition by dendritic cells play a role in the aetiology of allergic manifestations. Microbiology 2010, 156:3298-3305.
17. Bisgaard H., Li N., Bonnelykke K., Chawes B.L.K., Skov T., Paludan-Müller G., et al. Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. J Allergy Clin Immunol 2011, 128:646-652.
18. van Nimwegen F.A., Penders J., Stobberingh E.E., Postma D.S., Koppelman G.H., Kerkhof M. Mode and place of delivery, gastrointestinal microbiota, and their influence on asthma and atopy. J Allergy Clin Immunol 2011, 128:948-955.
19. Verhulst S.L., Vael C., Beunckens C., Nelen V., Goossens H., Desager K. Longitudinal analysis on the association between antibiotic use, intestinal microflora, and wheezing during the first year of life. J Asthma 2008, 45:828-832.
20. Vael C., Nelen V., Verhulst S.L., Goossens H., Desager K.N. Early intestinal Bacteroides fragilis colonisation and development of asthma. BMC Pulm Med 2008, 8:19.
21. Vael C., Vanheirstraeten L., Desager K.N., Goossens H. Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma. Microbiology 2011, 11:68.
22. Storro Ø., Øien T., Langsrud Ø., Rudi K., Dotterud C., Johnsen R. Temporal variations in early gut microbial colonization are associated with allergen-specific immunoglobulin E but not atopic eczema at 2 years of age. Clin Exp Allergy 2011, 41:1545-1554.
23. Suzuki S., Shimojo N., Tajiriw Y., Kumemuraw M., Kohno Y. Differences in the composition of intestinal Bifidobacterium species and the development of allergic diseases in infants in rural Japan. Clin Exp Allergy 2007, 37:506-511.
24. Songjinda P., Nakayama J., Tateyama A., Tanaka S., Tsubouchi M., Kiyohara C., et al. Differences in developing intestinal microbiota between allergic and non-allergic infants: a pilot study in Japan. Biosci Biotechnol Biochem 2007, 71:2338-2342.
25. Sjögren Y.M., Jenmalmw M.C., Böttcherw M.F., Björksténz B., Sverremark-Ekström E. Altered early infant gut microbiota in children developing allergy up to 5 years of age. Clin Exp Allergy 2009, 39:518-526.
26. Forno E., Onderdonk A.B., McCracken J., Litonjua A.A., Laskey D., Delaney M.L., et al. Diversity of the gut microbiota and eczema in early life. Clin Mol Allergy 2008, 6:11.
27. Gosalbes M.J., Llop S., Vallès Y., Moya A., Ballester F., Francino M.P. Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants. Clin Exp Allergy 2013, 43:198-211.
28. Wang M., Karlsson C., Olsson C., Adlerberth I., Wold A.E., Strachan D.P., et al. Reduced diversity in the early fecal microbiota of infants with atopic eczema. J Allergy Clin Immunol 2008, 121:129-134.
29. Johansson M.A., Sjögren I.M., Persson J.O., Nilsson C., Sverremark-Ekstro E. Early colonization with a group of lactobacilli decreases the risk for allergy at five years of age despite allergic heredity. PLoS ONE 2011, 6:e23031.
30. Stsepetova J., Sepp E., Julge K., Vaughan E., Mikelsaar M., de Vos W.M. Molecularly assessed shifts of Bifidobacterium ssp. and less diverse microbial communities are characteristic of 5-year-oldallergic children. FEMS Immunol Med Microbiol 2007, 51:260-269.
31. Gore C., Munro K., Lay C., Bibiloni R., Morris J., Woodcock A., et al. Bifidobacterium pseudocatenulatum is associated with atopic eczema: a nested case-control study investigating the fecal microbiota of infants. J Allergy Clin Immunol 2008, 121:135-140.
32. Suzuki S., Shimojo N., Tajiri Y., Kumemura M., Kohno Y. A quantitative and relative increase in intestinal bacteroides in allergic infants in rural Japan. Asian Pac J Allergy Immunol 2008, 26:113-119.
33. Waligora-Dupriet A.J., Campeotto F., Romero K., Mangin I., Rouzaud G., Ménard O., et al. Diversity of gut Bifidobacterium species is not altered between allergic and non-allergic French infants. Anaerobe 2011, 17:91-96.
34. Candela M., Rampelli S., Turroni S., Severgnini M., Consolandi C., De Bellis G., et al. Unbalance of intestinal microbiota in atopic children. BMC Microbiol 2012, 12:95.
35. Castro-Rodriguez J.A., Holberg C.J., Wright A.L., Martinez F.D. A clinical index to define risk of asthma in young children with recurrent wheezing. Am J Respir Crit Care Med 2000, 162:1403-1406.
36. Asher M.I., Keil U., Anderson H.R., Beasley R., Crane J., Martinez F., et al. International study of asthma and allergies in childhood (ISAAC): rationale and methods. Eur Respir J 1995, 8:483-491.
37. Sepp E., Julge K., Vasar M., Naaber P., Bjorksten B., Mikelsaar M. Intestinal microflora of Estonian and Swedish infants. Acta Paediatr 1997, 86:956-961.
38. Bjorksten B., Naaber P., Sepp E., Mikelsaar M. The intestinal microflora in allergic Estonian and Swedish 2-year-old children. Clin Exp Allergy 1999, 29:342-346.
39. Bjorksten B., Sepp E., Julge K., Voor T., Mikelsaar M. Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol 2001, 108:516-520.
40. Huijsdens X.W., Linskens R.K., Mak M., Meuwissen S.G., Vandenbroucke-Grauls C.M., Savelkoul P.H. Quantification of bacteria adherent to gastrointestinal mucosa by real-time PCR. J Clin Microbiol 2002, 40:4423-4427.
41. Zoetendal E.G., Collier C.T., Koike S., Mackie R.I., Gaskins H.R. Molecular ecological analysis of the gastrointestinal microbiota: a review. J Nutr 2004, 134:465-472.
42. Furrie E. A molecular revolution in the study of intestinal microflora. Gut 2006, 55:141-143.
43. Vandenbroucke J.P., VonElm E., Altman D.J., Gøtzsche P.C., Mulrowf C.D., Pocock S.J., et al. En nombre de la Iniciativa STROBE. Mejorar La comunicación de estúdios observacionales em epidemiología (STROBE): explicación y elaboración. Gac Sanit 2009, 23:158.e1-158.e28.
44. Pereira M.G. Epidemiologia Teoria e prática 2001, Ed. Guanabara Koogan. 5th ed.
45. Avershina E., Storrø O., Øien T., Johnsen R., Pope P., Rudi K. Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol 2014, 87:280-290.
46. Tannock G.W. Molecular methods for exploring the intestinal ecosystem. Br J Nutr 2002, 87(Suppl. 2):S199-S201.
47. Morais M.B., Jacob C.M. The role of probiotics and prebiotics in pediatric practice. J Pediatr 2006, 82:S189-S197.
48. Ouwehand A.C., Isolauri E., He F., Hashimoto H., Benno Y., Salminen S. Differences in Bifidobacterium flora composition in allergic and healthy infants. J Allergy Clin Immunol 2001, 108:144-145.
49. Fouhy F., Ross R.P., Cotter P.D. Composition of the early intestinal microbiota. Gut Microbes 2012, 3:203-220.
50. Zhang G., Svenungsson B., Kamell A., Weintraub A. Prevalence of enterotoxigenic Bacteroides fragilis in adult patients with diarrhea and healthy controls. Clin Infect Dis 1999, 29:590-594.
51. Freeman J., Wilcox M.H. Antibiotics and Clostridium difficile. Microbes Infect 1999, 1:377-384.
52. Iap G.C., Chee K.K., Hong P., Lay C., Satria C.D., Sumadiono, et al. Evaluation of stool microbiota signatures in two cohorts of Asian (Singapore and Indonesia) newborns at risk of atopy. BMC Microbiol 2011, 1:193.
53. Sokol H., Pigneur B., Watterlot L., Lakhdari O., Bermudez-Humará L.G., Gratadoux J.J., et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 2008, 105:16731-16736.
54. Xinyun Q., Mingming Z., Xiaotong Y., Na H., Chenggong Y. Faecalibacterium prausnitzii upregulates regulatory T cells and anti-inflammatory cytokines in treating TNBS-induced colitis. J Crohns Colitis 2013, 7:e558-e568.
55. Tilg H., Moschen A.R. Microbiota and diabetes: an evolving relationship. Gut 2014, 63:1513-1521.
56. Storrø O., Avershinab E., Rudi K. Diversity of intestinal microbiota in infancy and the risk of allergic disease in childhood. Curr Opin Allergy Clin Immunol 2013, 13:257-262.
57. Domingues-Bello M.G., Costello E.K., Contreras M., Magris M., Hidalgo G., Fierer N., et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. PNAS 2010, 107:11971-11975.