Detection of a Novel Bovine Astrovirus in a Cow with Encephalitis

Transboundary and Emerging Diseases

Volumn 63, Issue 3, 2016, Pages 253-259

  Schlottau, K ^a   Schulze, C ^b   Bilk, S ^b   Hanke, D ^a   Hoper D ^a   Beer, M ^a   Hoffmann, B ^a  

^a FEDERAL RESEARCH INSTITUTE FOR ANIMAL HEALTH   (Germany)

^b State Laboratory Brandenburg   (Germany)

Author keywords

Bovine astrovirus; Encephalitis; RT qPCR

Indexed keywords

ANIMAL; ASTROVIRUS INFECTION; BOVINE; CASE REPORT; CATTLE DISEASE; CLASSIFICATION; DNA SEQUENCE; ENCEPHALITIS; FATALITY; FEMALE; GENETICS; GERMANY; ISOLATION AND PURIFICATION; MAMASTROVIRUS; PHYLOGENY; VETERINARY; VIROLOGY; VIRUS GENOME;

ANIMALS; ASTROVIRIDAE INFECTIONS; CATTLE; CATTLE DISEASES; ENCEPHALITIS; FATAL OUTCOME; FEMALE; GENOME, VIRAL; GERMANY; MAMASTROVIRUS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 84960398559     PISSN: 18651674     EISSN: 18651682     Source Type: Journal    
DOI: 10.1111/tbed.12493     Document Type: Article

References (25)

1. Alfred, N., H. Liu, M. L. Li, S. F. Hong, H. B. Tang, Z. Z. Wei, Y. Chen, F. K. Li, and Y. Z. Huang, 2015: Molecular epidemiology and phylogenetic analysis of diverse bovine astroviruses associated with diarrhea in cattle and water buffalo calves in China. J. Vet. Med. Sci. 77, 643-651.
2. Appleton, H., and P. G. Higgins, 1975: Letter: Viruses and gastroenteritis in infants. Lancet 1, 1297.
3. Blomstrom, A. L., F. Widen, A. S. Hammer, S. Belak, and M. Berg, 2010: Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics. J. Clin. Microbiol. 48, 4392-4396.
4. Bosch, A., and R. M. Guix, 2014: Human astroviruses. Clin. Microbiol. Rev. 27, 1048-1074.
5. Bouzalas, I. G., W. J. Walland, C. Drögemüller, A. Zurbriggen, M. Vandevelde, A. Oevermann, and R. Seuberlich, 2014: Neurotropic astrovirus in cattle with nonsuppurative encephalitis in Europe. J. Clin. Microbiol. 52, 3318-3324.
6. Candido, M., A. L. Alencar, S. R. Almeida-Queiroz, G. Buzinaro Mda, F. S. Munin, S. H. de Godoy, M. C. Livonesi, A. M. Fernandes, and R. L. de Sousa, 2015: Molecular detection and phylogenetic analysis of bovine astrovirus in Brazil. Arch. Virol. 160, 1519-1525.
7. De Benedictis, P., S. Schultz-Cherry, A. Burnham, and G. Cattoli, 2011: Astrovirus infections in humans and animals - molecular biology, genetic diversity, and interspecies transmissions. Infect. Genet. Evol. 11, 1529-1544.
8. Glaser, C. A., S. Honarmand, L. J. Anderson, D. P. Schnurr, B. Forghani, C. K. Cossen, F. L. Schuster, L. J. Christie, and J. H. Tureen, 2006: Beyond viruses: clinical profiles and etiologies associated with encephalitis. Clin. Infect. Dis. 43, 1565-1577.
9. Guindon, S., and O. Gascuel, 2003: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704.
10. Hoffmann, B., K. Depner, H. Schirrmeier, and M. Beer, 2006: A universal heterologous internal control system for duplex real-time RT-PCR assays used in a detection system for pestiviruses. J. Virol. Methods 136, 200-209.
11. Jonassen, C. M., T. O. Jonasse, and B. Grinde, 1998: A common RNA motif in the 3' end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J. Gen. Virol. 79, 715-718.
12. Katoh, K., K. Misawa, K.-I. Kuma, and T. Miyata, 2002: MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 3059-3066.
13. Kearse, M., R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, C. Duran, T. Thierer, B. Ashton, P. Meintjes, and A. Drummond, 2012: Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649.
14. Lewis, T. L., and S. M. Matsui, 1997: Studies of the astrovirus signal that induces (-1) ribosomal frameshifting. Adv. Exp. Med. Biol. 412, 323-330.
15. Li, L., S. Diab, S. McGraw, B. Barr, R. Traslavina, R. Higgins, T. Talbot, P. Blanchard, G. Rimoldi, E. Fahsbender, B. Page, T. G. Phan, C. Wang, X. Deng, P. Pesavento, and E. Delwart, 2013: Divergent astrovirus associated with neurologic disease in cattle. Emerg. Infect. Dis. 19, 1385-1392.
16. Moser, L. A., and S. Schultz-Cherry, 2005: Pathogenesis of astrovirus infection. Viral Immunol. 18, 4-10.
17. Naccache, S. N., A. L. Greninger, D. Lee, L. L. Coffey, T. Phan, A. Rein-Weston, A. Aronsohn, J. Hackett Jr, E. L. Delwart, and C. Y. Chiu, 2013: The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J. Virol. 87, 11966-11977.
18. Naccache, S. N., K. S. Peggs, F. M. Mattes, R. Phadke, J. A. Garson, P. Grant, E. Samayoa, S. Federman, S. Miller, M. P. Lunn, V. Gant, and C. Y. Chiu, 2015: Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clin. Infect. Dis. 60, 919-923.
19. Oem, J. K., and D. J. An, 2014: Phylogenetic analysis of bovine astrovirus in Korean cattle. Virus Genes 48, 372-375.
20. Quan, P. L., T. A. Wagner, T. Briese, T. R. Torgerson, M. Hornig, A. Tashmukhamedova, C. Firth, G. Palacios, A. Baisre-De-Leon, C. D. Paddock, S. K. Hutchison, M. Egholm, S. R. Zaki, J. E. Goldman, H. D. Ochs, and W. I. Lipkin, 2010: Astrovirus encephalitis in boy with X-linked agammaglobulinemia. Emerg. Infect. Dis. 16, 918-925.
21. Rosseel, T., P. B, D. C. K, O. O, and S. Van Borm, 2014: False-positive results in metagenomic virus discovery: a strong case for follow-up diagnosis. Transbound Emerg. Dis. 61, 293-299.
22. Scheuch, M., D. Hoper, and M. Beer, 2015: RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets. BMC Bioinformatics 16, 69.
23. Tse, H., W. M. Chan, H. W. Tsoi, R. Y. Fan, C. C. Lau, S. K. Lau, P. C. Woo, and K. Y. Yuen, 2011: Rediscovery and genomic characterization of bovine astroviruses. J. Gen. Virol. 92, 1888-1898.
24. Walter, J. E., and D. K. Mitchell, 2003: Astrovirus infection in children. Curr. Opin. Infect Dis. 16, 247-253.
25. Wunderli, W., A. Meerbach, T. Gungor, C. Berger, O. Greiner, R. Caduff, A. Trkola, W. Bossart, D. Gerlach, M. Schibler, S. Cordey, T. A. McKee, S. Van Belle, L. Kaiser, and C. Tapparel, 2011: Astrovirus infection in hospitalized infants with severe combined immunodeficiency after allogeneic hematopoietic stem cell transplantation. PLoS ONE 6, e27483.